BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 6511

Title: NMR structure of peptide SD

Deposition date: 2005-02-17 Original release date: 2005-09-22

Authors: Murata, T.; Hemmi, H.; Nakamura, S.; Shimizu, K.; Suzuki, Y.; Yamaguchi, I.

Citation: Murata, T.; Hemmi, H.; Nakamura, S.; Shimizu, K.; Suzuki, Y.; Yamaguchi, I.. "Structure, epitope mapping and docking simulation of a gibberellin mimic peptide recognized by an anti-gibberellin A4 antibody 4-B8(8)/E9"  FEBS J. 272, 4938-4948 (2005).

Assembly members:
peptide SD, polymer, 10 residues, Formula weight is not available

Natural source:   Common Name: not applicable   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
peptide SD: ACLPWSDGPC

Data sets:
Data typeCount
1H chemical shifts58

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1peptide SD1

Entities:

Entity 1, peptide SD 10 residues - Formula weight is not available

1   ALACYSLEUPROTRPSERASPGLYPROCYS

Samples:

sample_1: peptide SD 5 mM; phosphate buffer 50 mM; H2O 90%; D2O 10%

sample_cond_1: pH: 5.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D NOESYnot availablenot availablenot available
2D TOCSYnot availablenot availablenot available
DQF-COSYnot availablenot availablenot available
2D ROESYnot availablenot availablenot available

Software:

xwinnmr v2.6 - collection, processing

SPARKY v3 - data analysis

CNS v1.0 - refinement

NMR spectrometers:

  • Bruker AVANCE 800 MHz
  • Bruker AVANCE 600 MHz