==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 10-DEC-97 1A1H . COMPND 2 MOLECULE: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.ELROD-ERICKSON,T.E.BENSON,C.O.PABO . 85 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7050.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 46 54.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 10.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 24 28.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 103 A R 0 0 221 0, 0.0 14,-0.1 0, 0.0 13,-0.1 0.000 360.0 360.0 360.0 -32.6 -14.2 7.7 60.6 2 104 A P + 0 0 92 0, 0.0 2,-0.2 0, 0.0 13,-0.2 0.987 360.0 49.0 -56.9 -67.3 -14.7 3.9 60.5 3 105 A Y E S-A 14 0A 108 11,-1.6 11,-2.5 12,-0.1 2,-0.3 -0.517 75.3-172.8 -77.1 139.8 -11.1 2.7 60.8 4 106 A A E -A 13 0A 36 9,-0.3 9,-0.2 -2,-0.2 7,-0.0 -0.927 26.7-112.6-137.3 162.1 -8.9 4.1 63.7 5 107 A C - 0 0 13 7,-1.8 7,-0.2 -2,-0.3 16,-0.0 -0.822 17.2-159.9 -98.9 110.3 -5.3 4.2 65.1 6 108 A P + 0 0 110 0, 0.0 -1,-0.1 0, 0.0 5,-0.0 0.632 53.7 113.1 -59.4 -25.0 -4.8 2.5 68.6 7 109 A V S S- 0 0 60 1,-0.1 -2,-0.1 2,-0.0 3,-0.0 -0.229 72.5-120.5 -58.7 143.4 -1.6 4.3 69.6 8 110 A E S S+ 0 0 175 1,-0.2 -1,-0.1 3,-0.1 -3,-0.0 0.925 103.4 41.0 -45.4 -71.1 -1.7 6.7 72.6 9 111 A S S S+ 0 0 108 2,-0.0 -1,-0.2 0, 0.0 2,-0.1 0.812 98.9 85.0 -53.5 -41.0 -0.6 10.0 71.0 10 112 A C - 0 0 26 1,-0.1 0, 0.0 -3,-0.0 0, 0.0 -0.427 45.6-177.9 -75.2 144.1 -2.5 9.8 67.7 11 113 A D + 0 0 146 -2,-0.1 2,-0.2 2,-0.0 -1,-0.1 -0.230 42.2 131.0-126.5 38.0 -6.1 10.8 67.3 12 114 A R - 0 0 143 -7,-0.2 -7,-1.8 8,-0.0 2,-0.3 -0.602 33.8-171.1-101.6 158.4 -6.5 9.8 63.6 13 115 A R E -A 4 0A 143 -9,-0.2 2,-0.4 -2,-0.2 -9,-0.3 -0.989 7.4-153.0-143.4 147.6 -9.1 7.8 61.6 14 116 A F E -A 3 0A 43 -11,-2.5 -11,-1.6 -2,-0.3 6,-0.1 -0.971 15.6-149.7-128.0 139.5 -9.2 6.4 58.0 15 117 A S S S+ 0 0 92 -2,-0.4 2,-0.3 -13,-0.2 -1,-0.1 0.910 89.0 54.0 -70.8 -41.5 -12.1 5.6 55.6 16 118 A Q S > S- 0 0 133 1,-0.1 4,-1.1 -14,-0.1 3,-0.3 -0.739 79.7-136.0 -95.3 142.1 -10.2 2.9 53.8 17 119 A S H > S+ 0 0 53 -2,-0.3 4,-1.9 1,-0.2 3,-0.3 0.868 105.2 59.0 -60.2 -38.8 -8.6 -0.0 55.8 18 120 A G H > S+ 0 0 44 1,-0.2 4,-0.9 2,-0.2 -1,-0.2 0.850 102.8 50.7 -59.5 -38.6 -5.5 0.3 53.6 19 121 A S H > S+ 0 0 23 -3,-0.3 4,-1.8 2,-0.2 -1,-0.2 0.764 108.3 52.5 -71.7 -29.3 -4.9 4.0 54.7 20 122 A L H X S+ 0 0 21 -4,-1.1 4,-1.7 -3,-0.3 -2,-0.2 0.932 112.7 43.7 -69.7 -47.6 -5.2 3.1 58.4 21 123 A T H < S+ 0 0 73 -4,-1.9 4,-0.4 2,-0.2 -2,-0.2 0.648 112.1 54.4 -72.3 -17.2 -2.6 0.4 58.1 22 124 A R H >< S+ 0 0 98 -4,-0.9 3,-0.7 -5,-0.2 4,-0.2 0.865 109.6 47.4 -78.9 -44.0 -0.4 2.6 55.9 23 125 A H H >X S+ 0 0 13 -4,-1.8 3,-2.0 1,-0.2 4,-0.6 0.832 100.3 66.2 -64.1 -37.1 -0.4 5.3 58.5 24 126 A I H >X S+ 0 0 47 -4,-1.7 4,-2.0 1,-0.3 3,-0.7 0.772 87.6 70.9 -58.3 -24.6 0.4 2.7 61.2 25 127 A R H <> S+ 0 0 52 -3,-0.7 4,-1.8 -4,-0.4 5,-0.4 0.720 85.3 66.6 -65.4 -21.9 3.8 2.4 59.5 26 128 A I H <4 S+ 0 0 122 -3,-2.0 -1,-0.2 -4,-0.2 -2,-0.2 0.924 108.4 39.4 -63.1 -40.9 4.7 5.8 60.8 27 129 A H H << S+ 0 0 69 -3,-0.7 -2,-0.2 -4,-0.6 -1,-0.2 0.888 120.6 41.4 -76.1 -45.9 4.6 4.3 64.3 28 130 A T H < S- 0 0 94 -4,-2.0 -2,-0.2 2,-0.1 -1,-0.2 0.649 99.4-135.6 -77.8 -16.3 6.2 0.9 63.5 29 131 A G < + 0 0 48 -4,-1.8 2,-0.2 -5,-0.2 -3,-0.2 0.637 41.6 167.7 70.7 16.4 8.8 2.6 61.3 30 132 A Q - 0 0 100 -5,-0.4 -1,-0.2 -6,-0.1 -2,-0.1 -0.439 18.7-178.4 -69.4 130.1 8.3 -0.1 58.6 31 133 A K + 0 0 106 -2,-0.2 12,-0.2 1,-0.1 11,-0.2 -0.736 6.7 171.5-131.3 83.0 9.9 0.7 55.2 32 134 A P + 0 0 57 0, 0.0 2,-0.6 0, 0.0 11,-0.2 0.700 54.5 72.7 -63.7 -31.3 9.0 -2.3 52.9 33 135 A F E -B 42 0B 72 9,-1.7 9,-2.5 2,-0.0 2,-0.3 -0.821 63.4-165.3-103.5 119.6 10.2 -1.0 49.5 34 136 A Q E -B 41 0B 99 -2,-0.6 2,-0.7 7,-0.2 7,-0.2 -0.774 21.5-126.0-106.9 144.2 13.9 -0.7 48.7 35 137 A C > - 0 0 0 5,-2.3 4,-2.4 -2,-0.3 5,-0.1 -0.741 13.7-155.0 -84.3 112.7 15.8 1.2 46.0 36 138 A R T 4 S+ 0 0 223 -2,-0.7 -1,-0.1 1,-0.2 -2,-0.0 0.511 90.6 55.2 -67.9 -0.1 18.1 -1.3 44.2 37 139 A I T 4 S+ 0 0 96 3,-0.1 -1,-0.2 0, 0.0 -2,-0.0 0.865 127.9 8.0-100.4 -46.4 20.3 1.6 43.2 38 140 A C T 4 S- 0 0 63 2,-0.1 -2,-0.2 -3,-0.1 -4,-0.0 0.368 92.7-125.4-116.5 1.7 21.2 3.3 46.5 39 141 A M < + 0 0 108 -4,-2.4 -3,-0.1 1,-0.2 2,-0.1 0.407 56.7 149.4 69.2 1.2 19.7 0.8 48.9 40 142 A R - 0 0 153 -5,-0.1 -5,-2.3 -6,-0.1 2,-0.3 -0.419 40.1-134.9 -67.7 136.7 17.6 3.4 50.7 41 143 A N E -B 34 0B 70 -7,-0.2 2,-0.3 -2,-0.1 -7,-0.2 -0.724 18.8-162.8 -96.4 146.5 14.2 2.0 52.1 42 144 A F E -B 33 0B 26 -9,-2.5 -9,-1.7 -2,-0.3 6,-0.1 -0.923 25.9-135.5-129.1 152.9 10.9 3.8 51.7 43 145 A S S S+ 0 0 43 -2,-0.3 2,-0.4 -12,-0.2 -1,-0.1 0.750 89.4 43.1 -75.4 -26.7 7.5 3.5 53.4 44 146 A R > - 0 0 61 -11,-0.1 4,-1.8 1,-0.1 5,-0.2 -0.972 66.1-140.3-132.1 141.8 5.5 3.6 50.1 45 147 A S H > S+ 0 0 66 -2,-0.4 4,-1.8 1,-0.2 -1,-0.1 0.833 107.4 52.3 -60.1 -37.6 5.8 2.0 46.7 46 148 A D H > S+ 0 0 69 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.866 109.0 48.4 -70.7 -35.2 4.7 5.2 45.0 47 149 A H H > S+ 0 0 84 2,-0.2 4,-1.6 1,-0.2 -2,-0.2 0.799 109.3 54.1 -75.2 -27.2 7.3 7.3 46.8 48 150 A L H X S+ 0 0 24 -4,-1.8 4,-2.2 2,-0.2 -2,-0.2 0.900 105.2 54.9 -69.5 -41.1 10.0 4.7 45.9 49 151 A T H X S+ 0 0 75 -4,-1.8 4,-0.7 1,-0.2 -2,-0.2 0.954 111.5 41.7 -57.4 -53.5 9.0 5.1 42.2 50 152 A T H >< S+ 0 0 33 -4,-1.7 3,-0.7 1,-0.2 4,-0.3 0.845 110.7 58.5 -64.6 -33.8 9.5 8.9 42.1 51 153 A H H >< S+ 0 0 31 -4,-1.6 3,-2.3 1,-0.2 4,-0.5 0.921 97.6 60.5 -59.9 -44.9 12.7 8.6 44.2 52 154 A I H >X S+ 0 0 51 -4,-2.2 4,-1.8 1,-0.3 3,-1.1 0.774 92.7 67.0 -56.1 -25.9 14.2 6.3 41.5 53 155 A R H - 0 0 5 5,-2.6 4,-1.4 -2,-0.3 -1,-0.1 -0.440 17.2-141.6 -67.1 137.0 5.1 22.1 31.2 64 166 A D T 4 S+ 0 0 159 2,-0.2 -1,-0.1 1,-0.1 -2,-0.0 0.823 98.0 44.4 -68.3 -33.7 2.3 23.1 28.7 65 167 A I T 4 S+ 0 0 117 1,-0.1 -1,-0.1 3,-0.1 -2,-0.0 0.947 135.1 6.5 -78.3 -51.4 3.7 26.7 28.3 66 168 A C T 4 S- 0 0 71 2,-0.1 -2,-0.2 0, 0.0 -1,-0.1 0.540 89.1-122.4-113.9 -9.6 7.4 26.1 28.0 67 169 A G < + 0 0 36 -4,-1.4 -3,-0.1 1,-0.3 2,-0.0 0.435 51.6 157.8 83.2 -2.7 8.0 22.3 27.8 68 170 A R - 0 0 153 -6,-0.2 -5,-2.6 1,-0.1 2,-0.3 -0.342 35.7-130.3 -58.8 135.8 10.3 22.1 30.8 69 171 A K E -C 62 0C 121 -7,-0.2 2,-0.3 -6,-0.0 -7,-0.2 -0.688 23.2-172.2 -97.5 148.9 10.2 18.5 32.2 70 172 A F E -C 61 0C 26 -9,-1.8 -9,-2.5 -2,-0.3 3,-0.0 -0.950 30.0-137.3-137.2 148.5 9.7 17.2 35.7 71 173 A A S S+ 0 0 16 -2,-0.3 2,-0.3 -12,-0.2 -1,-0.1 0.822 94.0 45.0 -72.3 -28.5 10.0 13.9 37.5 72 174 A R S > S- 0 0 99 -11,-0.1 4,-1.8 1,-0.1 3,-0.4 -0.913 73.6-136.1-123.1 143.4 6.8 14.6 39.4 73 175 A S H > S+ 0 0 62 -2,-0.3 4,-2.6 1,-0.2 5,-0.1 0.861 107.3 53.9 -61.6 -36.9 3.4 16.0 38.4 74 176 A D H > S+ 0 0 78 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.787 104.8 54.7 -70.5 -27.5 3.3 18.3 41.5 75 177 A E H > S+ 0 0 53 -3,-0.4 4,-1.9 2,-0.2 -1,-0.2 0.920 110.4 46.1 -69.3 -43.9 6.6 19.8 40.6 76 178 A R H X S+ 0 0 74 -4,-1.8 4,-2.9 2,-0.2 -2,-0.2 0.928 112.3 50.8 -62.5 -44.2 5.2 20.6 37.2 77 179 A K H X S+ 0 0 160 -4,-2.6 4,-1.0 1,-0.2 -2,-0.2 0.935 109.3 50.2 -58.2 -46.6 2.1 22.0 38.9 78 180 A R H < S+ 0 0 182 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.864 115.4 46.6 -59.8 -33.1 4.2 24.1 41.2 79 181 A H H >< S+ 0 0 19 -4,-1.9 3,-2.4 1,-0.2 4,-0.3 0.910 96.8 65.6 -76.1 -49.4 6.1 25.3 38.0 80 182 A T H >< S+ 0 0 52 -4,-2.9 3,-1.8 1,-0.3 -1,-0.2 0.825 92.4 64.7 -47.1 -36.1 3.3 26.2 35.6 81 183 A K G >< S+ 0 0 135 -4,-1.0 3,-1.4 1,-0.3 -1,-0.3 0.679 84.0 74.4 -65.8 -17.7 2.1 29.0 37.7 82 184 A I G X S+ 0 0 104 -3,-2.4 3,-0.9 1,-0.3 -1,-0.3 0.735 83.7 68.8 -68.6 -17.9 5.3 31.0 37.3 83 185 A H G < S+ 0 0 78 -3,-1.8 -1,-0.3 -4,-0.3 -2,-0.2 0.412 81.9 77.7 -80.0 4.1 4.2 31.8 33.7 84 186 A L G < 0 0 140 -3,-1.4 -1,-0.2 -4,-0.1 -2,-0.1 0.582 360.0 360.0 -88.3 -11.1 1.4 34.1 35.0 85 187 A R < 0 0 270 -3,-0.9 -2,-0.1 -4,-0.1 -3,-0.1 0.861 360.0 360.0 71.4 360.0 3.5 37.1 35.9