BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 11281

Title: Structure of the UBX domain in Mouse UBX Domain-Containing Protein 2

Deposition date: 2010-08-09 Original release date: 2011-08-18

Authors: Zhao, C.; Yoneyama, M.; Koshiba, S.; Watanabe, S.; Harada, T.; Kigawa, T.; Yokoyama, S.

Citation: Zhao, C.; Yoneyama, M.; Koshiba, S.; Watanabe, S.; Harada, T.; Kigawa, T.; Yokoyama, S.. "Structure of the UBX domain in Mouse UBX Domain-Containing Protein 2"  . ., .-..

Assembly members:
UBX domain, polymer, 109 residues, Formula weight is not available

Natural source:   Common Name: house mouse   Taxonomy ID: 10090   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Mus musculus

Experimental source:   Production method: cell free synthesis   Host organism: E. coli - cell free

Entity Sequences (FASTA):
UBX domain: GSSGSSGRDRSTIARIQFRL PDGSSFTNQFPSDAPLEEAR QFAAQTVGNTYGNFSLATMF PRREFTREDYKRRLLDLELA PSASVVLLPAGRPATSIVHS SSGDILMID

Data sets:
Data typeCount
13C chemical shifts450
15N chemical shifts99
1H chemical shifts693

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1UBX domain1

Entities:

Entity 1, UBX domain 109 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYARGASPARG
2   SERTHRILEALAARGILEGLNPHEARGLEU
3   PROASPGLYSERSERPHETHRASNGLNPHE
4   PROSERASPALAPROLEUGLUGLUALAARG
5   GLNPHEALAALAGLNTHRVALGLYASNTHR
6   TYRGLYASNPHESERLEUALATHRMETPHE
7   PROARGARGGLUPHETHRARGGLUASPTYR
8   LYSARGARGLEULEUASPLEUGLULEUALA
9   PROSERALASERVALVALLEULEUPROALA
10   GLYARGPROALATHRSERILEVALHISSER
11   SERSERGLYASPILELEUMETILEASP

Samples:

sample_1: UBX domain, [U-13C; U-15N], 1.18 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 296.0 K

Experiments:

NameSampleSample stateSample conditions
3D 13C-separated NOESYsample_1isotropiccondition_1
3D 15N-separated NOESYsample_1isotropiccondition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B. A. - data analysis

Kujira v0.9748, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

  • Bruker AVANCE 800 MHz

Related Database Links:

PDB
DBJ BAC97908

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts