BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 10034

Title: Solution structure of Fibronectin type III domain derived from human KIAA0970 protein

Deposition date: 2006-11-01 Original release date: 2008-08-13

Authors: Kobayashi, N.; Koshiba, S.; Inoue, M.; Hayashi, F.; Kigawa, T.; Yokoyama, S.

Citation: Kobayashi, N.; Koshiba, S.; Inoue, M.; Hayashi, F.; Kigawa, T.; Yokoyama, S.. "Solution structure of Fibronectin type III domain derived from human KIAA0970 protein"  . ., .-..

Assembly members:
Fibronectin type3 domain, polymer, 137 residues, Formula weight is not available

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: cell free synthesis

Entity Sequences (FASTA):
Fibronectin type3 domain: GSSGSSGDEETKAFEALLSN IVKPVASDIQARTVVLTWSP PSSLINGETDESSVPELYGY EVLISSTGKDGKYKSVYVGE ETNITLNDLKPAMDYHAKVQ AEYNSIKGTPSEAEIFTTLS CEPDIPNPPRISGPSSG

Data sets:
Data typeCount
13C chemical shifts577
15N chemical shifts134
1H chemical shifts907

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1KIAA0970 protein1

Entities:

Entity 1, KIAA0970 protein 137 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYASPGLUGLU
2   THRLYSALAPHEGLUALALEULEUSERASN
3   ILEVALLYSPROVALALASERASPILEGLN
4   ALAARGTHRVALVALLEUTHRTRPSERPRO
5   PROSERSERLEUILEASNGLYGLUTHRASP
6   GLUSERSERVALPROGLULEUTYRGLYTYR
7   GLUVALLEUILESERSERTHRGLYLYSASP
8   GLYLYSTYRLYSSERVALTYRVALGLYGLU
9   GLUTHRASNILETHRLEUASNASPLEULYS
10   PROALAMETASPTYRHISALALYSVALGLN
11   ALAGLUTYRASNSERILELYSGLYTHRPRO
12   SERGLUALAGLUILEPHETHRTHRLEUSER
13   CYSGLUPROASPILEPROASNPROPROARG
14   ILESERGLYPROSERSERGLY

Samples:

sample_1: fibronectin type III domain, [U-13C; U-15N], 1.11 mM; Phosphate 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 6.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D 13C-separated NOESYsample_1not availablecondition_1
3D 15N-separated NOESYsample_1not availablecondition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B. A. - data analysis

Kujira v0.901, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

  • Varian UNITY 900 MHz

Related Database Links:

PDB
DBJ BAA76814 BAG11267 BAG63723
EMBL CAG44602 CAG44603 CAH90829 CAI45989
GB AAI32813 AAI36618 AAI44302 EAX08803 EAX08804
REF NP_001073141 NP_001125472 NP_001265367 NP_055738 XP_001152472
SP Q5RBN1 Q9Y2H6

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts