BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 11131

Title: Solution structure of the FYVE domain from human FYVE domain containing 27 isoform b protein

Deposition date: 2010-03-31 Original release date: 2011-04-01

Authors: Tomizawa, T.; Kigawa, T.; Koshiba, S.; Inoue, M.; Yokoyama, S.

Citation: Tomizawa, T.; Kigawa, T.; Koshiba, S.; Inoue, M.; Yokoyama, S.. "Solution structure of the FYVE domain from human FYVE domain containing 27 isoform b protein"  . ., .-..

Assembly members:
FYVE domain, polymer, 84 residues, Formula weight is not available
ZN, non-polymer, 65.409 Da.

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: cell free synthesis   Host organism: E. coli - cell free

Entity Sequences (FASTA):
FYVE domain: GSSGSSGRYPTNNFGNCTGC SATFSVLKKRRSCSNCGNSF CSRCCSFKVPKSSMGATAPE AQRETVFVCASCNQTLSKSG PSSG

Data sets:
Data typeCount
13C chemical shifts311
15N chemical shifts76
1H chemical shifts467

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1FYVE domain1
2ZINC ION no.12
3ZINC ION no.22

Entities:

Entity 1, FYVE domain 84 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYARGTYRPRO
2   THRASNASNPHEGLYASNCYSTHRGLYCYS
3   SERALATHRPHESERVALLEULYSLYSARG
4   ARGSERCYSSERASNCYSGLYASNSERPHE
5   CYSSERARGCYSCYSSERPHELYSVALPRO
6   LYSSERSERMETGLYALATHRALAPROGLU
7   ALAGLNARGGLUTHRVALPHEVALCYSALA
8   SERCYSASNGLNTHRLEUSERLYSSERGLY
9   PROSERSERGLY

Entity 2, ZINC ION no.1 - Zn - 65.409 Da.

1   ZN

Samples:

sample_1: zf-AN1 domain, [U-13C; U-15N], 1.83 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; ZnCl2 0.25 mM; IDA 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D 15N-separated NOESYsample_1isotropiccondition_1
3D 13C-separated NOESYsample_1isotropiccondition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20030801, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9295, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - structure solution

NMR spectrometers:

  • Bruker AVANCE 800 MHz

Related Database Links:

PDB
DBJ BAC05200 BAC11260 BAH12306 BAH12390 BAH13112
EMBL CAD38913 CAH92258
GB AAH30621 AAH61741 AIC61199 AKI69883 EAW49895
REF NP_001002261 NP_001002262 NP_001126322 NP_001167590 NP_001167591
SP Q5R7K2 Q5T4F4 Q6P7B7

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts