BMRB Entry 25335
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, SPARTA
BMRB Entry DOI: doi:10.13018/BMR25335
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Title: Backbone and 1H assignments for VG16KRKP, an antimicrobial peptide in LPS
Deposition date: 2014-11-13 Original release date: 2014-12-22
Authors: Bhunia, Anirban; Datta, Aritreyee
Citation: Bhunia, Anirban; Datta, Aritreyee. "denovo design of antimicrobial peptide:insights into outer membrane permeabilisation, LPs fragmentation and application in treating plant disease" Not known ., .-..
Assembly members:
entity, polymer, 17 residues, 1765.171 Da.
Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: not available Kingdom: not available Genus/species: not available not available
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
entity: VARGWKRKCPLFGKGGG
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 100 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | entity | 1 |
Entities:
Entity 1, entity 17 residues - 1765.171 Da.
| 1 | VAL | ALA | ARG | GLY | TRP | LYS | ARG | LYS | CYS | PRO | ||||
| 2 | LEU | PHE | GLY | LYS | GLY | GLY | GLY |
Samples:
sample_1: H2O 90%; D2O 10%; TSP 1 mM; entity 1 mM
sample_conditions_1: temperature: 298 K; pH: 4.5; pressure: 1 atm; ionic strength: 0 M
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-1H NOESY | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-1H TOCSY | sample_1 | isotropic | sample_conditions_1 |
Software:
CYANA v2.1, Guntert, Mumenthaler and Wuthrich - structure solution
NMR spectrometers:
- Bruker DRX 500 MHz