BMRB Entry 4969
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR4969
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Title: Backbone 1H, 13C and 15N chemical shift assignments for the Brucella D4.4 VH antibody fragment PubMed: 12093273
Deposition date: 2001-03-07 Original release date: 2002-12-23
Authors: Vranken, Wim
Citation: Vranken, Wim; Tolkatchev, Dmitri; Xu, Ping; Tanha, Jamshid; Chen, Zhigang; Narang, Saran; Ni, Feng. "Solution Structure of a Llama Single-domain Antibody with Hydrophobic Residues typical of the VH/VL Interface" Biochemistry 41, 8570-8579 (2002).
Assembly members:
VH antibody fragment, polymer, 135 residues, Formula weight is not available
Natural source: Common Name: Llama Taxonomy ID: 9844 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Lama glama
Experimental source: Production method: recombinant technology
Entity Sequences (FASTA):
VH antibody fragment: DVQLQASGGGLVQPGGSLRV
SCAASGFTFSSYHMAWVRQA
PGKGLEWVSTINPGDGSTYY
ADSVKGRFTISRDNAKNTLY
LQMNSLKSEDTAVYYCAKYS
GGALDAWGQGTQVTVSSQSE
QKLISEEDLNHHHHH
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 360 |
| 15N chemical shifts | 140 |
| 1H chemical shifts | 861 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | Bruc D4.4 VH fragment | 1 |
Entities:
Entity 1, Bruc D4.4 VH fragment 135 residues - Formula weight is not available
| 1 | ASP | VAL | GLN | LEU | GLN | ALA | SER | GLY | GLY | GLY | ||||
| 2 | LEU | VAL | GLN | PRO | GLY | GLY | SER | LEU | ARG | VAL | ||||
| 3 | SER | CYS | ALA | ALA | SER | GLY | PHE | THR | PHE | SER | ||||
| 4 | SER | TYR | HIS | MET | ALA | TRP | VAL | ARG | GLN | ALA | ||||
| 5 | PRO | GLY | LYS | GLY | LEU | GLU | TRP | VAL | SER | THR | ||||
| 6 | ILE | ASN | PRO | GLY | ASP | GLY | SER | THR | TYR | TYR | ||||
| 7 | ALA | ASP | SER | VAL | LYS | GLY | ARG | PHE | THR | ILE | ||||
| 8 | SER | ARG | ASP | ASN | ALA | LYS | ASN | THR | LEU | TYR | ||||
| 9 | LEU | GLN | MET | ASN | SER | LEU | LYS | SER | GLU | ASP | ||||
| 10 | THR | ALA | VAL | TYR | TYR | CYS | ALA | LYS | TYR | SER | ||||
| 11 | GLY | GLY | ALA | LEU | ASP | ALA | TRP | GLY | GLN | GLY | ||||
| 12 | THR | GLN | VAL | THR | VAL | SER | SER | GLN | SER | GLU | ||||
| 13 | GLN | LYS | LEU | ILE | SER | GLU | GLU | ASP | LEU | ASN | ||||
| 14 | HIS | HIS | HIS | HIS | HIS |
Samples:
sample1: VH antibody fragment, [U-13C; U-15N], 0.4 – 0.6 mM; sodium phosphate buffer 10 mM; NaCl 150 mM; EDTA 0.2 mM
cond1: ionic strength: 0.095 M; pH: 6.8; temperature: 303 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 15N HSQC | not available | not available | not available |
| 13C HSQC | not available | not available | not available |
| HNCA | not available | not available | not available |
| HNcoCA | not available | not available | not available |
| HNCACB | not available | not available | not available |
| CBCAcoNH | not available | not available | not available |
| HBHAcoNH | not available | not available | not available |
| 13C TOCSY | not available | not available | not available |
| combined 15N/13C 3D NOESY | not available | not available | not available |
Software:
NMRview v4.1.3 - Data analysis, Data visualization
NMRPipe v1.7 - Data processing
NMR spectrometers:
- Bruker Avance 800 MHz
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts