BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 16797

Title: Structure of the three-Cys2His2 domain of mouse testis zinc finger protein   PubMed: 20544958

Deposition date: 2010-03-29 Original release date: 2010-07-27

Authors: Chou, Chun-Chi; Lou, Yuan-Chao; Chen, Chinpan

Citation: Chou, Chun-Chi; Lou, Yuan-Chao; Tang, Tang; Chen, Chinpan. "Structure and DNA binding characteristics of the three-Cys2His2 domain of mouse testis zinc finger protein."  Proteins 78, 2202-2212 (2010).

Assembly members:
mTZD_finger2, polymer, 27 residues, 3120.5 Da.
ZN, non-polymer, 65.409 Da.

Natural source:   Common Name: Mouse   Taxonomy ID: 10090   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Mus musculus

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
mTZD_finger2: EKPFSCSLCPQRSRDFSAMT KHLRTHG

Data sets:
Data typeCount
13C chemical shifts106
15N chemical shifts26
1H chemical shifts175

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1mTZD finger21
2ZINC ION2

Entities:

Entity 1, mTZD finger2 27 residues - 3120.5 Da.

1   GLULYSPROPHESERCYSSERLEUCYSPRO
2   GLNARGSERARGASPPHESERALAMETTHR
3   LYSHISLEUARGTHRHISGLY

Entity 2, ZINC ION - Zn - 65.409 Da.

1   ZN

Samples:

sample_1: mTZD finger2 mM; acetic acid, [U-99% 2H], 50 mM; sodium chloride 20 mM

sample_conditions_1: ionic strength: 20 mM; pH: 6.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 1H-13C HSQCsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HBHA(CO)NHsample_1isotropicsample_conditions_1
3D HN(CO)CAsample_1isotropicsample_conditions_1
3D HCCH-TOCSYsample_1isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D 1H-13C NOESYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1

Software:

X-PLOR NIH v2.18, Schwieters, Kuszewski, Tjandra and Clore - structure solution

NMRView v5, Johnson, One Moon Scientific - chemical shift assignment

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

TALOS, Cornilescu, Delaglio and Bax - data analysis

NMR spectrometers:

  • Bruker Avance 800 MHz
  • Bruker Avance 600 MHz

Related Database Links:

PDB
DBJ BAB30015 BAG73879
GB AAD27708 AAD48448 AAF61244 AAI37688 AAK13198
REF NP_001102987 NP_001129098 NP_001178153 NP_001303831 NP_001303832
SP A1YGK1 A2T7E6 Q9JKD9 Q9Y2Y4
TPG DAA19797

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts