BMRB Entry 11281
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11281
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Title: Structure of the UBX domain in Mouse UBX Domain-Containing Protein 2
Deposition date: 2010-08-09 Original release date: 2011-08-18
Authors: Zhao, C.; Yoneyama, M.; Koshiba, S.; Watanabe, S.; Harada, T.; Kigawa, T.; Yokoyama, S.
Citation: Zhao, C.; Yoneyama, M.; Koshiba, S.; Watanabe, S.; Harada, T.; Kigawa, T.; Yokoyama, S.. "Structure of the UBX domain in Mouse UBX Domain-Containing Protein 2" . ., .-..
Assembly members:
UBX domain, polymer, 109 residues, Formula weight is not available
Natural source: Common Name: house mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus
Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free
Entity Sequences (FASTA):
UBX domain: GSSGSSGRDRSTIARIQFRL
PDGSSFTNQFPSDAPLEEAR
QFAAQTVGNTYGNFSLATMF
PRREFTREDYKRRLLDLELA
PSASVVLLPAGRPATSIVHS
SSGDILMID
- assigned_chemical_shifts
Data type | Count |
13C chemical shifts | 450 |
15N chemical shifts | 99 |
1H chemical shifts | 693 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | UBX domain | 1 |
Entities:
Entity 1, UBX domain 109 residues - Formula weight is not available
1 | GLY | SER | SER | GLY | SER | SER | GLY | ARG | ASP | ARG | ||||
2 | SER | THR | ILE | ALA | ARG | ILE | GLN | PHE | ARG | LEU | ||||
3 | PRO | ASP | GLY | SER | SER | PHE | THR | ASN | GLN | PHE | ||||
4 | PRO | SER | ASP | ALA | PRO | LEU | GLU | GLU | ALA | ARG | ||||
5 | GLN | PHE | ALA | ALA | GLN | THR | VAL | GLY | ASN | THR | ||||
6 | TYR | GLY | ASN | PHE | SER | LEU | ALA | THR | MET | PHE | ||||
7 | PRO | ARG | ARG | GLU | PHE | THR | ARG | GLU | ASP | TYR | ||||
8 | LYS | ARG | ARG | LEU | LEU | ASP | LEU | GLU | LEU | ALA | ||||
9 | PRO | SER | ALA | SER | VAL | VAL | LEU | LEU | PRO | ALA | ||||
10 | GLY | ARG | PRO | ALA | THR | SER | ILE | VAL | HIS | SER | ||||
11 | SER | SER | GLY | ASP | ILE | LEU | MET | ILE | ASP |
Samples:
sample_1: UBX domain, [U-13C; U-15N], 1.18 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%
condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 296.0 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|---|---|---|
3D 13C-separated NOESY | sample_1 | isotropic | condition_1 |
3D 15N-separated NOESY | sample_1 | isotropic | condition_1 |
Software:
xwinnmr v2.6, Bruker - collection
NMRPipe v20031121, Delaglio, F. - processing
NMRView v5.0.4, Johnson, B. A. - data analysis
Kujira v0.9748, Kobayashi, N. - data analysis
CYANA v2.0.17, Guntert, P. - refinement, structure solution
NMR spectrometers:
- Bruker AVANCE 800 MHz
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts