BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 15979

Title: Lipopolysaccharide Bound Structures of the Active Fragments of Fowlicidin-1, a Cathelicidin Family of Antimicrobial and Antiendotoxic Peptide from Chicken, Determined by Transferred Nuclear Overhauser Effect Spectroscopy   PubMed: 18844294

Deposition date: 2008-10-07 Original release date: 2009-02-09

Authors: Bhunia, Anirban; Bhattacharjya, Surajit

Citation: Bhunia, Anirban; Bhattacharjya, Surajit. "Lipopolysaccharide Bound Structures of the Active Fragments of Fowlicidin-1, a Cathelicidin Family of Antimicrobial and Antiendotoxic Peptide from Chicken, Determined by Transferred Nuclear Overhauser Effect Spectroscopy"  Biopolymers 92, 9-22 (2009).

Assembly members:
Fowlicidin-1, polymer, 19 residues, 2224.778 Da.

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:   Production method: recombinant technology   Host organism: solid phase peptide synthesis

Entity Sequences (FASTA):
Fowlicidin-1: LVIRTVIAGYNLYRAIKKK

Data sets:
Data typeCount
1H chemical shifts124

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1Fowlicidin-11

Entities:

Entity 1, Fowlicidin-1 19 residues - 2224.778 Da.

1   LEUVALILEARGTHRVALILEALAGLYTYR
2   ASNLEUTYRARGALAILELYSLYSLYS

Samples:

sample_1: H2O 90%; D2O 10%; entity

sample_conditions_1: pH: 4.5; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-1H NOESYsample_1isotropicsample_conditions_1
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1

Software:

DYANA v1.5, Guntert, Braun and Wuthrich - refinement

NMR spectrometers:

  • Bruker DRX 600 MHz

Related Database Links:

BMRB 15667 20125 21013
PDB
DBJ BAF75952
GB AAS99323 AAZ42399 AAZ65841 ACR22842 ADZ99028
REF NP_001001605
SP Q6QLQ5