BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 18499

Title: YAP WW1 in complex with a Smad7 derived peptide.   PubMed: 22921829

Deposition date: 2012-06-04 Original release date: 2012-11-19

Authors: Macias, Maria; Aragon, Eric; Goerner, Nina; Xi, Qiaoran; Lopes, Tiago; Gao, Sheng; Massague, Joan

Citation: Aragon, Eric; Goerner, Nina; Xi, Qiaoran; Gomes, Tiago; Gao, Sheng; Massague, Joan; Macias, Maria. "Structural Basis for the Versatile Interactions of Smad7 with Regulator WW Domains in TGF-beta Pathways"  Structure 20, 1726-1736 (2012).

Assembly members:
YAPWW1, polymer, 36 residues, 4151.635 Da.
SMAD7, polymer, 14 residues, 1593.747 Da.

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
YAPWW1: DVPLPAGWEMAKTSSGQRYF LNHIDQTTTWQDPRKA
SMAD7: GESPPPPYSRYPMD

Data sets:
Data typeCount
1H chemical shifts269

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1YAP WW11
2Smad7 derived peptide2

Entities:

Entity 1, YAP WW1 36 residues - 4151.635 Da.

1   ASPVALPROLEUPROALAGLYTRPGLUMET
2   ALALYSTHRSERSERGLYGLNARGTYRPHE
3   LEUASNHISILEASPGLNTHRTHRTHRTRP
4   GLNASPPROARGLYSALA

Entity 2, Smad7 derived peptide 14 residues - 1593.747 Da.

1   GLYGLUSERPROPROPROPROTYRSERARG
2   TYRPROMETASP

Samples:

Homonuclear: YAPWW1 1 mM; SMAD7 2 mM; TRIS, [U-100% 2H], 20 mM; sodium chloride 100 mM; H2O 90%; D2O 10%

15N13C: YAPWW1, [U-100% 13C; U-100% 15N], 1 mM; SMAD7 3 mM; TRIS, [U-100% 2H], 20 mM; sodium chloride 100 mM; H2O 90%; D2O 10%

sample_conditions_1: pH: 7.2; pressure: 1 atm; temperature: 285 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQC15N13Cisotropicsample_conditions_1
2D 1H-1H TOCSYHomonuclearisotropicsample_conditions_1
2D 1H-1H NOESYHomonuclearisotropicsample_conditions_1
3D CBCA(CO)NH15N13Cisotropicsample_conditions_1
3D HNCACB15N13Cisotropicsample_conditions_1

Software:

TOPSPIN, Bruker Biospin - collection

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

CARA, Keller and Wuthrich - chemical shift assignment, peak picking

CNSSOLVE, Brunger, Adams, Clore, Gros, Nilges and Read - structure solution

NMR spectrometers:

  • Bruker Avance 600 MHz

Related Database Links:

BMRB 17539 17540
PDB
DBJ BAE34009 BAJ41471
EMBL CAA56672
GB EAW67012 EAW67014 EPY79954
REF NP_001269026 NP_001269027 NP_001269028 NP_006097 XP_002799821