BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 11087

Title: Solution structure of the PH domain of Kindlin-3 from human

Deposition date: 2010-01-15 Original release date: 2011-01-14

Authors: Li, H.; Sato, M.; Koshiba, S.; Watanabe, S.; Harada, T.; Kigawa, T.; Yokoyama, S.

Citation: Li, H.; Sato, M.; Koshiba, S.; Watanabe, S.; Harada, T.; Kigawa, T.; Yokoyama, S.. "Solution structure of the PH domain of Kindlin-3 from human"  . ., .-..

Assembly members:
PH domain, UNP residues 349-478, polymer, 137 residues, Formula weight is not available

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: Cell free synthesis   Host organism: E. coli - cell free

Entity Sequences (FASTA):
PH domain, UNP residues 349-478: GSSGSSGIPELKDHLRIFRP RKLTLKGYRQHWVVFKETTL SYYKSQDEAPGDPIQQLNLK GCEVVPDVNVSGQKFCIKLL VPSPEGMSEIYLRCQDEQQY ARWMAGCRLASKGRTMADSS YTSEVQAILAFLSLQRT

Data sets:
Data typeCount
13C chemical shifts608
15N chemical shifts134
1H chemical shifts956

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1PH domain, UNP residues 349-4781

Entities:

Entity 1, PH domain, UNP residues 349-478 137 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYILEPROGLU
2   LEULYSASPHISLEUARGILEPHEARGPRO
3   ARGLYSLEUTHRLEULYSGLYTYRARGGLN
4   HISTRPVALVALPHELYSGLUTHRTHRLEU
5   SERTYRTYRLYSSERGLNASPGLUALAPRO
6   GLYASPPROILEGLNGLNLEUASNLEULYS
7   GLYCYSGLUVALVALPROASPVALASNVAL
8   SERGLYGLNLYSPHECYSILELYSLEULEU
9   VALPROSERPROGLUGLYMETSERGLUILE
10   TYRLEUARGCYSGLNASPGLUGLNGLNTYR
11   ALAARGTRPMETALAGLYCYSARGLEUALA
12   SERLYSGLYARGTHRMETALAASPSERSER
13   TYRTHRSERGLUVALGLNALAILELEUALA
14   PHELEUSERLEUGLNARGTHR

Samples:

sample_1: PH domain, [U-13C; U-15N], 1.18 mM; TRIS, [U-2H], 20 mM; sodium chloride 100 mM; DTT, [U-2H], 1 mM; sodium azide 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 296 K

Experiments:

NameSampleSample stateSample conditions
3D 15N-separated NOESYsample_1isotropiccondition_1
3D 13C-separated NOESYsample_1isotropiccondition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9820, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - structure solution

NMR spectrometers:

  • Bruker AVANCE 800 MHz

Related Database Links:

PDB
DBJ BAC04220
GB AAH04347 AAH13366 AAH15584 AAI09489 AAM19736
REF NP_001032695 NP_113659 XP_001118313 XP_002821634 XP_003639703
SP Q32LP0
TPG DAA13656

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts