==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 10-DEC-97 1A1J . COMPND 2 MOLECULE: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.ELROD-ERICKSON,T.E.BENSON,C.O.PABO . 84 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6814.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 57.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 10.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 15.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 22 26.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 103 A R 0 0 173 0, 0.0 14,-0.2 0, 0.0 15,-0.1 0.000 360.0 360.0 360.0 88.7 -14.4 7.7 62.1 2 104 A P + 0 0 96 0, 0.0 2,-0.7 0, 0.0 13,-0.1 0.442 360.0 80.6 -90.0 -2.0 -14.9 4.6 64.2 3 105 A Y E +A 14 0A 100 11,-1.9 11,-3.0 2,-0.0 2,-0.2 -0.834 58.4 176.9-114.9 99.3 -11.2 3.5 64.1 4 106 A A E -A 13 0A 39 -2,-0.7 9,-0.2 9,-0.2 8,-0.1 -0.637 37.2-103.2 -99.7 154.9 -8.8 5.3 66.5 5 107 A C - 0 0 11 7,-1.8 -1,-0.1 -2,-0.2 5,-0.0 -0.616 23.1-151.6 -74.1 124.5 -5.1 4.7 67.0 6 108 A P + 0 0 109 0, 0.0 -1,-0.1 0, 0.0 2,-0.1 0.593 59.8 116.1 -76.0 -9.0 -4.6 2.8 70.2 7 109 A V S > S- 0 0 45 1,-0.1 3,-0.5 2,-0.1 -2,-0.1 -0.372 70.2-130.1 -63.7 135.2 -1.2 4.3 70.8 8 110 A E T 3 S+ 0 0 198 1,-0.2 -1,-0.1 -2,-0.1 -3,-0.0 0.900 103.1 42.0 -51.5 -53.4 -1.1 6.4 74.0 9 111 A S T 3 S+ 0 0 102 2,-0.0 2,-0.4 0, 0.0 -1,-0.2 0.678 102.1 86.4 -72.6 -17.5 0.5 9.6 72.5 10 112 A C < + 0 0 21 -3,-0.5 -5,-0.0 1,-0.1 -6,-0.0 -0.731 41.9 174.9 -97.5 133.6 -1.6 9.5 69.3 11 113 A D + 0 0 143 -2,-0.4 -1,-0.1 -7,-0.1 -3,-0.0 0.380 37.6 131.0-111.3 3.3 -5.1 10.9 68.9 12 114 A R - 0 0 156 -8,-0.1 -7,-1.8 1,-0.0 2,-0.3 -0.089 37.2-161.4 -56.7 153.4 -5.6 10.3 65.2 13 115 A R E -A 4 0A 119 -9,-0.2 2,-0.3 -11,-0.0 -9,-0.2 -0.991 0.8-154.5-139.8 148.5 -8.8 8.7 63.9 14 116 A F E -A 3 0A 31 -11,-3.0 -11,-1.9 -2,-0.3 3,-0.1 -0.937 20.6-148.8-132.1 150.6 -9.7 6.9 60.7 15 117 A S S S+ 0 0 55 -2,-0.3 2,-0.4 -14,-0.2 -1,-0.1 0.902 92.2 40.5 -75.1 -49.6 -12.7 6.1 58.5 16 118 A R S >> S- 0 0 161 1,-0.1 3,-1.3 -13,-0.1 4,-0.7 -0.900 76.6-137.7-107.9 133.3 -11.5 2.8 57.1 17 119 A S H >> S+ 0 0 62 -2,-0.4 4,-1.9 1,-0.3 3,-0.8 0.821 102.9 64.3 -57.1 -33.8 -9.6 0.3 59.3 18 120 A A H 3> S+ 0 0 69 1,-0.3 4,-1.3 2,-0.2 -1,-0.3 0.807 97.8 56.7 -61.8 -28.8 -7.1 -0.4 56.5 19 121 A D H <> S+ 0 0 34 -3,-1.3 4,-1.9 2,-0.2 -1,-0.3 0.769 105.4 49.7 -73.4 -27.7 -6.0 3.3 56.8 20 122 A L H < S+ 0 0 98 -4,-1.3 3,-1.4 -5,-0.2 -1,-0.2 0.910 113.8 50.9 -74.7 -45.9 -1.1 1.8 57.4 23 125 A H H >< S+ 0 0 19 -4,-1.9 3,-2.7 1,-0.3 4,-0.4 0.894 97.2 67.7 -57.1 -44.1 -0.9 4.6 59.9 24 126 A I T >X S+ 0 0 45 -4,-3.2 4,-1.8 1,-0.3 3,-0.8 0.664 83.8 74.6 -53.6 -19.3 0.3 2.3 62.7 25 127 A R H <> S+ 0 0 59 -3,-1.4 4,-1.4 -4,-0.3 5,-0.3 0.680 83.5 67.4 -68.7 -19.1 3.6 1.8 60.7 26 128 A I H <4 S+ 0 0 122 -3,-2.7 -1,-0.2 -4,-0.2 -2,-0.2 0.884 109.5 35.7 -66.8 -36.9 4.5 5.3 61.9 27 129 A H H <4 S+ 0 0 70 -3,-0.8 -2,-0.2 -4,-0.4 -1,-0.2 0.804 119.8 44.6 -87.9 -35.0 4.7 4.0 65.5 28 130 A T H < S- 0 0 88 -4,-1.8 -3,-0.2 2,-0.1 -2,-0.2 0.707 99.7-135.3 -81.9 -21.0 6.1 0.5 64.9 29 131 A G < + 0 0 52 -4,-1.4 2,-0.3 -5,-0.2 -3,-0.1 0.676 42.6 163.6 75.5 19.1 8.6 1.8 62.5 30 132 A Q - 0 0 98 -5,-0.3 -1,-0.2 -6,-0.1 -2,-0.1 -0.562 17.9-178.6 -75.0 128.0 8.1 -0.9 59.9 31 133 A K + 0 0 113 -2,-0.3 11,-0.2 1,-0.1 12,-0.2 -0.745 3.8 175.6-129.8 84.8 9.4 -0.1 56.4 32 134 A P + 0 0 60 0, 0.0 2,-0.5 0, 0.0 11,-0.2 0.486 55.4 76.4 -65.8 -13.6 8.5 -3.1 54.1 33 135 A F E -B 42 0B 68 9,-2.0 9,-2.8 2,-0.0 2,-0.4 -0.921 62.6-164.6-113.4 126.8 9.7 -1.8 50.8 34 136 A Q E -B 41 0B 98 -2,-0.5 2,-0.6 7,-0.2 7,-0.2 -0.848 21.0-127.2-115.7 144.5 13.4 -1.7 49.9 35 137 A C > - 0 0 0 5,-2.3 4,-1.7 -2,-0.4 14,-0.0 -0.743 13.4-157.3 -86.8 117.1 15.4 0.1 47.2 36 138 A R T 4 S+ 0 0 222 -2,-0.6 -1,-0.2 2,-0.2 -2,-0.0 0.812 90.0 52.3 -63.0 -27.8 17.5 -2.4 45.3 37 139 A I T 4 S+ 0 0 94 1,-0.1 -1,-0.2 3,-0.1 -2,-0.0 0.970 128.7 10.7 -77.0 -56.6 19.8 0.3 44.3 38 140 A C T 4 S- 0 0 59 2,-0.1 -2,-0.2 0, 0.0 -1,-0.1 0.306 92.6-126.6-109.5 7.4 20.8 2.1 47.5 39 141 A M < + 0 0 99 -4,-1.7 2,-0.2 1,-0.2 -3,-0.1 0.492 56.8 149.2 61.5 5.1 19.3 -0.5 50.0 40 142 A R - 0 0 147 -6,-0.1 -5,-2.3 1,-0.1 2,-0.3 -0.474 40.7-131.9 -71.0 140.5 17.3 2.2 51.8 41 143 A N E -B 34 0B 72 -7,-0.2 2,-0.3 -2,-0.2 -7,-0.2 -0.674 20.2-165.7 -95.7 149.4 13.9 1.1 53.3 42 144 A F E -B 33 0B 27 -9,-2.8 -9,-2.0 -2,-0.3 6,-0.1 -0.963 26.7-137.1-134.9 149.4 10.6 2.9 52.9 43 145 A S S S+ 0 0 48 -2,-0.3 2,-0.4 -12,-0.2 -1,-0.1 0.791 90.2 43.9 -74.6 -25.7 7.2 2.7 54.6 44 146 A R > - 0 0 73 -11,-0.1 4,-1.4 1,-0.1 3,-0.2 -0.963 65.0-144.1-131.8 138.0 5.2 2.9 51.3 45 147 A S H > S+ 0 0 62 -2,-0.4 4,-2.1 1,-0.2 -1,-0.1 0.783 104.9 55.0 -62.9 -30.8 5.5 1.3 47.9 46 148 A D H > S+ 0 0 67 2,-0.2 4,-1.6 1,-0.2 -1,-0.2 0.896 109.8 46.1 -71.3 -36.7 4.4 4.4 46.1 47 149 A H H > S+ 0 0 80 2,-0.2 4,-1.5 1,-0.2 -2,-0.2 0.736 109.9 55.1 -76.1 -23.1 7.1 6.4 47.8 48 150 A L H X S+ 0 0 24 -4,-1.4 4,-2.1 2,-0.2 -2,-0.2 0.917 105.0 54.0 -72.5 -42.4 9.6 3.7 46.9 49 151 A T H < S+ 0 0 72 -4,-2.1 4,-0.4 1,-0.2 -2,-0.2 0.898 112.7 42.0 -57.4 -44.6 8.5 4.0 43.3 50 152 A T H >< S+ 0 0 30 -4,-1.6 3,-0.6 1,-0.2 4,-0.4 0.807 109.0 58.5 -76.8 -27.5 9.3 7.8 43.3 51 153 A H H >< S+ 0 0 35 -4,-1.5 3,-2.0 1,-0.2 4,-0.3 0.914 99.8 57.9 -66.0 -42.4 12.5 7.5 45.2 52 154 A I T >X S+ 0 0 52 -4,-2.1 4,-2.0 1,-0.3 3,-1.1 0.703 94.2 67.3 -60.8 -20.3 14.0 5.2 42.6 53 155 A R H <> S+ 0 0 45 -3,-0.6 4,-2.0 -4,-0.4 -1,-0.3 0.707 87.8 66.0 -73.9 -18.8 13.4 7.9 40.0 54 156 A T H <4 S+ 0 0 100 -3,-2.0 -1,-0.3 -4,-0.4 -2,-0.2 0.644 109.2 40.0 -73.7 -14.5 16.1 9.9 41.9 55 157 A H H <4 S+ 0 0 77 -3,-1.1 -2,-0.2 -4,-0.3 -1,-0.2 0.824 121.3 38.9 -96.7 -46.6 18.5 7.2 40.7 56 158 A T H < S- 0 0 88 -4,-2.0 -2,-0.2 2,-0.1 -3,-0.2 0.686 94.2-133.7 -80.4 -21.1 17.2 6.6 37.1 57 159 A G < + 0 0 48 -4,-2.0 2,-0.3 1,-0.3 -3,-0.1 0.628 47.4 159.8 75.2 11.1 16.4 10.2 36.2 58 160 A E + 0 0 97 -5,-0.2 -1,-0.3 -6,-0.2 -2,-0.1 -0.531 15.1 178.1 -69.5 130.1 13.1 9.1 34.9 59 161 A K + 0 0 113 -2,-0.3 12,-0.3 -3,-0.1 11,-0.1 -0.783 10.7 173.4-139.9 92.8 10.7 12.0 34.7 60 162 A P + 0 0 62 0, 0.0 2,-0.7 0, 0.0 11,-0.2 0.561 59.3 80.8 -76.1 -10.3 7.3 11.1 33.2 61 163 A F E -C 70 0C 54 9,-2.3 9,-1.7 11,-0.0 2,-0.4 -0.816 56.9-176.4-112.8 104.7 5.7 14.5 33.9 62 164 A A E -C 69 0C 36 -2,-0.7 7,-0.2 7,-0.2 6,-0.1 -0.735 32.2-108.1 -99.8 137.7 6.3 17.5 31.5 63 165 A C > - 0 0 5 5,-2.4 4,-1.4 -2,-0.4 -1,-0.1 -0.371 19.5-138.0 -61.9 131.8 5.0 21.0 32.0 64 166 A D T 4 S+ 0 0 152 1,-0.2 -1,-0.1 2,-0.2 -2,-0.0 0.695 99.6 41.3 -63.0 -24.8 2.2 22.0 29.6 65 167 A I T 4 S+ 0 0 118 3,-0.1 -1,-0.2 0, 0.0 -2,-0.0 0.909 135.7 6.5 -90.2 -54.2 3.7 25.4 29.1 66 168 A C T 4 S- 0 0 75 2,-0.1 -2,-0.2 0, 0.0 -4,-0.0 0.590 89.6-124.1-107.7 -17.3 7.5 24.9 28.8 67 169 A G < + 0 0 38 -4,-1.4 2,-0.2 1,-0.3 -3,-0.1 0.569 48.2 160.3 86.1 7.9 7.9 21.2 28.8 68 170 A R - 0 0 160 -6,-0.1 -5,-2.4 1,-0.1 -1,-0.3 -0.476 36.5-127.0 -65.7 133.6 10.3 20.9 31.7 69 171 A K E -C 62 0C 133 -7,-0.2 2,-0.3 -2,-0.2 -7,-0.2 -0.600 24.7-170.0 -90.5 149.2 10.1 17.3 33.1 70 172 A F E -C 61 0C 28 -9,-1.7 -9,-2.3 -2,-0.2 3,-0.0 -0.952 28.3-135.8-137.2 148.8 9.5 16.1 36.6 71 173 A A S S+ 0 0 13 -2,-0.3 2,-0.3 -12,-0.3 -1,-0.1 0.813 94.2 35.5 -70.9 -33.8 9.7 12.7 38.5 72 174 A R S >> S- 0 0 96 -11,-0.1 4,-1.5 1,-0.1 3,-0.8 -0.934 77.6-127.6-124.8 150.0 6.4 13.2 40.3 73 175 A S H 3> S+ 0 0 62 -2,-0.3 4,-2.0 1,-0.2 -1,-0.1 0.809 108.6 59.1 -63.4 -29.9 3.2 14.8 39.1 74 176 A D H 3> S+ 0 0 76 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.750 102.3 52.3 -72.5 -26.4 3.1 17.1 42.3 75 177 A E H <> S+ 0 0 50 -3,-0.8 4,-1.7 2,-0.2 -1,-0.2 0.904 109.9 48.8 -74.5 -41.1 6.5 18.6 41.4 76 178 A R H X S+ 0 0 71 -4,-1.5 4,-2.9 1,-0.2 -2,-0.2 0.902 110.8 51.9 -62.3 -39.0 5.2 19.4 37.9 77 179 A K H X S+ 0 0 159 -4,-2.0 4,-1.0 1,-0.2 -1,-0.2 0.925 108.9 48.7 -62.3 -44.4 2.1 20.9 39.6 78 180 A R H < S+ 0 0 180 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.774 115.8 47.4 -65.1 -27.7 4.3 23.1 41.9 79 181 A H H >< S+ 0 0 18 -4,-1.7 3,-2.5 1,-0.1 4,-0.3 0.900 98.4 63.3 -80.6 -48.4 6.2 24.2 38.8 80 182 A T H >< S+ 0 0 48 -4,-2.9 3,-1.9 1,-0.3 -2,-0.2 0.833 92.4 67.9 -49.1 -35.1 3.4 25.0 36.4 81 183 A K G >< S+ 0 0 135 -4,-1.0 3,-1.2 1,-0.3 -1,-0.3 0.640 83.3 72.6 -62.4 -16.5 2.2 27.8 38.7 82 184 A I G < S+ 0 0 114 -3,-2.5 -1,-0.3 1,-0.2 -2,-0.2 0.638 83.9 68.3 -75.1 -11.8 5.4 29.8 38.0 83 185 A H G < 0 0 75 -3,-1.9 -1,-0.2 -4,-0.3 -2,-0.2 0.505 360.0 360.0 -83.1 -4.1 4.1 30.7 34.5 84 186 A L < 0 0 194 -3,-1.2 -2,-0.2 -4,-0.1 -1,-0.2 0.897 360.0 360.0 -85.3 360.0 1.4 32.8 36.0