BMRB Entry 19057

Name: brevinin-2-related peptide, an antimicrobial peptide derived from frog skin
Published: 2014-09-19

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR19057

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: brevinin-2-related peptide, an antimicrobial peptide derived from frog skin PubMed: 25044683

Deposition date: 2013-02-27 Original release date: 2014-09-19

Authors: Chatterjee, Chiradip

Citation: Bandyopadhyay, Susmita; Ng, Boon Yee; Chong, Charmaine; Lim, Ming Zhen; Gill, Sonia Kiran; Lee, Ke Hui; Sivaraman, J.; Chatterjee, Chiradip. "Micelle bound structure and DNA interaction of brevinin-2-related peptide, an antimicrobial peptide derived from frog skin." J. Pept. Sci. 20, 811-821 (2014).

Assembly members:
svensds, polymer, 21 residues, Formula weight is not available

Natural source: Common Name: mink frog Taxonomy ID: 190274 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Rana septentrionalis

Experimental source: Production method: chemical synthesis Host organism: Chemical synthesis

Entity Sequences (FASTA):
svensds: GIWDTIKSMGKVFAGKTLQN L

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
1H chemical shifts	135

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	amino acids	1

Entities:

Entity 1, amino acids 21 residues - Formula weight is not available

1

GLY

ILE

TRP

ASP

THR

ILE

LYS

SER

MET

GLY

2

LYS

VAL

PHE

ALA

GLY

LYS

THR

LEU

GLN

ASN

3

LEU

Samples:

sample_1: svensds 2 mM; SDS, [U-100% 2H], 100 mM; DPC, [U-100% 2H], 100 mM; D2O 10%; H2O 90%

sample_conditions_1: ionic strength: 1 M; pH: 4.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1

Software:

SPARKY, Goddard - chemical shift assignment

NMR spectrometers:

Bruker DRX 800 MHz
Bruker DRX 400 MHz