BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 16337

Title: Backbone resonance assignments for the aminoglycoside phosphotransferase(3')-IIIa   PubMed: 19898995

Deposition date: 2009-06-08 Original release date: 2009-11-18

Authors: Ozen, Can; Norris, Adrianne; Whittemore, Neil; Steren, Carlos

Citation: Serpersu, Engin; Ozen, Can; Norris, Adrianne; Steren, Carlos; Whittemore, Neil. "Backbone resonance assignments of a promiscuous aminoglycoside antibiotic resistance enzyme; the aminoglycoside phosphotransferase(3')-IIIa."  Biomol. NMR Assignments 4, 9-12 (2010).

Assembly members:
APH-tobramycin, polymer, 264 residues, 30.974 Da.
TOY, non-polymer, 467.514 Da.

Natural source:   Common Name: Streptococcus faecalis   Taxonomy ID: 1351   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Enterococcus faecalis

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
APH-tobramycin: MAKMRISPELKKLIEKYRCV KDTEGMSPAKVYKLVGENEN LYLKMTDSRYKGTTYDVERE KDMMLWLEGKLPVPKVLHFE RHDGWSNLLMSEADGVLCSE EYEDEQSPEKIIELYAECIR LFHSIDISDCPYTNSLDSRL AELDYLLNNDLADVDCENWE EDTPFKDPRELYDFLKTEKP EEELVFSHGDLGDSNIFVKD GKVSGFIDLGRSGRADKWYD IAFCVRSIREDIGEEQYVEL FFDLLGIKPDWEKIKYYILL DELF

Data sets:
Data typeCount
13C chemical shifts631
15N chemical shifts215
1H chemical shifts217

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1enzyme1
2tobramycin2

Entities:

Entity 1, enzyme 264 residues - 30.974 Da.

1   METALALYSMETARGILESERPROGLULEU
2   LYSLYSLEUILEGLULYSTYRARGCYSVAL
3   LYSASPTHRGLUGLYMETSERPROALALYS
4   VALTYRLYSLEUVALGLYGLUASNGLUASN
5   LEUTYRLEULYSMETTHRASPSERARGTYR
6   LYSGLYTHRTHRTYRASPVALGLUARGGLU
7   LYSASPMETMETLEUTRPLEUGLUGLYLYS
8   LEUPROVALPROLYSVALLEUHISPHEGLU
9   ARGHISASPGLYTRPSERASNLEULEUMET
10   SERGLUALAASPGLYVALLEUCYSSERGLU
11   GLUTYRGLUASPGLUGLNSERPROGLULYS
12   ILEILEGLULEUTYRALAGLUCYSILEARG
13   LEUPHEHISSERILEASPILESERASPCYS
14   PROTYRTHRASNSERLEUASPSERARGLEU
15   ALAGLULEUASPTYRLEULEUASNASNASP
16   LEUALAASPVALASPCYSGLUASNTRPGLU
17   GLUASPTHRPROPHELYSASPPROARGGLU
18   LEUTYRASPPHELEULYSTHRGLULYSPRO
19   GLUGLUGLULEUVALPHESERHISGLYASP
20   LEUGLYASPSERASNILEPHEVALLYSASP
21   GLYLYSVALSERGLYPHEILEASPLEUGLY
22   ARGSERGLYARGALAASPLYSTRPTYRASP
23   ILEALAPHECYSVALARGSERILEARGGLU
24   ASPILEGLYGLUGLUGLNTYRVALGLULEU
25   PHEPHEASPLEULEUGLYILELYSPROASP
26   TRPGLULYSILELYSTYRTYRILELEULEU
27   ASPGLULEUPHE

Entity 2, tobramycin - C18 H37 N5 O9 - 467.514 Da.

1   TOY

Samples:

sample_1: APH-tobramycin, [U-13C; U-15N; U-2H], 250 uM; Tris-HCl 25 mM; sodium chloride 50 mM; DTT 1 mM; H2O 93%; D2O 7%

sample_conditions_1: ionic strength: 50 mM; pH: 7.4; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D HNCAsample_1isotropicsample_conditions_1
3D HN(CO)CAsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1

Software:

NMRView v5, Johnson, One Moon Scientific - data analysis

NMR spectrometers:

  • Varian DMX 600 MHz
  • Varian DMX 900 MHz

Related Database Links:

PDB
5 no
. . aminoglycoside phosphotransferase [Enterococcus faecalis] neomycin phosphotransferase II [Shuttle vector pSU7] neomycin phosphotransferase II [Shuttle vector pSU23] aminoglycoside phosphotransferase [Staphylococcus aureus] aminoglycoside phosphotransferase [Binary vector pUB-GW-GFP] aminoglycoside phosphotransferase [synthetic construct] unnamed protein product [Enterococcus faecalis] aph3 [Escherichia coli] 3'5''-aminoglycoside phosphotransferase [synthetic construct] aminoglycoside phosphotransferase type III [Enterococcus faecalis] aminocyclitol-3'-phosphotransferase [Staphylococcus aureus] kanamycin resistance protein [Plasmid pIP1433] 3'5''-aminoglycoside phosphotransferase [synthetic construct] 3'5'-aminoglycoside phosphotransferase [Staphylococcus aureus] aminoglycoside phosphotransferase A3 [Tn917 delivery vector pAJ005] kanamycin resistance protein - Campylobacter coli plasmid pIP1433 phosphotransferase,aminoglycoside MULTISPECIES: aminoglycoside 3'-phosphotransferase [Bacteria] aminoglycoside phosphotransferase APH(3') [Staphylococcus aureus] MULTISPECIES: aminoglycoside phosphotransferase APH(3') [Bacteria] aminoglycoside phosphotransferase APH(3'), partial [Enterococcus faecalis] MULTISPECIES: aminoglycoside phosphotransferase APH(3'), partial [Bacilli] RecName: Full=Aminoglycoside 3'-phosphotransferase; AltName: Full=APH(3')III; AltName: Full=Kanamycin kinase, type III; AltName RecName: Full=Aminoglycoside 3'-phosphotransferase; AltName: Full=APH(3')III; AltName: Full=Kanamycin kinase, type III; AltName

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts