==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 10-DEC-97 1A1K . COMPND 2 MOLECULE: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*AP*CP*C)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.ELROD-ERICKSON,T.E.BENSON,C.O.PABO . 85 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6946.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 56.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 10.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 25 29.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 103 A R 0 0 161 0, 0.0 14,-0.2 0, 0.0 13,-0.2 0.000 360.0 360.0 360.0 -15.3 -14.3 8.8 61.2 2 104 A P + 0 0 100 0, 0.0 2,-1.1 0, 0.0 13,-0.2 0.709 360.0 87.9 -65.0 -21.6 -15.0 5.6 63.3 3 105 A Y E -A 14 0A 99 11,-1.7 11,-2.9 2,-0.0 2,-0.2 -0.679 58.2-179.6 -88.5 95.3 -11.4 4.3 62.9 4 106 A A E -A 13 0A 36 -2,-1.1 9,-0.2 9,-0.2 8,-0.1 -0.630 36.7-104.0 -91.5 149.5 -9.2 5.7 65.7 5 107 A C - 0 0 9 7,-2.0 5,-0.1 -2,-0.2 -1,-0.1 -0.634 24.6-148.9 -74.8 123.9 -5.5 5.0 65.9 6 108 A P + 0 0 103 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.733 66.5 107.6 -64.8 -29.7 -4.9 2.4 68.7 7 109 A V S S- 0 0 44 1,-0.1 3,-0.4 2,-0.1 -2,-0.1 -0.321 71.4-139.4 -49.1 129.1 -1.4 3.7 69.6 8 110 A E S S+ 0 0 182 1,-0.2 -1,-0.1 3,-0.0 -3,-0.1 0.993 97.2 50.8 -63.7 -55.5 -2.2 5.4 72.9 9 111 A S S S+ 0 0 112 2,-0.1 2,-0.5 1,-0.0 -1,-0.2 0.673 104.3 76.4 -54.1 -17.3 0.0 8.5 72.5 10 112 A C + 0 0 19 -3,-0.4 -1,-0.0 1,-0.1 -5,-0.0 -0.863 49.6 174.0-104.4 131.0 -1.7 9.0 69.1 11 113 A D + 0 0 137 -2,-0.5 -1,-0.1 -7,-0.1 -2,-0.1 0.304 31.4 134.7-113.4 5.6 -5.2 10.3 68.7 12 114 A R - 0 0 151 -8,-0.1 -7,-2.0 1,-0.1 2,-0.3 -0.320 40.2-151.7 -60.9 137.4 -5.6 10.7 64.9 13 115 A R E -A 4 0A 114 -9,-0.2 2,-0.4 -2,-0.0 -9,-0.2 -0.829 6.9-158.1-113.8 153.2 -8.8 9.4 63.5 14 116 A F E -A 3 0A 30 -11,-2.9 -11,-1.7 -2,-0.3 6,-0.1 -0.986 20.0-152.9-135.6 140.6 -9.7 8.0 60.0 15 117 A S S S+ 0 0 76 -2,-0.4 2,-0.5 -14,-0.2 -1,-0.1 0.729 88.8 55.1 -79.0 -22.9 -12.8 7.6 58.0 16 118 A R S >> S- 0 0 159 -13,-0.1 4,-0.8 1,-0.1 3,-0.8 -0.957 73.2-145.2-117.9 126.1 -11.5 4.5 56.1 17 119 A S H >> S+ 0 0 62 -2,-0.5 4,-1.4 1,-0.3 3,-0.5 0.833 103.9 53.3 -54.7 -36.8 -10.1 1.4 57.9 18 120 A A H 3> S+ 0 0 50 1,-0.2 4,-1.7 2,-0.2 -1,-0.3 0.800 99.8 60.4 -71.0 -29.8 -7.5 1.0 55.2 19 121 A D H <> S+ 0 0 61 -3,-0.8 4,-1.3 1,-0.2 -1,-0.2 0.731 104.7 51.7 -70.2 -16.8 -6.3 4.6 55.6 20 122 A L H < S+ 0 0 121 -4,-1.7 3,-1.3 1,-0.2 4,-0.3 0.927 113.6 53.3 -67.3 -46.0 -1.3 2.7 55.9 23 125 A H H >X S+ 0 0 14 -4,-1.3 3,-1.9 1,-0.3 4,-0.7 0.810 96.2 66.9 -57.8 -35.1 -1.1 5.2 58.9 24 126 A I H >X S+ 0 0 55 -4,-2.5 4,-2.0 1,-0.3 3,-0.7 0.795 88.1 68.6 -59.3 -29.7 -0.0 2.4 61.2 25 127 A R H - 0 0 0 5,-2.5 4,-2.3 -2,-0.4 5,-0.1 -0.723 13.6-154.1 -79.6 116.9 15.3 0.9 45.9 36 138 A R T 4 S+ 0 0 216 -2,-0.6 -1,-0.2 1,-0.2 -2,-0.0 0.700 90.2 58.5 -67.9 -15.1 17.6 -1.6 44.2 37 139 A I T 4 S+ 0 0 98 1,-0.1 -1,-0.2 3,-0.1 -2,-0.0 0.961 129.1 4.6 -79.4 -52.7 19.8 1.3 43.1 38 140 A C T 4 S- 0 0 58 2,-0.1 -2,-0.2 0, 0.0 -1,-0.1 0.374 92.2-124.7-114.0 2.1 20.8 2.8 46.5 39 141 A M < + 0 0 98 -4,-2.3 -3,-0.1 1,-0.2 0, 0.0 0.485 55.0 153.6 68.2 5.3 19.1 0.3 48.8 40 142 A R - 0 0 162 -5,-0.1 -5,-2.5 -6,-0.1 2,-0.4 -0.341 39.4-130.1 -65.1 145.4 17.1 3.0 50.6 41 143 A N E -B 34 0B 75 -7,-0.2 2,-0.3 -9,-0.0 -7,-0.2 -0.806 22.0-165.5-101.4 145.0 13.9 1.7 52.2 42 144 A F E -B 33 0B 28 -9,-2.7 -9,-1.7 -2,-0.4 6,-0.1 -0.946 26.1-139.7-130.9 149.7 10.5 3.3 51.7 43 145 A S S S+ 0 0 46 -2,-0.3 2,-0.4 -12,-0.2 -1,-0.1 0.642 90.0 44.4 -78.9 -18.1 7.2 3.1 53.4 44 146 A R > - 0 0 62 -11,-0.1 4,-1.4 1,-0.1 5,-0.1 -0.992 67.0-142.7-135.4 139.7 5.2 3.2 50.1 45 147 A S H > S+ 0 0 64 -2,-0.4 4,-2.0 1,-0.2 -1,-0.1 0.865 105.9 53.1 -64.3 -37.7 5.7 1.5 46.7 46 148 A D H > S+ 0 0 66 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.871 107.3 51.1 -67.5 -35.4 4.5 4.7 44.9 47 149 A H H > S+ 0 0 82 1,-0.2 4,-1.3 2,-0.2 -1,-0.2 0.793 109.0 52.2 -71.7 -26.8 7.1 6.8 46.8 48 150 A L H X S+ 0 0 21 -4,-1.4 4,-2.3 2,-0.2 -2,-0.2 0.893 105.1 55.9 -74.2 -40.0 9.7 4.3 45.7 49 151 A T H X S+ 0 0 73 -4,-2.0 4,-0.8 1,-0.2 -2,-0.2 0.951 111.2 41.7 -56.7 -50.8 8.7 4.6 42.1 50 152 A T H < S+ 0 0 30 -4,-1.8 -1,-0.2 1,-0.2 3,-0.2 0.801 111.7 57.4 -68.4 -27.7 9.2 8.4 42.0 51 153 A H H >< S+ 0 0 28 -4,-1.3 3,-2.2 1,-0.2 4,-0.3 0.900 98.7 59.0 -67.3 -43.4 12.4 8.0 44.0 52 154 A I H >X S+ 0 0 49 -4,-2.3 4,-1.9 1,-0.3 3,-1.6 0.789 94.3 66.3 -56.9 -27.9 13.9 5.7 41.4 53 155 A R H 3X S+ 0 0 40 -4,-0.8 4,-1.5 1,-0.3 -1,-0.3 0.640 87.6 67.4 -69.1 -15.5 13.5 8.5 38.9 54 156 A T H <4 S+ 0 0 98 -3,-2.2 -1,-0.3 -4,-0.2 -2,-0.2 0.674 108.8 39.1 -76.3 -15.6 16.0 10.5 40.8 55 157 A H H <4 S+ 0 0 78 -3,-1.6 -2,-0.2 -4,-0.3 -1,-0.1 0.836 122.6 37.2 -96.8 -46.8 18.5 7.8 39.6 56 158 A T H < S- 0 0 92 -4,-1.9 -3,-0.2 2,-0.1 -2,-0.2 0.727 97.2-129.9 -79.9 -24.9 17.4 7.2 36.0 57 159 A G < + 0 0 44 -4,-1.5 2,-0.3 1,-0.3 -3,-0.1 0.613 47.1 163.0 83.3 11.7 16.5 10.8 35.2 58 160 A E + 0 0 102 -6,-0.2 -1,-0.3 -5,-0.1 -2,-0.1 -0.517 11.7 175.9 -68.4 124.9 13.0 9.7 33.9 59 161 A K + 0 0 111 -2,-0.3 12,-0.3 -3,-0.1 11,-0.2 -0.750 7.5 170.9-132.9 85.6 10.8 12.7 33.8 60 162 A P + 0 0 63 0, 0.0 2,-0.7 0, 0.0 11,-0.2 0.550 55.5 83.7 -76.8 -2.7 7.4 11.8 32.3 61 163 A F E -C 70 0C 52 9,-2.3 9,-1.6 11,-0.0 2,-0.4 -0.850 58.4-171.1-111.8 108.7 5.7 15.0 33.0 62 164 A A E -C 69 0C 39 -2,-0.7 7,-0.2 7,-0.2 2,-0.2 -0.770 27.3-116.2 -98.9 134.7 6.1 17.9 30.6 63 165 A C > - 0 0 3 5,-2.7 4,-1.9 -2,-0.4 14,-0.0 -0.457 18.3-140.0 -66.9 132.0 4.9 21.5 31.2 64 166 A D T 4 S+ 0 0 152 -2,-0.2 -1,-0.1 1,-0.2 -2,-0.0 0.812 97.9 45.7 -64.0 -30.6 2.3 22.5 28.7 65 167 A I T 4 S+ 0 0 116 1,-0.1 -1,-0.2 3,-0.1 -2,-0.0 0.939 133.4 8.3 -81.4 -48.3 3.7 26.0 28.3 66 168 A C T 4 S- 0 0 69 2,-0.1 -2,-0.2 0, 0.0 -1,-0.1 0.521 90.1-123.1-112.8 -8.4 7.4 25.4 28.0 67 169 A G < + 0 0 36 -4,-1.9 -3,-0.1 1,-0.2 2,-0.0 0.431 52.6 158.0 81.4 -1.4 7.8 21.7 27.7 68 170 A R - 0 0 149 -6,-0.2 -5,-2.7 1,-0.1 -1,-0.2 -0.323 35.5-129.7 -58.7 134.9 10.1 21.4 30.7 69 171 A K E -C 62 0C 119 -7,-0.2 2,-0.3 -9,-0.0 -7,-0.2 -0.629 23.2-172.3 -94.9 151.5 10.0 17.8 32.1 70 172 A F E -C 61 0C 24 -9,-1.6 -9,-2.3 -2,-0.2 6,-0.0 -0.976 30.0-134.8-140.7 147.9 9.5 16.6 35.7 71 173 A A S S+ 0 0 14 -2,-0.3 2,-0.3 -12,-0.3 -1,-0.1 0.795 94.5 41.2 -70.3 -30.7 9.8 13.3 37.5 72 174 A R S > S- 0 0 94 -11,-0.1 4,-1.7 1,-0.1 3,-0.4 -0.925 74.2-133.8-124.2 147.5 6.5 13.9 39.3 73 175 A S H > S+ 0 0 61 -2,-0.3 4,-2.8 1,-0.2 5,-0.1 0.871 108.7 56.6 -63.9 -34.9 3.2 15.4 38.3 74 176 A D H > S+ 0 0 79 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.819 104.9 51.3 -69.0 -28.4 3.1 17.6 41.4 75 177 A E H > S+ 0 0 51 -3,-0.4 4,-2.2 2,-0.2 -1,-0.2 0.888 110.8 48.5 -73.3 -38.3 6.5 19.1 40.5 76 178 A R H X S+ 0 0 67 -4,-1.7 4,-3.0 2,-0.2 -2,-0.2 0.942 111.2 50.9 -64.5 -45.0 5.1 19.9 37.1 77 179 A K H X S+ 0 0 156 -4,-2.8 4,-1.1 1,-0.2 -2,-0.2 0.918 110.1 48.9 -57.1 -46.1 2.0 21.4 38.7 78 180 A R H < S+ 0 0 167 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.882 115.7 46.1 -62.0 -36.8 4.2 23.5 41.0 79 181 A H H >< S+ 0 0 16 -4,-2.2 3,-3.4 1,-0.2 4,-0.3 0.977 99.1 64.0 -69.8 -59.1 6.1 24.6 37.9 80 182 A T H >< S+ 0 0 46 -4,-3.0 3,-1.8 1,-0.3 -1,-0.2 0.772 93.6 65.3 -35.8 -40.2 3.4 25.4 35.4 81 183 A K G >< S+ 0 0 127 -4,-1.1 3,-1.0 1,-0.3 -1,-0.3 0.580 83.5 73.9 -66.7 -9.7 2.1 28.2 37.6 82 184 A I G < S+ 0 0 104 -3,-3.4 -1,-0.3 1,-0.2 -2,-0.2 0.731 84.8 67.5 -76.1 -17.3 5.3 30.3 37.2 83 185 A H G < S+ 0 0 71 -3,-1.8 -1,-0.2 -4,-0.3 -2,-0.2 0.542 86.3 94.1 -78.7 -7.0 4.1 31.1 33.6 84 186 A L < 0 0 136 -3,-1.0 -3,-0.0 -4,-0.2 0, 0.0 -0.154 360.0 360.0 -78.3 174.5 1.4 33.1 35.0 85 187 A R 0 0 275 -2,-0.0 -3,-0.0 0, 0.0 -2,-0.0 -0.416 360.0 360.0 177.7 360.0 1.3 36.8 35.7