==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 10-DEC-97 1A1G . COMPND 2 MOLECULE: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.ELROD-ERICKSON,T.E.BENSON,C.O.PABO . 84 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6650.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 46 54.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 8 9.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 13.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 24 28.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 103 A R 0 0 170 0, 0.0 14,-0.1 0, 0.0 15,-0.1 0.000 360.0 360.0 360.0 175.9 -14.0 7.7 60.4 2 104 A P + 0 0 96 0, 0.0 2,-0.3 0, 0.0 13,-0.1 0.429 360.0 50.8 -85.1 -0.9 -14.8 3.9 60.9 3 105 A Y - 0 0 90 11,-0.3 11,-2.1 13,-0.1 2,-0.2 -0.992 67.6-169.8-137.8 141.7 -11.1 3.3 61.9 4 106 A A B -A 13 0A 31 -2,-0.3 9,-0.2 9,-0.3 7,-0.1 -0.716 32.1 -96.8-121.8 178.7 -8.8 5.0 64.4 5 107 A C - 0 0 13 7,-1.2 5,-0.1 -2,-0.2 8,-0.0 -0.865 25.3-157.7-103.2 112.1 -5.1 5.1 65.4 6 108 A P + 0 0 110 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 0.669 61.7 104.3 -61.2 -20.4 -4.4 2.8 68.4 7 109 A V > - 0 0 51 1,-0.2 3,-1.7 2,-0.1 -2,-0.1 -0.516 69.3-141.7 -68.1 119.5 -1.2 4.5 69.5 8 110 A E T 3 S+ 0 0 172 -2,-0.4 -1,-0.2 1,-0.3 -3,-0.0 0.814 99.3 54.2 -51.5 -37.1 -2.1 6.5 72.7 9 111 A S T 3 S+ 0 0 99 2,-0.0 2,-0.3 -3,-0.0 -1,-0.3 0.683 105.1 65.1 -73.2 -17.6 0.2 9.4 71.7 10 112 A C < - 0 0 19 -3,-1.7 -5,-0.1 -5,-0.1 0, 0.0 -0.822 55.7-175.3-110.0 148.8 -1.5 9.7 68.3 11 113 A D + 0 0 149 -2,-0.3 2,-0.2 -7,-0.1 -3,-0.1 -0.125 33.4 129.6-141.7 49.1 -5.2 10.7 67.5 12 114 A R - 0 0 135 2,-0.0 -7,-1.2 -7,-0.0 2,-0.4 -0.641 43.1-142.7-102.0 149.0 -6.0 10.4 63.7 13 115 A R B -A 4 0A 112 -2,-0.2 2,-0.4 -9,-0.2 -9,-0.3 -0.952 13.5-151.2-117.4 137.9 -8.9 8.6 62.2 14 116 A F - 0 0 29 -11,-2.1 -11,-0.3 -2,-0.4 6,-0.1 -0.946 17.8-136.4-124.7 129.6 -8.7 6.5 58.9 15 117 A S S S+ 0 0 65 -2,-0.4 2,-0.3 -14,-0.1 -1,-0.1 0.669 83.4 2.9 -40.4 -38.3 -11.3 5.7 56.2 16 118 A D S >> S- 0 0 66 -15,-0.1 4,-1.9 -13,-0.1 3,-1.5 -0.990 81.2 -87.5-155.0 167.4 -10.3 2.1 55.9 17 119 A S T 34 S+ 0 0 70 -2,-0.3 -2,-0.1 1,-0.3 0, 0.0 0.055 121.3 40.7 -66.4 22.5 -8.2 -0.8 57.0 18 120 A S T 3> S+ 0 0 70 -2,-1.3 4,-2.4 3,-0.1 -1,-0.3 0.365 109.3 54.4-139.7 -18.0 -5.3 0.0 54.7 19 121 A N H <> S+ 0 0 53 -3,-1.5 4,-1.5 2,-0.2 -2,-0.2 0.686 118.7 41.3 -82.0 -24.4 -5.2 3.8 55.0 20 122 A L H X S+ 0 0 24 -4,-1.9 4,-2.3 2,-0.2 -3,-0.2 0.827 115.8 48.0 -85.7 -40.8 -5.0 2.7 58.7 21 123 A T H > S+ 0 0 81 -5,-0.3 4,-0.6 2,-0.2 -2,-0.2 0.900 115.9 45.7 -65.6 -40.3 -2.5 -0.1 57.8 22 124 A R H >< S+ 0 0 93 -4,-2.4 3,-0.9 1,-0.2 4,-0.3 0.926 113.6 48.0 -66.0 -50.5 -0.5 2.4 55.7 23 125 A H H >X S+ 0 0 19 -4,-1.5 3,-2.3 1,-0.2 4,-0.6 0.863 101.0 64.2 -57.9 -43.2 -0.6 5.1 58.4 24 126 A I H >X S+ 0 0 48 -4,-2.3 4,-2.2 1,-0.3 3,-0.9 0.795 87.4 74.3 -53.2 -27.8 0.4 2.7 61.1 25 127 A R H - 0 0 0 5,-2.5 4,-2.1 -2,-0.3 5,-0.1 -0.801 13.8-155.7 -87.3 117.7 15.8 1.1 45.8 36 138 A R T 4 S+ 0 0 223 -2,-0.7 -1,-0.1 1,-0.2 -2,-0.0 0.728 89.7 56.4 -67.3 -16.3 18.1 -1.3 44.1 37 139 A I T 4 S+ 0 0 95 1,-0.1 -1,-0.2 3,-0.1 -2,-0.0 0.969 128.2 7.5 -82.6 -51.6 20.3 1.6 43.0 38 140 A C T 4 S- 0 0 61 2,-0.1 -2,-0.2 0, 0.0 -1,-0.1 0.403 93.2-125.3-111.4 -0.2 21.2 3.2 46.4 39 141 A M < + 0 0 101 -4,-2.1 2,-0.2 1,-0.2 -3,-0.1 0.554 56.4 150.7 67.4 12.4 19.6 0.6 48.7 40 142 A R - 0 0 161 -5,-0.1 -5,-2.5 -6,-0.1 2,-0.3 -0.500 39.7-132.2 -75.1 142.1 17.5 3.2 50.5 41 143 A N E -B 34 0B 69 -7,-0.2 2,-0.3 -2,-0.2 -7,-0.2 -0.728 18.8-162.5 -98.8 149.8 14.2 1.9 51.9 42 144 A F E -B 33 0B 26 -9,-2.2 -9,-1.9 -2,-0.3 3,-0.1 -0.919 25.3-140.1-130.4 151.4 10.8 3.6 51.6 43 145 A S S S+ 0 0 41 -2,-0.3 2,-0.4 -12,-0.2 -1,-0.1 0.759 89.5 47.2 -79.4 -22.4 7.5 3.2 53.3 44 146 A R > - 0 0 56 -11,-0.1 4,-1.2 1,-0.1 5,-0.1 -0.943 65.7-144.0-129.6 144.8 5.6 3.4 50.0 45 147 A S H > S+ 0 0 66 -2,-0.4 4,-1.7 1,-0.2 -1,-0.1 0.853 104.8 52.1 -68.3 -36.3 5.7 1.9 46.6 46 148 A D H > S+ 0 0 69 1,-0.2 4,-1.6 2,-0.2 -1,-0.2 0.868 108.9 49.7 -70.7 -32.9 4.7 5.0 44.9 47 149 A H H > S+ 0 0 88 1,-0.2 4,-1.3 2,-0.2 -1,-0.2 0.734 108.1 53.8 -78.5 -21.6 7.3 7.1 46.6 48 150 A L H X S+ 0 0 23 -4,-1.2 4,-2.3 2,-0.2 -1,-0.2 0.871 105.0 56.0 -75.2 -40.6 10.0 4.6 45.7 49 151 A T H X S+ 0 0 70 -4,-1.7 4,-0.7 1,-0.2 -2,-0.2 0.933 112.4 39.5 -56.5 -51.2 9.0 4.9 42.0 50 152 A T H >< S+ 0 0 32 -4,-1.6 3,-0.6 1,-0.2 4,-0.4 0.837 111.4 58.7 -70.7 -32.6 9.5 8.6 41.9 51 153 A H H >< S+ 0 0 30 -4,-1.3 3,-2.2 1,-0.2 4,-0.3 0.930 100.6 57.2 -59.9 -44.3 12.6 8.4 44.0 52 154 A I H >X S+ 0 0 48 -4,-2.3 4,-1.8 1,-0.3 3,-1.4 0.755 93.5 68.3 -58.0 -26.4 14.1 6.1 41.4 53 155 A R H - 0 0 5 5,-2.4 4,-1.6 -2,-0.3 -1,-0.1 -0.439 17.5-140.9 -66.2 133.7 5.0 21.9 31.0 64 166 A D T 4 S+ 0 0 154 -2,-0.2 -1,-0.1 2,-0.2 -2,-0.0 0.791 97.5 44.7 -67.0 -30.5 2.3 22.9 28.5 65 167 A I T 4 S+ 0 0 117 3,-0.1 -1,-0.2 1,-0.1 -2,-0.0 0.951 134.3 6.1 -80.8 -50.2 3.6 26.4 28.2 66 168 A C T 4 S- 0 0 72 2,-0.1 -2,-0.2 0, 0.0 -1,-0.1 0.517 89.7-121.4-113.4 -12.7 7.4 25.9 27.8 67 169 A G < + 0 0 39 -4,-1.6 -3,-0.1 1,-0.2 2,-0.0 0.421 50.9 158.8 86.5 -2.3 7.9 22.2 27.6 68 170 A R - 0 0 155 -6,-0.2 -5,-2.4 1,-0.1 2,-0.3 -0.327 36.4-128.5 -57.9 135.1 10.3 21.9 30.6 69 171 A K E -C 62 0C 133 -7,-0.2 2,-0.3 -6,-0.0 -7,-0.2 -0.640 24.5-171.9 -95.3 143.9 10.3 18.3 31.9 70 172 A F E -C 61 0C 26 -9,-1.7 -9,-2.5 -2,-0.3 6,-0.0 -0.964 29.2-137.3-134.4 149.7 9.7 17.1 35.4 71 173 A A S S+ 0 0 15 -2,-0.3 2,-0.3 -12,-0.2 -1,-0.1 0.805 92.5 38.9 -72.7 -29.3 9.9 13.8 37.3 72 174 A R S > S- 0 0 101 -11,-0.1 4,-1.6 1,-0.1 3,-0.3 -0.907 75.2-130.2-126.0 150.2 6.7 14.3 39.2 73 175 A S H > S+ 0 0 61 -2,-0.3 4,-2.4 1,-0.2 5,-0.1 0.841 109.1 55.7 -64.6 -34.6 3.3 15.8 38.2 74 176 A D H > S+ 0 0 77 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.813 103.5 54.1 -71.1 -29.1 3.3 18.1 41.3 75 177 A E H > S+ 0 0 53 -3,-0.3 4,-2.4 2,-0.2 -1,-0.2 0.929 110.3 47.4 -67.8 -43.8 6.7 19.6 40.3 76 178 A R H X S+ 0 0 73 -4,-1.6 4,-3.2 2,-0.2 -2,-0.2 0.940 111.5 50.7 -61.1 -44.5 5.2 20.4 36.9 77 179 A K H X S+ 0 0 163 -4,-2.4 4,-1.0 1,-0.2 -2,-0.2 0.920 110.5 49.2 -58.5 -44.5 2.1 21.9 38.6 78 180 A R H < S+ 0 0 175 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.878 115.7 45.8 -63.2 -36.6 4.3 24.0 40.9 79 181 A H H >< S+ 0 0 17 -4,-2.4 3,-2.7 1,-0.2 4,-0.3 0.930 98.5 65.8 -73.0 -49.1 6.3 25.1 37.9 80 182 A T H >< S+ 0 0 50 -4,-3.2 3,-2.0 1,-0.3 -1,-0.2 0.824 90.3 67.3 -45.7 -37.5 3.4 26.0 35.4 81 183 A K G >< S+ 0 0 127 -4,-1.0 3,-1.6 1,-0.3 -1,-0.3 0.689 83.1 74.8 -59.7 -22.0 2.2 28.9 37.6 82 184 A I G < S+ 0 0 100 -3,-2.7 -1,-0.3 1,-0.3 -2,-0.2 0.767 81.2 69.8 -65.4 -21.0 5.4 30.8 36.9 83 185 A H G < 0 0 77 -3,-2.0 -1,-0.3 -4,-0.3 -2,-0.2 0.461 360.0 360.0 -76.8 2.3 4.2 31.6 33.4 84 186 A L < 0 0 190 -3,-1.6 -1,-0.2 -4,-0.1 -2,-0.2 0.742 360.0 360.0 -91.1 360.0 1.5 33.9 35.0