BMRB Entry 19621
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR19621
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Title: 1H, 13C and 15N chemical shift assignments for the cyclic-nucleotide binding homology domain of the KCNH channel from Zebrafish PubMed: 24414223
Deposition date: 2013-11-19 Original release date: 2014-02-11
Authors: Li, Qingxin; Ng, Hui Qi; Kang, Congbao
Citation: Li, Qingxin; Ng, Hui Qi; Kang, Congbao. "(1)H, (13)C and (15)N chemical shift assignments for the cyclic-nucleotide binding homology domain of a KCNH channel." Biomol. NMR Assignments ., .-. (2014).
Assembly members:
CNBHD, polymer, 143 residues, Formula weight is not available
Natural source: Common Name: zebrafish Taxonomy ID: 7955 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Danio rerio
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
CNBHD: MNKELLQLPLFESASRGCLR
SLSLIIKTSFCAPGEFLIRQ
GDALQAIYFVCSGSMEVLKD
NTVLAILGKGDLIGSDSLTK
EQVIKTNANVKALTYCDLQY
ISLKGLREVLRLYPEYAQKF
VSEIQHDLTYNLREGLEHHH
HHH
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 554 |
| 15N chemical shifts | 137 |
| 1H chemical shifts | 833 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | CNBHD | 1 |
Entities:
Entity 1, CNBHD 143 residues - Formula weight is not available
| 1 | MET | ASN | LYS | GLU | LEU | LEU | GLN | LEU | PRO | LEU | ||||
| 2 | PHE | GLU | SER | ALA | SER | ARG | GLY | CYS | LEU | ARG | ||||
| 3 | SER | LEU | SER | LEU | ILE | ILE | LYS | THR | SER | PHE | ||||
| 4 | CYS | ALA | PRO | GLY | GLU | PHE | LEU | ILE | ARG | GLN | ||||
| 5 | GLY | ASP | ALA | LEU | GLN | ALA | ILE | TYR | PHE | VAL | ||||
| 6 | CYS | SER | GLY | SER | MET | GLU | VAL | LEU | LYS | ASP | ||||
| 7 | ASN | THR | VAL | LEU | ALA | ILE | LEU | GLY | LYS | GLY | ||||
| 8 | ASP | LEU | ILE | GLY | SER | ASP | SER | LEU | THR | LYS | ||||
| 9 | GLU | GLN | VAL | ILE | LYS | THR | ASN | ALA | ASN | VAL | ||||
| 10 | LYS | ALA | LEU | THR | TYR | CYS | ASP | LEU | GLN | TYR | ||||
| 11 | ILE | SER | LEU | LYS | GLY | LEU | ARG | GLU | VAL | LEU | ||||
| 12 | ARG | LEU | TYR | PRO | GLU | TYR | ALA | GLN | LYS | PHE | ||||
| 13 | VAL | SER | GLU | ILE | GLN | HIS | ASP | LEU | THR | TYR | ||||
| 14 | ASN | LEU | ARG | GLU | GLY | LEU | GLU | HIS | HIS | HIS | ||||
| 15 | HIS | HIS | HIS |
Samples:
sample_1: CNBHD, [U-100% 15N], 0.2 – 0.8 mM; sodium phosphate 20 mM; sodium chloride 150 mM; DTT 1 mM
sample_2: CNBHD, [U-100% 13C; U-100% 15N], 0.3 – 0.8 mM; sodium phosphate 20 mM; sodium chloride 150 mM; DTT 1 mM
sample_3-D2O: CNBHD, [U-100% 13C; U-100% 15N], 0.5 mM; sodium phosphate 20 mM; sodium chloride 150 mM; DTT 1 mM
sample_conditions_1: ionic strength: 150 mM; pH: 6.5; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
| 3D CBCA(CO)NH | sample_2 | isotropic | sample_conditions_1 |
| 3D HNCA | sample_2 | isotropic | sample_conditions_1 |
| 3D HNCO | sample_2 | isotropic | sample_conditions_1 |
| 3D HNCACB | sample_2 | isotropic | sample_conditions_1 |
| 3D HN(CO)CA | sample_2 | isotropic | sample_conditions_1 |
| 3D 1H-15N NOESY | sample_2 | isotropic | sample_conditions_1 |
| 3D 1H-13C NOESY aliphatic | sample_3-D2O | isotropic | sample_conditions_1 |
| 3D 1H-13C NOESY aromatic | sample_3-D2O | isotropic | sample_conditions_1 |
| 3D H(CCO)NH | sample_2 | isotropic | sample_conditions_1 |
| 3DCCONH | sample_2 | isotropic | sample_conditions_1 |
Software:
ARIA v1.2, Linge, O, . - structure solution
NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing
NMRView, Johnson, One Moon Scientific - chemical shift assignment
TALOS, Cornilescu, Delaglio and Bax - data analysis
X-PLOR NIH, Schwieters, Kuszewski, Tjandra and Clore - structure solution
CYANA, Guntert, Mumenthaler and Wuthrich - structure solution
NMR spectrometers:
- Bruker Avance 600 MHz
- Bruker Avance 700 MHz
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts