BMRB Entry 19104
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR19104
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Title: Induced folding in RNA recognition by Arabidopsis thaliana DCL1 PubMed: 26101256
Deposition date: 2013-03-19 Original release date: 2015-09-09
Authors: Suarez, Irina; Burdisso, Paula; Benoit, Matthieu; Boisbouvier, Jerome; Rasia, Rodolfo
Citation: Suarez, Irina; Burdisso, Paula; Benoit, Matthieu; Boisbouvier, Jerome; Rasia, Rodolfo. "Induced folding in RNA recognition by Arabidopsis thaliana DCL1" Nucleic Acids Res. 43, 6607-6619 (2015).
Assembly members:
NB22, polymer, 83 residues, 9160.3879 Da.
Natural source: Common Name: Thale cress Taxonomy ID: 3702 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Arabidopsis thaliana
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
NB22: GHMMHPVRELQERCQQQAEG
LEYKASRSGNTATVEVFIDG
VQVGVAQNPQKKMAQKLAAR
NALAALKEKEIAESKEKHIN
NGN
- assigned_chemical_shifts
- spectral_peak_list
Data type | Count |
13C chemical shifts | 225 |
15N chemical shifts | 74 |
1H chemical shifts | 74 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | NB22_1 | 1 |
2 | NB22_2 | 1 |
3 | NB22_3 | 1 |
Entities:
Entity 1, NB22_1 83 residues - 9160.3879 Da.
1 | GLY | HIS | MET | MET | HIS | PRO | VAL | ARG | GLU | LEU | ||||
2 | GLN | GLU | ARG | CYS | GLN | GLN | GLN | ALA | GLU | GLY | ||||
3 | LEU | GLU | TYR | LYS | ALA | SER | ARG | SER | GLY | ASN | ||||
4 | THR | ALA | THR | VAL | GLU | VAL | PHE | ILE | ASP | GLY | ||||
5 | VAL | GLN | VAL | GLY | VAL | ALA | GLN | ASN | PRO | GLN | ||||
6 | LYS | LYS | MET | ALA | GLN | LYS | LEU | ALA | ALA | ARG | ||||
7 | ASN | ALA | LEU | ALA | ALA | LEU | LYS | GLU | LYS | GLU | ||||
8 | ILE | ALA | GLU | SER | LYS | GLU | LYS | HIS | ILE | ASN | ||||
9 | ASN | GLY | ASN |
Samples:
sample_1: NB22, [U-13C; U-15N; U-2H], 400 uM; miR172ls 500 uM; sodium phosphate 20 mM; TCEP 5 mM; H2O 95%; D2O 5%
sample_conditions_1: ionic strength: 20 mM; pH: 7; pressure: 1 atm; temperature: 298 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|---|---|---|
2D 1H-15N HSQC/HMQC | sample_1 | isotropic | sample_conditions_1 |
3D HNCACB | sample_1 | isotropic | sample_conditions_1 |
HNCoCACB_NB22_RNA (H[N[co[{CA|ca[C]}]]]) | sample_1 | isotropic | sample_conditions_1 |
3D HNCO | sample_1 | isotropic | sample_conditions_1 |
Software:
ANALYSIS v2.1, CCPN - secuential assignment
NMR spectrometers:
- Varian DirectDrive 600 MHz
Related Database Links:
BMRB | 19105 |
DBJ | BAD94606 |
GB | AAF03534 AAF26461 AAG38019 AAG38020 AEE27220 |
REF | NP_001184881 NP_171612 XP_006306578 XP_006418369 |
SP | Q9SP32 |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts