BMRB Entry 15593

Name: Solution structure of human protein C6orf130, a putative macro domain
Published: 2008-01-23

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PDB ID: 2lgr
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR15593
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: Solution structure of human protein C6orf130, a putative macro domain

Deposition date: 2007-12-12 Original release date: 2008-01-23

Authors: Volkman, B.; Lytle, B.; Peterson, F.

Citation: Lytle, B.; Peterson, F.; Volkman, B.. "Solution structure of human C6orf130, a putative macro domain" To be published ., .-..

Assembly members:
C6orf130, polymer, 160 residues, 18050.891 Da.

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source: Production method: cell free synthesis Host organism: wheat germ - cell free

Entity Sequences (FASTA):
C6orf130: GHHHHHHLEASSLNEDPEGS RITYVKGDLFACPKTDSLAH CISEDCRMGAGIAVLFKKKF GGVQELLNQQKKSGEVAVLK RDGRYIYYLITKKRASHKPT YENLQKSLEAMKSHCLKNGV TDLSMPRIGCGLDRLQWENV SAMIEEVFEATDIKITVYTL

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	663
15N chemical shifts	164
1H chemical shifts	1039

Time Domain Data

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	C6orf130	1

Entities:

Entity 1, C6orf130 160 residues - 18050.891 Da.

1	GLY	HIS	HIS	HIS	HIS	HIS	HIS	LEU	GLU	ALA
2	SER	SER	LEU	ASN	GLU	ASP	PRO	GLU	GLY	SER
3	ARG	ILE	THR	TYR	VAL	LYS	GLY	ASP	LEU	PHE
4	ALA	CYS	PRO	LYS	THR	ASP	SER	LEU	ALA	HIS
5	CYS	ILE	SER	GLU	ASP	CYS	ARG	MET	GLY	ALA
6	GLY	ILE	ALA	VAL	LEU	PHE	LYS	LYS	LYS	PHE
7	GLY	GLY	VAL	GLN	GLU	LEU	LEU	ASN	GLN	GLN
8	LYS	LYS	SER	GLY	GLU	VAL	ALA	VAL	LEU	LYS
9	ARG	ASP	GLY	ARG	TYR	ILE	TYR	TYR	LEU	ILE
10	THR	LYS	LYS	ARG	ALA	SER	HIS	LYS	PRO	THR
11	TYR	GLU	ASN	LEU	GLN	LYS	SER	LEU	GLU	ALA
12	MET	LYS	SER	HIS	CYS	LEU	LYS	ASN	GLY	VAL
13	THR	ASP	LEU	SER	MET	PRO	ARG	ILE	GLY	CYS
14	GLY	LEU	ASP	ARG	LEU	GLN	TRP	GLU	ASN	VAL
15	SER	ALA	MET	ILE	GLU	GLU	VAL	PHE	GLU	ALA
16	THR	ASP	ILE	LYS	ILE	THR	VAL	TYR	THR	LEU

Samples:

sample: C6orf130, [U-100% 13C; U-100% 15N], 0.55 mM; BisTris 20 mM; sodium chloride 200 mM; DTT 2 mM; D2O, [U-100% 2H], 7%; H2O 93%

sample_conditions_1: ionic strength: 200 mM; pH: 6.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D_15N-separated_NOESY	sample	isotropic	sample_conditions_1
3D_13C-separated_NOESY	sample	isotropic	sample_conditions_1
3D_13C-separated_NOESY (AROMATIC)	sample	isotropic	sample_conditions_1

Software:

X-PLOR NIH v2.9.3, Schwieters, Kuszewski, Tjandra and Clore - refinement

xwinnmr v3.5, Bruker Biospin - collection

NMRPipe v2004, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

XEASY v1.3, Bartels et al. - data analysis

SPSCAN v1.1.0, Glaser - peak picking

GARANT v2.1, Bartels, Guntert, Billeter and Wuthrich - chemical shift assignment

CYANA v2.1, Guntert, Mumenthaler and Wuthrich - structure solution

NMR spectrometers:

Bruker DRX 600 MHz

BMRB	10164 17421
PDB	2EEE 2L8R 2LGR 4J5Q 4J5R 4J5S
DBJ	BAF83628 BAG36161
GB	AAH11709 AIC53444 AIC58012 EAX04010 EAX04011
REF	NP_001181654 NP_659500 XP_001117219 XP_001117235 XP_001174030
SP	Q9Y530

Biological Magnetic Resonance Data Bank