BMRB Entry 5553

Name: Solution structure of influenza A virus C4 promoter
Published: 2003-03-14

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR5553

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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: Solution structure of influenza A virus C4 promoter PubMed: 12582241

Deposition date: 2002-10-10 Original release date: 2003-03-14

Authors: Lee, M.-K.; Bae, S.-H.; Park, C.-J.; Cheong, H.-K.; Cheong, C.; Choi, B.-S.

Citation: Lee, M.-K.; Bae, S.-H.; Park, C.-J.; Cheong, H.-K.; Cheong, C.; Choi, B.-S.. "A Single-nucleotide Natural Variation (U4 to C4) in an Influenza A Virus Promoter Exhibits a Large Structural Change: Implications for Differential Viral RNA Synthesis by RNA-dependent RNA Polymerase" Nucleic Acids Res. 31, 1216-1223 (2003).

Assembly members:
C4 promoter of influneza A virus, polymer, 31 residues, Formula weight is not available

Natural source: Common Name: Influenzavirus A Taxonomy ID: 197911 Superkingdom: Viruses Kingdom: not available Genus/species: Influenzavirus A not available

Experimental source: Production method: .

Entity Sequences (FASTA):
C4 promoter of influneza A virus: AGUAGAAACAAGGCUUCGGC CUGCUUUCGCU

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
13C chemical shifts	29
15N chemical shifts	11
31P chemical shifts	18

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	C4 promoter of influneza A virus	1

Entities:

Entity 1, C4 promoter of influneza A virus 31 residues - Formula weight is not available

1

A

G

U

A

G

A

C

A

2

A

G

C

U

C

G

C

3

C

U

G

C

U

C

G

C

4

U

Samples:

sample_1: C4 promoter of influneza A virus 1 mM; H2O 90%; D2O 10%

sample_2: C4 promoter of influneza A virus 1 mM; D2O 99.96%

sample_3: C4 promoter of influneza A virus, [U-13C; U-15N], 1 mM; H2O 90%; D2O 10%

sample_4: C4 promoter of influneza A virus, [U-13C; U-15N], 1 mM; D2O 99.96%

sample_cond_1: pH: .; temperature: . .

Experiments:

Name	Sample	Sample state	Sample conditions
2D NOESY	not available	not available	sample_cond_1
DQF-COSY	not available	not available	sample_cond_1
3D HCCH-COSY	not available	not available	sample_cond_1

Software:

CNS v1.0 - refinement, structure solution

NMRPipe v2.1 - processing

NMR spectrometers:

Varian INOVA 600 MHz