BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 5898

Title: Backbone 1H, 13C and 15N resonance assignments for the 24.4 kDa human gankyrin protein   PubMed: 15379554

Deposition date: 2003-08-05 Original release date: 2004-10-25

Authors: Yuan, Chunhua; Li, Junan; Poi, Mingjye; Byeon, In-Ja; Tsai, Ming-Daw

Citation: Yuan, Chunhua; Li, Junan; Mahajan, A.; Poi, Mingjye; Byeon, In-Ja; Tsai, Ming-Daw. "Solution structure of the human oncogenic protein gankyrin containing seven ankyrin repeats and analysis of its structure--function relationship."  Biochemistry 43, 12152-12161 (2004).

Assembly members:
gankyrin, polymer, 226 residues, Formula weight is not available

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):
gankyrin: MEGCVSNLMVCNLAYSGKLE ELKESILADKSLATRTDQDS RTALHWACSAGHTEIVEFLL QLGVPVNDKDDAGWSPLHIA ASAGRDEIVKALLGKGAQVN AVNQNGCTPLHYAASKNRHE IAVMLLEGGANPDAKDHYEA TAMHRAAAKGNLKMIHILLY YKASTNIQDTEGNTPLHLAC DEERVEEAKLLVSQGASIYI ENKEEKTPLQVAKGGLGLIL KRMVEG

Data sets:
Data typeCount
1H chemical shifts428
13C chemical shifts642
15N chemical shifts217

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1gankyrin1

Entities:

Entity 1, gankyrin 226 residues - Formula weight is not available

1   METGLUGLYCYSVALSERASNLEUMETVAL
2   CYSASNLEUALATYRSERGLYLYSLEUGLU
3   GLULEULYSGLUSERILELEUALAASPLYS
4   SERLEUALATHRARGTHRASPGLNASPSER
5   ARGTHRALALEUHISTRPALACYSSERALA
6   GLYHISTHRGLUILEVALGLUPHELEULEU
7   GLNLEUGLYVALPROVALASNASPLYSASP
8   ASPALAGLYTRPSERPROLEUHISILEALA
9   ALASERALAGLYARGASPGLUILEVALLYS
10   ALALEULEUGLYLYSGLYALAGLNVALASN
11   ALAVALASNGLNASNGLYCYSTHRPROLEU
12   HISTYRALAALASERLYSASNARGHISGLU
13   ILEALAVALMETLEULEUGLUGLYGLYALA
14   ASNPROASPALALYSASPHISTYRGLUALA
15   THRALAMETHISARGALAALAALALYSGLY
16   ASNLEULYSMETILEHISILELEULEUTYR
17   TYRLYSALASERTHRASNILEGLNASPTHR
18   GLUGLYASNTHRPROLEUHISLEUALACYS
19   ASPGLUGLUARGVALGLUGLUALALYSLEU
20   LEUVALSERGLNGLYALASERILETYRILE
21   GLUASNLYSGLUGLULYSTHRPROLEUGLN
22   VALALALYSGLYGLYLEUGLYLEUILELEU
23   LYSARGMETVALGLUGLY

Samples:

sample_1: gankyrin, [U-13C; U-15N; U-70% 2H], 0.4 – 0.5 mM; HEPES 5 mM; EDTA 1 uM; DTT 1 mM

Ex-cond_1: pH: 7.4; temperature: 300 K

Experiments:

NameSampleSample stateSample conditions
TROSY-HNCAnot availablenot availablenot available
TROSY-HN(CO)CAnot availablenot availablenot available
TROSY-HNCACBnot availablenot availablenot available
TROSY-HNCOnot availablenot availablenot available
15N-edited NOESY-HSQCnot availablenot availablenot available

Software:

XWINNMR v3.1 -

NMR spectrometers:

  • Bruker DMX 600 MHz
  • Bruker DRX 800 MHz

Related Database Links:

PDB
DBJ BAA33215 BAA34594 BAE87161 BAE87972 BAE88401
GB AAH11960 AAV38495 AAX41449 AAY18907 ACT64478
REF NP_001248034 NP_002805 XP_001926942 XP_002763200 XP_002832022
SP O75832

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts