==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 10-DEC-97 1A1L . COMPND 2 MOLECULE: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.ELROD-ERICKSON,T.E.BENSON,C.O.PABO . 85 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6913.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 46 54.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 10.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 27.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 103 A R 0 0 189 0, 0.0 14,-0.2 0, 0.0 15,-0.1 0.000 360.0 360.0 360.0 77.2 -14.2 8.4 61.8 2 104 A P + 0 0 95 0, 0.0 2,-1.0 0, 0.0 13,-0.1 0.774 360.0 79.2 -84.2 -31.9 -14.3 5.1 63.8 3 105 A Y E -A 14 0A 104 11,-1.5 11,-2.6 12,-0.3 2,-0.2 -0.689 60.3-177.2 -90.5 99.5 -10.7 3.9 63.7 4 106 A A E -A 13 0A 39 -2,-1.0 9,-0.2 9,-0.2 7,-0.1 -0.598 35.8-100.3 -92.5 150.8 -8.4 5.7 66.1 5 107 A C - 0 0 10 7,-2.7 -1,-0.1 -2,-0.2 5,-0.0 -0.587 25.8-147.0 -73.2 120.2 -4.7 5.2 66.5 6 108 A P + 0 0 101 0, 0.0 -1,-0.1 0, 0.0 2,-0.1 0.735 69.3 103.9 -57.6 -30.5 -4.0 2.9 69.5 7 109 A V S S- 0 0 49 1,-0.1 3,-0.1 2,-0.1 -2,-0.1 -0.395 71.8-140.1 -60.4 126.1 -0.7 4.6 70.3 8 110 A E S S+ 0 0 169 1,-0.2 -1,-0.1 -2,-0.1 -3,-0.0 0.927 99.8 47.8 -55.7 -50.1 -1.4 6.8 73.4 9 111 A S S S+ 0 0 94 2,-0.0 2,-0.5 -3,-0.0 -1,-0.2 0.786 102.4 78.5 -64.8 -26.9 0.7 9.7 72.2 10 112 A C + 0 0 17 1,-0.1 17,-0.0 -3,-0.1 -6,-0.0 -0.723 52.0 177.5 -89.5 129.5 -0.9 9.5 68.8 11 113 A D + 0 0 132 -2,-0.5 2,-0.1 -7,-0.1 -1,-0.1 -0.006 33.0 135.1-117.3 27.1 -4.4 11.0 68.4 12 114 A R - 0 0 140 -8,-0.0 -7,-2.7 8,-0.0 2,-0.3 -0.444 34.8-162.5 -76.2 150.2 -4.9 10.4 64.7 13 115 A R E -A 4 0A 116 -9,-0.2 2,-0.3 -2,-0.1 -9,-0.2 -0.986 3.4-163.2-135.4 145.7 -8.2 8.9 63.4 14 116 A F E -A 3 0A 32 -11,-2.6 -11,-1.5 -2,-0.3 3,-0.1 -0.897 22.3-140.3-131.8 159.1 -9.1 7.3 60.1 15 117 A S S S+ 0 0 44 -2,-0.3 2,-0.3 -14,-0.2 -12,-0.3 0.981 90.3 34.2 -76.3 -71.0 -12.2 6.3 58.0 16 118 A R S >> S- 0 0 140 1,-0.1 3,-1.5 -14,-0.1 4,-0.7 -0.700 79.8-128.4 -90.1 141.2 -11.3 2.9 56.6 17 119 A S H >> S+ 0 0 53 -2,-0.3 4,-2.0 1,-0.3 3,-0.7 0.791 104.9 67.6 -58.6 -32.4 -9.2 0.4 58.7 18 120 A D H 3> S+ 0 0 105 1,-0.3 4,-1.6 2,-0.2 -1,-0.3 0.771 97.1 57.6 -60.0 -24.3 -6.7 -0.2 55.9 19 121 A E H <> S+ 0 0 38 -3,-1.5 4,-2.4 2,-0.2 -1,-0.3 0.832 104.6 49.2 -73.4 -35.2 -5.7 3.4 56.5 20 122 A L H < S+ 0 0 115 -4,-1.6 3,-1.6 1,-0.2 4,-0.2 0.960 116.0 49.1 -67.8 -50.2 -0.7 1.8 56.8 23 125 A H H >< S+ 0 0 22 -4,-2.4 3,-2.3 1,-0.3 4,-0.4 0.841 98.3 68.4 -56.1 -39.2 -0.5 4.7 59.3 24 126 A I T >X S+ 0 0 45 -4,-2.7 4,-1.6 1,-0.3 3,-1.2 0.742 85.0 72.6 -56.6 -21.8 0.5 2.3 62.1 25 127 A R H <> S+ 0 0 54 -3,-1.6 4,-1.7 -4,-0.5 5,-0.4 0.710 83.3 66.5 -68.7 -19.1 3.8 1.8 60.4 26 128 A I H <4 S+ 0 0 116 -3,-2.3 -1,-0.3 -4,-0.2 -2,-0.2 0.809 108.7 40.5 -70.9 -24.7 5.0 5.3 61.3 27 129 A H H <4 S+ 0 0 68 -3,-1.2 -2,-0.2 -4,-0.4 -1,-0.2 0.779 118.7 42.9 -91.2 -33.9 4.9 4.0 64.9 28 130 A T H < S- 0 0 92 -4,-1.6 -2,-0.2 2,-0.1 -3,-0.2 0.633 99.9-134.5 -85.8 -17.2 6.4 0.6 64.3 29 131 A G < + 0 0 48 -4,-1.7 2,-0.3 1,-0.2 -3,-0.1 0.599 43.4 165.3 73.5 13.6 9.0 2.0 61.9 30 132 A Q + 0 0 106 -5,-0.4 -1,-0.2 -6,-0.1 -2,-0.1 -0.449 16.6 175.7 -70.8 127.4 8.4 -0.8 59.4 31 133 A K + 0 0 106 -2,-0.3 12,-0.2 1,-0.1 11,-0.2 -0.731 4.2 170.7-132.4 82.1 9.8 -0.1 55.9 32 134 A P + 0 0 69 0, 0.0 2,-0.6 0, 0.0 11,-0.2 0.367 55.5 82.4 -73.7 -0.2 9.1 -3.3 53.8 33 135 A F E -B 42 0B 70 9,-2.0 9,-2.6 2,-0.0 2,-0.4 -0.912 60.2-170.3-118.6 112.3 10.2 -1.7 50.4 34 136 A Q E -B 41 0B 97 -2,-0.6 2,-0.7 7,-0.2 7,-0.2 -0.805 23.2-130.0-106.4 138.3 13.9 -1.6 49.5 35 137 A C > - 0 0 0 5,-2.9 4,-2.4 -2,-0.4 5,-0.2 -0.717 14.2-154.7 -82.5 111.1 15.6 0.2 46.7 36 138 A R T 4 S+ 0 0 216 -2,-0.7 -1,-0.1 1,-0.2 -2,-0.0 0.540 89.4 56.9 -65.9 -4.4 17.9 -2.3 45.0 37 139 A I T 4 S+ 0 0 93 3,-0.1 -1,-0.2 1,-0.0 -2,-0.0 0.911 126.9 9.2 -93.5 -49.9 20.1 0.5 43.8 38 140 A C T 4 S- 0 0 60 2,-0.1 -2,-0.2 -3,-0.0 -1,-0.0 0.358 94.2-125.5-111.2 1.7 21.1 2.3 47.0 39 141 A M < + 0 0 104 -4,-2.4 -3,-0.1 1,-0.2 2,-0.0 0.526 57.6 148.8 66.5 8.5 19.7 -0.3 49.5 40 142 A R - 0 0 162 -5,-0.2 -5,-2.9 -6,-0.1 2,-0.3 -0.376 41.0-130.2 -72.4 153.0 17.6 2.3 51.3 41 143 A N E -B 34 0B 72 -7,-0.2 2,-0.3 -2,-0.0 -7,-0.2 -0.819 20.6-167.7-107.2 147.9 14.3 1.2 52.8 42 144 A F E -B 33 0B 28 -9,-2.6 -9,-2.0 -2,-0.3 6,-0.1 -0.966 26.6-136.0-134.8 151.0 10.9 2.9 52.4 43 145 A S S S+ 0 0 39 -2,-0.3 2,-0.4 -12,-0.2 -1,-0.1 0.751 89.6 40.7 -76.7 -21.1 7.5 2.5 54.1 44 146 A R > - 0 0 55 -11,-0.1 4,-0.9 1,-0.1 5,-0.1 -0.952 67.7-138.0-137.3 146.1 5.5 2.6 50.9 45 147 A S H > S+ 0 0 64 -2,-0.4 4,-1.7 1,-0.2 -1,-0.1 0.843 105.3 53.8 -67.1 -35.2 5.9 1.1 47.4 46 148 A D H > S+ 0 0 73 1,-0.2 4,-1.6 2,-0.2 -1,-0.2 0.852 107.5 50.3 -70.7 -33.6 4.7 4.2 45.6 47 149 A H H > S+ 0 0 84 1,-0.2 4,-1.1 2,-0.2 -1,-0.2 0.716 108.8 53.3 -76.5 -20.5 7.3 6.4 47.4 48 150 A L H X S+ 0 0 25 -4,-0.9 4,-2.5 2,-0.2 -2,-0.2 0.848 105.0 54.8 -78.0 -38.9 10.0 3.8 46.4 49 151 A T H X S+ 0 0 72 -4,-1.7 4,-0.8 1,-0.2 -2,-0.2 0.933 113.1 41.0 -59.8 -47.4 9.0 4.1 42.7 50 152 A T H < S+ 0 0 31 -4,-1.6 3,-0.3 1,-0.2 4,-0.3 0.827 111.7 57.5 -72.0 -29.7 9.4 7.8 42.7 51 153 A H H >< S+ 0 0 30 -4,-1.1 3,-2.3 1,-0.2 4,-0.3 0.932 100.6 56.9 -63.6 -47.5 12.6 7.6 44.8 52 154 A I H >X S+ 0 0 47 -4,-2.5 4,-2.0 1,-0.3 3,-1.9 0.773 92.2 69.9 -55.7 -29.2 14.2 5.3 42.2 53 155 A R H 3X S+ 0 0 45 -4,-0.8 4,-1.9 -3,-0.3 -1,-0.3 0.696 87.8 66.3 -64.2 -15.8 13.7 8.0 39.5 54 156 A T H <4 S+ 0 0 101 -3,-2.3 -1,-0.3 -4,-0.3 -2,-0.2 0.715 107.4 40.1 -76.2 -21.7 16.4 10.0 41.4 55 157 A H H <4 S+ 0 0 75 -3,-1.9 -2,-0.2 -4,-0.3 -1,-0.1 0.886 123.4 36.7 -88.1 -52.4 18.9 7.3 40.4 56 158 A T H < S- 0 0 89 -4,-2.0 -2,-0.2 2,-0.1 -3,-0.2 0.683 95.5-132.5 -76.5 -24.5 17.7 6.7 36.8 57 159 A G < + 0 0 47 -4,-1.9 2,-0.2 1,-0.3 -3,-0.1 0.586 45.4 162.0 80.5 8.6 16.7 10.3 35.9 58 160 A E + 0 0 104 -6,-0.2 -1,-0.3 -5,-0.2 -2,-0.1 -0.457 13.5 179.5 -64.3 130.4 13.4 9.2 34.5 59 161 A K + 0 0 109 -2,-0.2 12,-0.3 -3,-0.1 11,-0.1 -0.739 10.2 170.1-138.7 87.5 11.1 12.2 34.3 60 162 A P + 0 0 60 0, 0.0 2,-0.7 0, 0.0 11,-0.2 0.477 55.8 83.0 -75.3 -6.9 7.6 11.3 32.8 61 163 A F E -C 70 0C 55 9,-2.5 9,-2.2 11,-0.1 2,-0.4 -0.865 57.5-172.7-112.0 110.4 5.8 14.6 33.6 62 164 A A E -C 69 0C 43 -2,-0.7 7,-0.2 7,-0.2 2,-0.2 -0.767 27.5-115.2-103.5 138.7 6.2 17.5 31.2 63 165 A C > - 0 0 5 5,-2.1 4,-1.4 -2,-0.4 14,-0.0 -0.506 17.9-140.8 -67.7 132.4 5.0 21.1 31.7 64 166 A D T 4 S+ 0 0 157 -2,-0.2 -1,-0.1 2,-0.2 -2,-0.0 0.737 96.7 44.1 -67.6 -25.2 2.4 22.1 29.2 65 167 A I T 4 S+ 0 0 119 3,-0.1 -1,-0.1 1,-0.1 -2,-0.0 0.934 133.7 7.7 -86.6 -52.2 3.7 25.6 28.8 66 168 A C T 4 S- 0 0 71 2,-0.1 -2,-0.2 14,-0.0 -1,-0.1 0.489 91.7-122.1-110.5 -8.2 7.5 25.2 28.5 67 169 A G < + 0 0 40 -4,-1.4 2,-0.2 1,-0.2 -3,-0.1 0.535 50.9 160.5 79.4 6.4 7.9 21.5 28.3 68 170 A R - 0 0 154 -6,-0.1 -5,-2.1 1,-0.1 -1,-0.2 -0.427 33.9-129.2 -65.5 133.6 10.2 21.1 31.4 69 171 A K E -C 62 0C 125 -7,-0.2 2,-0.3 -2,-0.2 -7,-0.2 -0.575 23.9-173.0 -92.9 149.1 10.2 17.6 32.7 70 172 A F E -C 61 0C 27 -9,-2.2 -9,-2.5 -2,-0.2 6,-0.0 -0.961 30.5-137.0-138.2 151.5 9.7 16.2 36.2 71 173 A A S S+ 0 0 15 -2,-0.3 2,-0.3 -12,-0.3 -18,-0.1 0.711 94.8 39.2 -76.9 -24.3 9.9 12.9 38.0 72 174 A R S > S- 0 0 97 -11,-0.1 4,-1.4 1,-0.1 3,-0.2 -0.942 75.4-132.3-128.7 149.4 6.6 13.5 39.9 73 175 A S H > S+ 0 0 57 -2,-0.3 4,-2.6 1,-0.2 5,-0.1 0.833 108.3 57.1 -69.2 -30.4 3.4 15.1 38.8 74 176 A D H > S+ 0 0 77 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.814 103.1 53.2 -71.2 -29.6 3.3 17.3 41.9 75 177 A E H > S+ 0 0 53 2,-0.2 4,-1.4 1,-0.2 -1,-0.2 0.901 112.6 45.6 -68.6 -38.9 6.7 18.7 41.1 76 178 A R H X S+ 0 0 65 -4,-1.4 4,-3.1 2,-0.2 -2,-0.2 0.899 111.6 51.7 -68.5 -41.6 5.2 19.6 37.7 77 179 A K H X S+ 0 0 154 -4,-2.6 4,-0.8 1,-0.2 -2,-0.2 0.921 111.3 47.1 -61.3 -44.1 2.0 21.0 39.3 78 180 A R H < S+ 0 0 171 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.788 115.6 47.4 -67.4 -30.1 4.1 23.2 41.6 79 181 A H H >< S+ 0 0 20 -4,-1.4 3,-2.8 1,-0.2 4,-0.3 0.929 97.3 67.2 -77.7 -47.5 6.2 24.3 38.6 80 182 A T H >< S+ 0 0 46 -4,-3.1 3,-1.5 1,-0.3 -2,-0.2 0.787 91.6 64.0 -45.6 -35.5 3.4 25.1 36.1 81 183 A K G >< S+ 0 0 137 -4,-0.8 3,-1.3 1,-0.3 -1,-0.3 0.584 81.5 77.2 -69.6 -10.9 2.2 28.1 38.2 82 184 A I G < S+ 0 0 102 -3,-2.8 -1,-0.3 1,-0.2 -2,-0.2 0.717 84.8 67.0 -72.0 -14.0 5.4 30.0 37.7 83 185 A H G < S+ 0 0 54 -3,-1.5 2,-0.3 -4,-0.3 -1,-0.2 0.528 87.8 81.9 -81.5 -5.5 4.1 30.9 34.2 84 186 A L < 0 0 129 -3,-1.3 0, 0.0 -4,-0.1 0, 0.0 -0.678 360.0 360.0 -98.1 151.9 1.3 33.0 35.6 85 187 A R 0 0 259 -2,-0.3 -2,-0.1 0, 0.0 -3,-0.0 -0.905 360.0 360.0 172.9 360.0 1.6 36.6 36.7