BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 34350

Title: Gga-AvBD11 (Avian beta-defensin 11 from Gallus gallus)   PubMed: 31871151

Deposition date: 2019-01-08 Original release date: 2019-12-13

Authors: Meudal, H.; Loth, K.; Delmas, A.; Landon, C.

Citation: Guyot, N.; Meudal, H.; Trapp, S.; Iochmann, S.; Silvestre, A.; Jousset, G.; Labas, V.; Reverdiau, P.; Loth, K.; Herve, V.; Aucagne, V.; Delmas, A.; Rehault-Godbert, S.; Landon, C.. "Structure, function, and evolution of Gga-AvBD11, the archetype of a structural avian-double-beta-defensin family"  Proc. Natl. Acad. Sci. U.S.A. 117, 337-345 (2020).

Assembly members:
entity_1, polymer, 82 residues, 9304.899 Da.

Natural source:   Common Name: Chicken   Taxonomy ID: 9031   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Gallus gallus

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
entity_1: LPRDTSRCVGYHGYCIRSKV CPKPFAAFGTCSWRQKTCCV DTTSDFHTCQDKGGHCVSPK IRCLEEQLGLCPLKRWTCCK EI

Data sets:
Data typeCount
15N chemical shifts74
1H chemical shifts556

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1entity_11

Entities:

Entity 1, entity_1 82 residues - 9304.899 Da.

1   LEUPROARGASPTHRSERARGCYSVALGLY
2   TYRHISGLYTYRCYSILEARGSERLYSVAL
3   CYSPROLYSPROPHEALAALAPHEGLYTHR
4   CYSSERTRPARGGLNLYSTHRCYSCYSVAL
5   ASPTHRTHRSERASPPHEHISTHRCYSGLN
6   ASPLYSGLYGLYHISCYSVALSERPROLYS
7   ILEARGCYSLEUGLUGLUGLNLEUGLYLEU
8   CYSPROLEULYSARGTRPTHRCYSCYSLYS
9   GLUILE

Samples:

sample_1: [1-82]Gga-AvBD11 1.08 mM

sample_conditions_1: ionic strength: 0 mM; pH: 4.5; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 1H-13C HSQCsample_1isotropicsample_conditions_1

Software:

CNS, Brunger, Adams, Clore, Gros, Nilges and Read - refinement

ARIA, Linge, O'Donoghue and Nilges - structure calculation

CcpNmr Analysis, CCPN - chemical shift assignment, peak picking

NMR spectrometers:

  • Bruker AVANCE III HD 700 MHz

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts