==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-NOV-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 10-DEC-97 1A1I . COMPND 2 MOLECULE: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.ELROD-ERICKSON,T.E.BENSON,C.O.PABO . 85 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7071.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 55.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 10.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 27.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 103 A R 0 0 179 0, 0.0 14,-0.2 0, 0.0 13,-0.1 0.000 360.0 360.0 360.0 90.0 -14.0 7.8 62.5 2 104 A P + 0 0 88 0, 0.0 2,-0.8 0, 0.0 13,-0.2 0.657 360.0 79.0 -73.3 -18.6 -14.4 4.5 64.4 3 105 A Y E -A 14 0A 99 11,-2.3 11,-3.0 2,-0.0 2,-0.3 -0.782 59.3-174.8-106.5 102.8 -10.7 3.5 64.3 4 106 A A E -A 13 0A 44 -2,-0.8 9,-0.2 9,-0.2 7,-0.1 -0.631 33.5-109.8 -92.9 141.0 -8.4 5.3 66.8 5 107 A C - 0 0 10 7,-2.8 -1,-0.1 -2,-0.3 5,-0.1 -0.526 25.3-148.1 -66.8 126.4 -4.6 4.8 66.9 6 108 A P + 0 0 104 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.580 62.5 111.8 -75.4 -9.5 -3.9 2.8 70.0 7 109 A V S > S- 0 0 44 1,-0.1 3,-1.6 2,-0.1 -2,-0.1 -0.514 71.0-132.2 -69.5 124.6 -0.5 4.4 70.7 8 110 A E T 3 S+ 0 0 175 -2,-0.3 -1,-0.1 1,-0.3 -3,-0.0 0.823 101.5 45.4 -43.2 -51.3 -0.8 6.5 73.8 9 111 A S T 3 S+ 0 0 109 2,-0.0 2,-0.4 -3,-0.0 -1,-0.3 0.605 101.6 84.9 -75.0 -9.1 0.9 9.7 72.5 10 112 A C < - 0 0 19 -3,-1.6 0, 0.0 1,-0.1 0, 0.0 -0.792 47.4-179.2-103.1 134.3 -1.1 9.6 69.3 11 113 A D + 0 0 149 -2,-0.4 2,-0.1 -7,-0.1 -1,-0.1 0.158 36.3 133.2-114.7 21.1 -4.6 11.0 68.7 12 114 A R - 0 0 151 -8,-0.1 -7,-2.8 8,-0.0 2,-0.4 -0.460 33.9-166.9 -74.0 142.0 -5.2 10.1 65.0 13 115 A R E -A 4 0A 121 -9,-0.2 2,-0.3 -2,-0.1 -9,-0.2 -0.980 3.4-154.2-129.7 143.1 -8.5 8.5 64.1 14 116 A F E -A 3 0A 28 -11,-3.0 -11,-2.3 -2,-0.4 3,-0.1 -0.909 23.0-147.5-124.9 147.9 -9.4 6.8 60.8 15 117 A S S S+ 0 0 62 -2,-0.3 2,-0.4 -14,-0.2 -1,-0.1 0.820 94.6 41.7 -73.3 -35.6 -12.6 6.1 58.9 16 118 A R S >> S- 0 0 151 -13,-0.1 4,-1.1 1,-0.1 3,-0.8 -0.955 73.0-142.0-119.7 135.7 -11.1 2.8 57.6 17 119 A S H 3> S+ 0 0 60 -2,-0.4 4,-2.3 1,-0.2 5,-0.2 0.815 100.9 63.4 -63.8 -31.9 -9.1 0.2 59.6 18 120 A A H 3> S+ 0 0 70 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.847 101.8 51.9 -61.8 -31.6 -6.8 -0.5 56.6 19 121 A D H <> S+ 0 0 39 -3,-0.8 4,-2.3 2,-0.2 -1,-0.2 0.839 107.5 51.2 -73.6 -32.6 -5.6 3.2 56.8 20 122 A L H X S+ 0 0 27 -4,-1.1 4,-2.5 2,-0.2 -2,-0.2 0.883 106.7 55.5 -69.4 -37.2 -4.9 2.8 60.6 21 123 A T H < S+ 0 0 92 -4,-2.3 4,-0.4 2,-0.2 -2,-0.2 0.886 110.3 44.5 -61.4 -39.2 -2.9 -0.4 59.7 22 124 A R H >< S+ 0 0 103 -4,-1.5 3,-1.3 1,-0.2 4,-0.2 0.935 112.4 53.3 -69.3 -44.5 -0.8 1.7 57.3 23 125 A H H >< S+ 0 0 23 -4,-2.3 3,-2.3 1,-0.2 4,-0.4 0.858 95.3 67.2 -56.2 -42.9 -0.5 4.5 59.9 24 126 A I T >X S+ 0 0 46 -4,-2.5 4,-1.9 1,-0.3 3,-0.8 0.704 81.7 77.7 -55.9 -21.2 0.8 2.2 62.7 25 127 A R H <>>S+ 0 0 60 -3,-1.3 4,-1.4 -4,-0.4 5,-0.6 0.779 84.7 64.3 -59.5 -27.1 4.0 1.7 60.7 26 128 A I H <45S+ 0 0 121 -3,-2.3 -1,-0.2 -4,-0.2 -2,-0.2 0.912 109.3 37.3 -61.7 -43.3 5.0 5.2 61.9 27 129 A H H <45S+ 0 0 71 -3,-0.8 -2,-0.2 -4,-0.4 -1,-0.2 0.766 119.0 46.5 -80.9 -32.8 5.1 3.9 65.5 28 130 A T H <5S- 0 0 87 -4,-1.9 -2,-0.2 2,-0.1 -1,-0.2 0.629 101.3-131.6 -84.7 -15.3 6.5 0.4 64.8 29 131 A G T <5 + 0 0 53 -4,-1.4 2,-0.3 -5,-0.3 -3,-0.2 0.637 47.1 163.2 73.3 15.6 9.2 1.8 62.6 30 132 A Q < + 0 0 105 -5,-0.6 -1,-0.2 -6,-0.2 -2,-0.1 -0.525 16.7 172.1 -74.5 125.6 8.4 -0.8 59.9 31 133 A K + 0 0 119 -2,-0.3 12,-0.2 1,-0.1 11,-0.2 -0.716 2.3 173.7-133.3 80.7 9.7 0.1 56.4 32 134 A P + 0 0 60 0, 0.0 2,-0.6 0, 0.0 11,-0.2 0.497 54.3 78.6 -67.7 -10.3 9.0 -3.1 54.3 33 135 A F E -B 42 0B 62 9,-2.2 9,-2.2 2,-0.0 2,-0.3 -0.885 61.6-167.1-114.2 113.4 10.1 -1.7 50.9 34 136 A Q E -B 41 0B 107 -2,-0.6 2,-0.6 7,-0.2 7,-0.2 -0.714 21.5-129.3-101.9 142.2 13.7 -1.5 50.0 35 137 A C > - 0 0 0 5,-2.9 4,-2.1 -2,-0.3 5,-0.1 -0.757 13.8-154.8 -83.1 120.0 15.5 0.3 47.2 36 138 A R T 4 S+ 0 0 220 -2,-0.6 -1,-0.1 1,-0.2 -2,-0.0 0.653 89.4 56.6 -71.7 -12.8 17.8 -2.3 45.5 37 139 A I T 4 S+ 0 0 100 3,-0.1 -1,-0.2 1,-0.1 -2,-0.0 0.930 128.8 7.4 -84.2 -49.4 20.0 0.6 44.2 38 140 A C T 4 S- 0 0 55 2,-0.1 -2,-0.2 0, 0.0 -1,-0.1 0.456 93.8-125.6-112.3 -2.5 21.0 2.3 47.5 39 141 A M < + 0 0 118 -4,-2.1 -3,-0.1 1,-0.2 2,-0.1 0.470 56.2 149.6 70.8 6.8 19.4 -0.2 50.0 40 142 A R - 0 0 152 -6,-0.1 -5,-2.9 -5,-0.1 2,-0.3 -0.398 39.8-133.2 -69.2 148.0 17.3 2.5 51.8 41 143 A N E -B 34 0B 70 -7,-0.2 2,-0.3 -2,-0.1 -7,-0.2 -0.812 18.8-164.1-107.2 146.4 14.1 1.3 53.3 42 144 A F E -B 33 0B 27 -9,-2.2 -9,-2.2 -2,-0.3 6,-0.1 -0.942 26.5-133.7-130.7 151.0 10.6 2.9 52.9 43 145 A S S S+ 0 0 44 -2,-0.3 2,-0.3 -12,-0.2 -1,-0.1 0.768 90.5 38.8 -71.3 -27.7 7.3 2.7 54.7 44 146 A R > - 0 0 64 -11,-0.1 4,-1.3 1,-0.1 -1,-0.1 -0.950 66.6-137.7-132.0 149.7 5.3 2.5 51.5 45 147 A S H > S+ 0 0 69 -2,-0.3 4,-1.9 2,-0.2 -1,-0.1 0.846 105.4 57.1 -70.3 -33.3 5.6 1.0 48.0 46 148 A D H > S+ 0 0 73 1,-0.2 4,-1.6 2,-0.2 -1,-0.2 0.940 108.4 46.3 -64.6 -41.3 4.3 4.1 46.3 47 149 A H H > S+ 0 0 82 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.770 107.6 57.4 -71.8 -28.2 7.1 6.3 47.8 48 150 A L H X S+ 0 0 23 -4,-1.3 4,-2.3 2,-0.2 -1,-0.2 0.928 104.5 53.1 -66.7 -44.4 9.7 3.7 46.9 49 151 A T H X S+ 0 0 75 -4,-1.9 4,-1.0 1,-0.2 -2,-0.2 0.941 111.8 42.9 -56.9 -50.2 8.8 3.9 43.2 50 152 A T H < S+ 0 0 31 -4,-1.6 3,-0.5 1,-0.2 4,-0.4 0.875 111.7 55.7 -66.8 -33.1 9.1 7.7 43.1 51 153 A H H >< S+ 0 0 31 -4,-1.8 3,-1.9 1,-0.2 4,-0.4 0.893 100.0 59.8 -62.3 -41.7 12.4 7.5 45.1 52 154 A I H >X S+ 0 0 57 -4,-2.3 4,-1.7 1,-0.3 3,-1.5 0.817 93.4 66.0 -58.8 -28.5 13.8 5.1 42.5 53 155 A R H 3X S+ 0 0 45 -4,-1.0 4,-2.3 -3,-0.5 -1,-0.3 0.693 88.1 67.1 -66.8 -19.5 13.4 7.8 39.9 54 156 A T H <4 S+ 0 0 98 -3,-1.9 -1,-0.3 -4,-0.4 -2,-0.2 0.763 107.8 40.4 -70.8 -23.6 16.0 9.9 41.7 55 157 A H H <4 S+ 0 0 77 -3,-1.5 -2,-0.2 -4,-0.4 -1,-0.2 0.825 122.0 38.3 -89.1 -42.2 18.5 7.2 40.6 56 158 A T H < S- 0 0 93 -4,-1.7 -2,-0.2 2,-0.1 -3,-0.2 0.757 97.4-129.6 -83.6 -24.3 17.2 6.5 37.1 57 159 A G < + 0 0 49 -4,-2.3 2,-0.3 1,-0.3 -3,-0.1 0.593 47.5 162.2 83.5 10.5 16.4 10.1 36.2 58 160 A E + 0 0 103 -5,-0.3 -1,-0.3 -6,-0.1 -2,-0.1 -0.507 11.6 175.5 -67.7 123.9 13.0 9.1 35.0 59 161 A K + 0 0 113 -2,-0.3 12,-0.2 -3,-0.1 11,-0.1 -0.737 7.3 171.3-135.6 86.1 10.8 12.3 34.8 60 162 A P + 0 0 63 0, 0.0 2,-0.7 0, 0.0 11,-0.2 0.556 56.6 80.3 -72.1 -11.8 7.3 11.4 33.3 61 163 A F E -C 70 0C 57 9,-2.2 9,-1.8 11,-0.0 2,-0.4 -0.827 58.1-174.4-112.4 104.0 5.7 14.8 34.0 62 164 A A E -C 69 0C 40 -2,-0.7 7,-0.2 7,-0.2 6,-0.2 -0.747 30.3-111.7 -98.6 135.7 6.3 17.7 31.6 63 165 A C > - 0 0 5 5,-2.7 4,-1.7 -2,-0.4 -1,-0.1 -0.356 18.2-141.1 -63.1 131.4 5.1 21.2 32.1 64 166 A D T 4 S+ 0 0 158 2,-0.2 -1,-0.1 1,-0.2 -2,-0.0 0.762 98.5 44.1 -64.9 -26.2 2.5 22.2 29.5 65 167 A I T 4 S+ 0 0 114 3,-0.1 -1,-0.2 1,-0.1 -2,-0.0 0.937 133.4 7.7 -85.8 -51.2 4.0 25.7 29.2 66 168 A C T 4 S- 0 0 71 2,-0.1 -2,-0.2 0, 0.0 -1,-0.1 0.456 89.8-120.2-113.4 -6.7 7.7 25.2 29.0 67 169 A G < + 0 0 41 -4,-1.7 -3,-0.1 1,-0.2 2,-0.0 0.390 53.4 157.0 83.2 -3.8 8.3 21.4 28.8 68 170 A R - 0 0 156 -6,-0.2 -5,-2.7 1,-0.1 2,-0.3 -0.351 34.3-136.6 -59.4 132.1 10.3 21.1 32.0 69 171 A K E -C 62 0C 129 -7,-0.2 2,-0.3 -2,-0.0 -7,-0.2 -0.706 20.8-172.8 -98.4 147.5 10.1 17.5 33.3 70 172 A F E -C 61 0C 24 -9,-1.8 -9,-2.2 -2,-0.3 6,-0.0 -0.937 30.8-130.8-135.5 154.2 9.6 16.3 36.8 71 173 A A S S+ 0 0 13 -2,-0.3 2,-0.3 -12,-0.2 -1,-0.1 0.803 93.6 42.7 -72.4 -31.3 9.7 12.9 38.5 72 174 A R S > S- 0 0 103 -11,-0.1 4,-1.8 1,-0.1 3,-0.5 -0.912 74.3-132.1-122.2 149.5 6.4 13.4 40.3 73 175 A S H > S+ 0 0 59 -2,-0.3 4,-2.4 1,-0.2 5,-0.1 0.846 109.5 54.8 -63.4 -36.6 3.0 14.9 39.2 74 176 A D H > S+ 0 0 79 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.793 104.3 54.7 -69.4 -27.3 2.9 17.1 42.3 75 177 A E H > S+ 0 0 52 -3,-0.5 4,-1.7 2,-0.2 -2,-0.2 0.935 110.0 46.1 -68.3 -47.8 6.3 18.6 41.5 76 178 A R H X S+ 0 0 77 -4,-1.8 4,-2.8 1,-0.2 -2,-0.2 0.928 111.1 54.1 -59.5 -42.6 5.0 19.5 38.0 77 179 A K H X S+ 0 0 156 -4,-2.4 4,-0.9 1,-0.2 -1,-0.2 0.891 108.0 48.0 -58.4 -42.6 1.9 20.9 39.7 78 180 A R H < S+ 0 0 172 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.818 115.7 48.4 -68.1 -29.4 3.9 23.2 42.0 79 181 A H H >< S+ 0 0 19 -4,-1.7 3,-2.4 -3,-0.2 4,-0.3 0.903 97.0 64.5 -76.9 -48.5 5.9 24.3 39.0 80 182 A T H >< S+ 0 0 48 -4,-2.8 3,-1.9 1,-0.3 -1,-0.2 0.841 93.5 63.7 -47.5 -40.4 3.2 25.2 36.4 81 183 A K G >< S+ 0 0 126 -4,-0.9 3,-1.6 1,-0.3 -1,-0.3 0.655 84.1 74.7 -62.7 -15.1 1.8 28.0 38.5 82 184 A I G < S+ 0 0 109 -3,-2.4 -1,-0.3 1,-0.3 -2,-0.2 0.729 86.4 65.6 -71.3 -14.5 5.1 29.9 38.2 83 185 A H G < S+ 0 0 75 -3,-1.9 -1,-0.3 -4,-0.3 -2,-0.2 0.435 79.7 105.0 -83.5 -3.2 4.0 30.7 34.6 84 186 A L < 0 0 133 -3,-1.6 -3,-0.0 1,-0.2 0, 0.0 -0.344 360.0 360.0 -71.1 168.1 1.1 32.8 36.0 85 187 A R 0 0 285 -2,-0.1 -1,-0.2 0, 0.0 -2,-0.1 -0.138 360.0 360.0 -55.4 360.0 1.5 36.6 35.8