BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 10082

Title: Solution structure of RRM domain in calcipressin 1

Deposition date: 2007-01-23 Original release date: 2008-08-14

Authors: He, F.; Muto, Y.; Inoue, M.; Kigawa, T.; Shirouzu, M.; Terada, T.; Yokoyama, S.

Citation: He, F.; Muto, Y.; Inoue, M.; Kigawa, T.; Shirouzu, M.; Terada, T.; Yokoyama, S.. "Solution structure of RRM domain in calcipressin 1"  . ., .-..

Assembly members:
RRM domain, polymer, 104 residues, Formula weight is not available

Natural source:   Common Name: mouse   Taxonomy ID: 10090   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Mus musculus

Experimental source:   Production method: cell free synthesis

Entity Sequences (FASTA):
RRM domain: GSSGSSGLIACVANDDVFSE SETRAKFESLFRTYDKDTTF QYFKSFKRVRINFSNPLSAA DARLRLHKTEFLGKEMKLYF AQTLHIGSSHLAPPNPDKSG PSSG

Data sets:
Data typeCount
13C chemical shifts448
15N chemical shifts91
1H chemical shifts670

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1calcipressin 11

Entities:

Entity 1, calcipressin 1 104 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYLEUILEALA
2   CYSVALALAASNASPASPVALPHESERGLU
3   SERGLUTHRARGALALYSPHEGLUSERLEU
4   PHEARGTHRTYRASPLYSASPTHRTHRPHE
5   GLNTYRPHELYSSERPHELYSARGVALARG
6   ILEASNPHESERASNPROLEUSERALAALA
7   ASPALAARGLEUARGLEUHISLYSTHRGLU
8   PHELEUGLYLYSGLUMETLYSLEUTYRPHE
9   ALAGLNTHRLEUHISILEGLYSERSERHIS
10   LEUALAPROPROASNPROASPLYSSERGLY
11   PROSERSERGLY

Samples:

sample_1: RRM domain, [U-13C; U-15N], 0.8 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D 15N-separated NOESYsample_1not availablecondition_1
3D 13C-separated NOESYsample_1not availablecondition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.863, Kobayashi, N. - data analysis

CYANA v2.0.29, Guntert, P. - refinement, structure solution

NMR spectrometers:

  • Bruker AVANCE 800 MHz

Related Database Links:

PDB
DBJ BAC36729
GB AAF63486 AAF72701 AAH13551 EDL03783
REF NP_062339 XP_012971691

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts