==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 10-DEC-97 1A1F . COMPND 2 MOLECULE: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*AP*CP*C)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.ELROD-ERICKSON,T.E.BENSON,C.O.PABO . 84 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6711.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 52.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 10.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 25 29.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 103 A R 0 0 184 0, 0.0 14,-0.2 0, 0.0 13,-0.1 0.000 360.0 360.0 360.0 120.6 -14.5 8.8 58.5 2 104 A P + 0 0 102 0, 0.0 2,-0.4 0, 0.0 13,-0.2 0.823 360.0 67.5 -56.7 -42.9 -15.1 5.1 59.2 3 105 A Y E -A 14 0A 97 11,-1.9 11,-2.9 2,-0.0 2,-0.3 -0.711 64.1-172.0 -92.9 132.7 -11.5 4.0 59.7 4 106 A A E -A 13 0A 34 -2,-0.4 9,-0.2 9,-0.3 8,-0.1 -0.930 28.1-117.7-122.8 146.8 -9.5 5.1 62.7 5 107 A C - 0 0 8 7,-2.2 5,-0.3 -2,-0.3 7,-0.0 -0.739 20.5-158.8 -83.6 118.5 -5.9 4.8 63.6 6 108 A P + 0 0 113 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 0.365 52.8 119.9 -78.9 3.3 -5.7 2.7 66.8 7 109 A V S > S- 0 0 60 3,-0.2 3,-1.5 1,-0.1 -2,-0.1 -0.633 81.9 -81.3 -76.9 129.7 -2.3 4.0 67.7 8 110 A E T 3 S- 0 0 184 -2,-0.4 -1,-0.1 1,-0.3 3,-0.1 0.116 104.0 -10.6 -31.6 122.0 -2.2 5.8 71.0 9 111 A S T 3 S+ 0 0 112 1,-0.2 2,-0.6 -3,-0.1 -1,-0.3 0.791 94.6 129.7 53.2 32.4 -3.4 9.4 70.9 10 112 A C < - 0 0 29 -3,-1.5 -5,-0.2 -5,-0.3 -3,-0.2 -0.904 39.2-169.5-118.3 105.5 -3.4 9.6 67.2 11 113 A D + 0 0 132 -2,-0.6 2,-0.2 -7,-0.1 -1,-0.1 0.351 33.8 138.9 -73.9 3.5 -6.7 11.0 66.2 12 114 A R - 0 0 138 -8,-0.1 -7,-2.2 -7,-0.0 2,-0.4 -0.271 28.5-174.3 -66.3 120.8 -6.5 10.3 62.4 13 115 A R E -A 4 0A 119 -9,-0.2 2,-0.3 -2,-0.2 -9,-0.3 -0.896 4.5-168.2-110.7 136.9 -9.6 9.0 60.8 14 116 A F E -A 3 0A 29 -11,-2.9 -11,-1.9 -2,-0.4 6,-0.0 -0.908 19.5-153.3-123.9 154.2 -9.5 7.9 57.1 15 117 A S S S+ 0 0 80 -2,-0.3 2,-0.3 -14,-0.2 -1,-0.1 0.843 80.3 64.9 -93.9 -43.1 -12.4 7.1 54.7 16 118 A D S > S- 0 0 73 1,-0.1 4,-0.8 -13,-0.1 3,-0.1 -0.658 74.6-142.7 -84.7 136.1 -10.6 4.7 52.4 17 119 A S H > S+ 0 0 62 -2,-0.3 4,-1.6 1,-0.2 3,-0.5 0.861 100.3 52.7 -63.3 -41.6 -9.4 1.4 53.9 18 120 A S H > S+ 0 0 85 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.808 103.9 59.1 -65.6 -30.0 -6.1 1.2 51.9 19 121 A N H > S+ 0 0 51 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.779 102.7 53.1 -70.1 -27.2 -5.3 4.8 53.1 20 122 A L H X S+ 0 0 30 -4,-0.8 4,-2.2 -3,-0.5 -2,-0.2 0.952 110.2 45.1 -71.7 -51.1 -5.4 3.6 56.7 21 123 A T H X S+ 0 0 85 -4,-1.6 4,-1.2 2,-0.2 -2,-0.2 0.872 112.8 53.3 -59.9 -35.1 -3.0 0.7 56.2 22 124 A R H < S+ 0 0 88 -4,-1.9 3,-0.5 1,-0.2 4,-0.2 0.940 111.3 45.5 -62.7 -47.8 -0.8 3.2 54.2 23 125 A H H >X S+ 0 0 19 -4,-2.0 3,-1.4 1,-0.2 4,-0.7 0.788 104.3 62.5 -65.3 -33.8 -0.9 5.6 57.2 24 126 A I H 3X S+ 0 0 43 -4,-2.2 4,-2.2 1,-0.3 3,-0.5 0.840 89.6 69.6 -63.0 -32.9 -0.2 2.7 59.7 25 127 A R H 3X S+ 0 0 46 -4,-1.2 4,-0.6 -3,-0.5 5,-0.3 0.666 91.0 62.8 -59.6 -17.5 3.2 2.1 58.0 26 128 A I H <4 S+ 0 0 117 -3,-1.4 -1,-0.2 -4,-0.2 3,-0.2 0.949 107.6 39.3 -72.2 -49.8 4.3 5.5 59.4 27 129 A H H < S+ 0 0 79 -4,-0.7 -2,-0.2 -3,-0.5 -1,-0.1 0.884 120.0 45.0 -67.0 -43.6 4.0 4.3 63.1 28 130 A T H < S- 0 0 90 -4,-2.2 -1,-0.2 2,-0.1 -2,-0.2 0.601 100.5-136.0 -77.4 -12.2 5.3 0.8 62.4 29 131 A G < + 0 0 47 -4,-0.6 -3,-0.2 -5,-0.3 -4,-0.1 0.608 46.1 161.0 66.8 10.6 8.2 2.3 60.3 30 132 A Q - 0 0 107 -5,-0.3 -1,-0.2 -6,-0.2 -2,-0.1 -0.403 22.4-174.2 -67.6 139.3 7.6 -0.5 57.7 31 133 A K + 0 0 120 -3,-0.1 12,-0.2 -2,-0.1 11,-0.1 -0.746 6.2 176.9-139.3 84.7 9.0 0.2 54.2 32 134 A P + 0 0 64 0, 0.0 2,-0.5 0, 0.0 11,-0.1 0.543 61.1 71.3 -64.0 -15.8 7.9 -2.7 51.8 33 135 A F E -B 42 0B 65 9,-1.7 9,-3.2 2,-0.0 2,-0.3 -0.931 59.5-172.0-117.2 130.8 9.6 -1.1 48.7 34 136 A Q E -B 41 0B 94 -2,-0.5 2,-0.6 7,-0.2 7,-0.2 -0.878 24.9-121.1-118.5 147.8 13.3 -0.9 47.9 35 137 A C > - 0 0 2 5,-2.3 4,-2.1 -2,-0.3 5,-0.1 -0.787 12.5-149.2 -89.7 122.3 15.1 0.9 45.1 36 138 A R T 4 S+ 0 0 237 -2,-0.6 -1,-0.1 1,-0.2 -2,-0.0 0.724 93.1 48.2 -61.2 -24.0 17.2 -1.4 43.0 37 139 A I T 4 S+ 0 0 95 3,-0.1 -1,-0.2 1,-0.1 15,-0.0 0.934 129.0 13.3 -85.3 -53.9 19.7 1.4 42.3 38 140 A C T 4 S- 0 0 59 2,-0.1 -2,-0.2 0, 0.0 -1,-0.1 0.534 93.1-128.1-102.2 -8.2 20.6 3.0 45.6 39 141 A M < + 0 0 103 -4,-2.1 2,-0.2 1,-0.2 -3,-0.1 0.647 54.7 151.5 70.0 18.7 19.0 0.2 47.8 40 142 A R - 0 0 154 -5,-0.1 -5,-2.3 -6,-0.1 2,-0.4 -0.511 40.5-127.4 -81.6 149.6 17.0 2.8 49.8 41 143 A N E -B 34 0B 73 -7,-0.2 2,-0.3 -2,-0.2 -7,-0.2 -0.799 22.8-171.3-102.8 139.1 13.7 1.8 51.4 42 144 A F E -B 33 0B 27 -9,-3.2 -9,-1.7 -2,-0.4 6,-0.1 -0.929 28.1-136.6-127.2 151.8 10.4 3.6 51.0 43 145 A S S S+ 0 0 39 -2,-0.3 2,-0.3 -12,-0.2 -1,-0.1 0.784 89.4 42.0 -74.9 -27.7 7.0 3.3 52.7 44 146 A R > - 0 0 54 -13,-0.1 4,-0.8 -11,-0.1 -1,-0.1 -0.901 66.2-140.6-128.1 151.8 5.1 3.6 49.4 45 147 A S H > S+ 0 0 62 -2,-0.3 4,-2.2 2,-0.2 5,-0.1 0.790 103.8 55.6 -75.3 -32.7 5.4 2.3 45.8 46 148 A D H > S+ 0 0 71 2,-0.2 4,-1.3 1,-0.2 -1,-0.2 0.797 108.7 47.6 -71.8 -28.9 4.3 5.6 44.2 47 149 A H H > S+ 0 0 84 2,-0.2 4,-1.4 1,-0.2 -1,-0.2 0.713 110.8 53.0 -81.1 -24.7 7.1 7.5 46.0 48 150 A L H X S+ 0 0 22 -4,-0.8 4,-2.3 2,-0.2 -2,-0.2 0.899 105.7 54.0 -75.0 -41.1 9.5 4.8 44.9 49 151 A T H X S+ 0 0 71 -4,-2.2 4,-0.6 1,-0.2 -2,-0.2 0.904 113.9 40.8 -58.9 -44.9 8.4 5.2 41.3 50 152 A T H < S+ 0 0 34 -4,-1.3 3,-0.4 1,-0.2 -1,-0.2 0.809 111.3 57.8 -74.8 -30.0 9.2 8.9 41.4 51 153 A H H >< S+ 0 0 30 -4,-1.4 3,-2.0 1,-0.2 4,-0.3 0.889 98.3 59.8 -65.4 -41.5 12.4 8.4 43.4 52 154 A I H >X S+ 0 0 56 -4,-2.3 4,-1.9 1,-0.3 3,-1.6 0.790 93.6 66.5 -57.9 -28.7 13.8 6.1 40.7 53 155 A R H 3X S+ 0 0 41 -4,-0.6 4,-1.4 -3,-0.4 -1,-0.3 0.617 87.3 67.9 -70.0 -12.7 13.6 9.0 38.3 54 156 A T H <4 S+ 0 0 100 -3,-2.0 -1,-0.3 -4,-0.2 -2,-0.2 0.625 108.5 38.7 -79.0 -14.6 16.2 10.9 40.3 55 157 A H H <4 S+ 0 0 78 -3,-1.6 -2,-0.2 -4,-0.3 -1,-0.1 0.820 124.2 36.2 -97.8 -47.4 18.6 8.2 39.1 56 158 A T H < S- 0 0 88 -4,-1.9 -3,-0.2 2,-0.1 -2,-0.2 0.636 96.4-132.7 -83.2 -17.8 17.4 7.7 35.5 57 159 A G < + 0 0 47 -4,-1.4 2,-0.4 1,-0.2 -3,-0.1 0.764 44.7 164.0 70.3 24.5 16.6 11.4 34.9 58 160 A E + 0 0 101 -5,-0.2 -1,-0.2 -6,-0.1 -2,-0.1 -0.654 14.2 179.8 -79.1 127.2 13.2 10.5 33.4 59 161 A K + 0 0 107 -2,-0.4 12,-0.2 1,-0.1 11,-0.1 -0.756 10.6 169.8-132.7 86.6 10.8 13.5 33.2 60 162 A P + 0 0 67 0, 0.0 2,-0.7 0, 0.0 11,-0.2 0.441 58.0 83.3 -75.2 -2.0 7.4 12.5 31.7 61 163 A F E -C 70 0C 59 9,-2.2 9,-2.3 11,-0.0 2,-0.3 -0.842 58.0-176.3-115.3 105.4 5.8 15.9 32.5 62 164 A A E -C 69 0C 43 -2,-0.7 2,-0.3 7,-0.3 7,-0.2 -0.731 28.9-115.3-101.9 141.6 6.3 18.9 30.2 63 165 A C > - 0 0 4 5,-2.4 4,-1.2 -2,-0.3 14,-0.1 -0.525 18.6-139.7 -71.4 131.8 5.1 22.4 30.7 64 166 A D T 4 S+ 0 0 154 -2,-0.3 -1,-0.1 1,-0.1 -2,-0.0 0.688 96.5 46.2 -66.1 -19.8 2.5 23.4 28.0 65 167 A I T 4 S+ 0 0 114 3,-0.1 -1,-0.1 1,-0.0 -3,-0.0 0.944 131.7 8.1 -89.2 -60.0 4.1 26.9 27.6 66 168 A C T 4 S- 0 0 74 2,-0.1 -2,-0.1 14,-0.0 -1,-0.0 0.613 93.5-122.3 -99.3 -16.8 7.9 26.5 27.4 67 169 A G < + 0 0 43 -4,-1.2 2,-0.2 1,-0.3 -3,-0.1 0.604 50.9 160.9 85.3 12.0 8.1 22.7 27.1 68 170 A R - 0 0 154 -6,-0.1 -5,-2.4 1,-0.1 2,-0.3 -0.500 31.7-134.5 -70.0 132.4 10.3 22.2 30.2 69 171 A K E -C 62 0C 126 -7,-0.2 2,-0.3 -2,-0.2 -7,-0.3 -0.674 20.7-171.9 -97.4 145.5 10.1 18.7 31.5 70 172 A F E -C 61 0C 24 -9,-2.3 -9,-2.2 -2,-0.3 6,-0.1 -0.933 29.0-132.2-131.6 151.7 9.7 17.4 35.1 71 173 A A S S+ 0 0 15 -2,-0.3 2,-0.3 -12,-0.2 -1,-0.1 0.866 92.2 39.9 -71.2 -35.9 9.9 14.1 36.8 72 174 A R S > S- 0 0 97 -11,-0.1 4,-1.2 1,-0.1 3,-0.4 -0.841 77.4-126.7-118.3 153.6 6.7 14.5 38.8 73 175 A S H > S+ 0 0 58 -2,-0.3 4,-2.0 1,-0.2 3,-0.4 0.907 108.3 54.9 -61.3 -44.3 3.3 16.0 37.9 74 176 A D H > S+ 0 0 74 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.752 103.0 55.9 -62.6 -28.7 3.3 18.4 40.9 75 177 A E H > S+ 0 0 55 -3,-0.4 4,-1.2 2,-0.2 -1,-0.2 0.865 109.9 46.2 -71.2 -36.3 6.6 19.9 39.9 76 178 A R H X S+ 0 0 72 -4,-1.2 4,-2.7 -3,-0.4 -2,-0.2 0.848 111.7 51.9 -71.9 -37.6 5.2 20.7 36.5 77 179 A K H X S+ 0 0 145 -4,-2.0 4,-0.9 1,-0.2 -2,-0.2 0.926 111.3 46.4 -64.7 -44.3 2.1 22.1 38.2 78 180 A R H < S+ 0 0 158 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.763 115.0 49.5 -69.7 -25.8 4.2 24.3 40.4 79 181 A H H >< S+ 0 0 19 -4,-1.2 3,-3.0 1,-0.2 4,-0.4 0.949 98.2 62.9 -77.2 -52.5 6.2 25.4 37.5 80 182 A T H >< S+ 0 0 48 -4,-2.7 3,-1.3 1,-0.3 -2,-0.2 0.775 91.5 68.9 -44.6 -32.7 3.5 26.4 35.0 81 183 A K G >< S+ 0 0 119 -4,-0.9 3,-1.1 1,-0.2 -1,-0.3 0.632 83.1 73.2 -65.6 -14.0 2.3 29.1 37.4 82 184 A I G < S+ 0 0 101 -3,-3.0 -1,-0.2 1,-0.2 -2,-0.2 0.837 83.0 67.8 -71.0 -29.4 5.5 31.1 36.7 83 185 A H G < 0 0 73 -3,-1.3 -1,-0.2 -4,-0.4 -2,-0.1 0.441 360.0 360.0 -71.0 1.7 4.3 32.1 33.2 84 186 A L < 0 0 194 -3,-1.1 -2,-0.2 -4,-0.1 -1,-0.1 0.929 360.0 360.0 -83.9 360.0 1.5 34.2 34.8