BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 7095

Title: Solution structure of BC059385 from Homo sapiens   PubMed: 17567738

Deposition date: 2006-05-05 Original release date: 2008-07-15

Authors: Volkman, B.; de la Cruz, N.; Lytle, B.; Peterson, F.

Citation: de la Cruz, N.; Peterson, F.; Lytle, B.; Volkman, B.. "Solution structure of a membrane-anchored ubiquitin-fold (MUB) protein from Homo sapiens."  Protein Sci. 16, 1479-1484 (2007).

Assembly members:
Ubiquitin-like protein 3, polymer, 125 residues, Formula weight is not available

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):
Ubiquitin-like protein 3: GHHHHHHLESSNVPADMINL RLILVSGKTKEFLFSPNDSA SDIAKHVYDNWPMDWEEEQV SSPNILRLIYQGRFLHGNVT LGALKLPFGKTTVMHLVARE TLPEPNSQGQRNREKTGESN CCVIL

Data sets:
Data typeCount
13C chemical shifts406
15N chemical shifts91
1H chemical shifts664

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Ubiquitin-like protein 31

Entities:

Entity 1, Ubiquitin-like protein 3 125 residues - Formula weight is not available

1   GLYHISHISHISHISHISHISLEUGLUSER
2   SERASNVALPROALAASPMETILEASNLEU
3   ARGLEUILELEUVALSERGLYLYSTHRLYS
4   GLUPHELEUPHESERPROASNASPSERALA
5   SERASPILEALALYSHISVALTYRASPASN
6   TRPPROMETASPTRPGLUGLUGLUGLNVAL
7   SERSERPROASNILELEUARGLEUILETYR
8   GLNGLYARGPHELEUHISGLYASNVALTHR
9   LEUGLYALALEULYSLEUPROPHEGLYLYS
10   THRTHRVALMETHISLEUVALALAARGGLU
11   THRLEUPROGLUPROASNSERGLNGLYGLN
12   ARGASNARGGLULYSTHRGLYGLUSERASN
13   CYSCYSVALILELEU

Samples:

sample_1: Ubiquitin-like protein 3, [U-15N; U-13C], 0.5 mM; deuterated sodium acetate 10 mM; NaCl 100 mM; Dithiothreitol 2 mM; H2O 90%; D2O 10%

sample_cond_1: ionic strength: 106 mM; pH: 5.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D 15N-separated NOESYnot availablenot availablenot available
3D 13C-separated NOESYnot availablenot availablenot available
3D 13C-separated NOESY (AROMATIC)not availablenot availablenot available

Software:

xwinnmr v3.5 - collection

NMRPipe v2004 - processing

XEASY v1.3 - data analysis

SPSCAN v1.1.0 - data analysis

GARANT v2.1 - data analysis

CYANA v2.1 - structural calculation

X-PLOR NIH v2.9.3 - refinement

NMR spectrometers:

  • Bruker DRX 600 MHz

Related Database Links:

PDB
DBJ BAE22201 BAE26780 BAG34788 BAG51754
EMBL CAB45762 CAG32280 CAG38489 CAL38126 CAL38242
GB AAD02323 AAD02324 AAD02325 AAH24507 AAH25595
REF NP_001012847 NP_001015030 NP_001033233 NP_001244722 NP_009037
SP O95164 Q2TA46 Q5BJT2 Q9Z2M6
TPG DAA23938

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts