BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 6717

Title: Solution NMR structure of the UPF0213 protein BH0048 from Bacillus halodurans. Northeast Structural Genomics target BhR2.

Deposition date: 2005-06-30 Original release date: 2006-04-06

Authors: Aramini, J.; Swapna, G.; Xiao, R.; Ma, L.; Shastry, R.; Ciano, M.; Acton, T.; Liu, J.; Rost, B.; Cort, J.; Kennedy, M.; Montelione, G.

Citation: Aramini, J.; Swapna, G.; Xiao, R.; Ma, L.; Shastry, R.; Ciano, M.; Acton, T.; Liu, J.; Rost, B.; Cort, J.; Kennedy, M.; Montelione, G.. "Solution NMR structure of the UPF0213 protein BH0048 from Bacillus halodurans. Northeast Structural Genomics target BhR2. "  . ., .-..

Assembly members:
BhR2, polymer, 107 residues, Formula weight is not available

Natural source:   Common Name: Bacillus halodurans   Taxonomy ID: 86665   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Bacillus halodurans

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
BhR2: MAGDPMNHYVYILECKDGSW YTGYTTDVDRRIKKHASGKG AKYTRGRGPFRLVATWAFPS KEEAMRWEYEVKHLSRRKKE QLVSLKGGPYENTTKLSTTL EHHHHHH

Data sets:
Data typeCount
1H chemical shifts659
13C chemical shifts443
15N chemical shifts100

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Hypothetical UPF0213 protein BH00481

Entities:

Entity 1, Hypothetical UPF0213 protein BH0048 107 residues - Formula weight is not available

1   METALAGLYASPPROMETASNHISTYRVAL
2   TYRILELEUGLUCYSLYSASPGLYSERTRP
3   TYRTHRGLYTYRTHRTHRASPVALASPARG
4   ARGILELYSLYSHISALASERGLYLYSGLY
5   ALALYSTYRTHRARGGLYARGGLYPROPHE
6   ARGLEUVALALATHRTRPALAPHEPROSER
7   LYSGLUGLUALAMETARGTRPGLUTYRGLU
8   VALLYSHISLEUSERARGARGLYSLYSGLU
9   GLNLEUVALSERLEULYSGLYGLYPROTYR
10   GLUASNTHRTHRLYSLEUSERTHRTHRLEU
11   GLUHISHISHISHISHISHIS

Samples:

sample_1: BhR2, [U-13C; U-15N], 0.67 mM; MES 20 mM; NaCl 100 mM; CaCl2 5 mM; DTT 10 mM; NaN3 0.02%; D2O 5%; H2O 95%

sample_2: BhR2, [U-13C; U-15N], 0.67 mM; MES 20 mM; NaCl 100 mM; CaCl2 5 mM; DTT 10 mM; NaN3 0.02%; D2O 100%

sample_3: BhR2, [U-5% 13C; U-15N], 0.56 mM; MES 20 mM; NaCl 100 mM; CaCl2 5 mM; DTT 10 mM; NaN3 0.02%; D2O 5%; H2O 95%

sample_cond_1: pH: 6.5; temperature: 293 K; ionic strength: 100 mM; pressure: 1 atm

Experiments:

NameSampleSample stateSample conditions
3D 15N-separated NOESYnot availablenot availablenot available
3D 13C-separated NOESYnot availablenot availablenot available
HNHAnot availablenot availablenot available
high resolution CH-HSQCnot availablenot availablenot available
backbone TR exptsnot availablenot availablenot available
TOCSYsnot availablenot availablenot available
HCCH COSYnot availablenot availablenot available

Software:

XWINNMR v3.5pl6 - collection

VNMR v6.1C - collection

NMRPipe v2.3 - processing

Sparky v3.91 - data analysis

AUTOASSIGN v1.15 - data analysis

AUTOSTRUCTURE v2.1.0 - refinement

XPLOR-NIH v2.0.6 - refinement

CNS v1.1 - refinement

PDBstat v3.25 - data analysis

PSVS v1.0 - data analysis

FindCore v1.0 - data analysis

NMR spectrometers:

  • Varian INOVA 750 MHz
  • Bruker AVANCE 500 MHz
  • Varian INOVA 500 MHz
  • Varian INOVA 600 MHz

Related Database Links:

PDB
DBJ BAB03767
REF NP_240914 WP_010896232
SP Q9KGL3

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts