==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-FEB-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 21-SEP-11 4A20 . COMPND 2 MOLECULE: UBIQUITIN-LIKE PROTEIN MDY2; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR A.C.SIMON,P.J.SIMPSON,J.W.MURRAY,R.L.ISAACSON . 80 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5047.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 67.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 6.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 26.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 72 A A 0 0 127 0, 0.0 2,-0.4 0, 0.0 23,-0.2 0.000 360.0 360.0 360.0 14.0 48.4 3.5 -5.4 2 73 A A - 0 0 69 20,-0.2 2,-0.6 21,-0.1 20,-0.2 -0.988 360.0-161.7-115.1 140.8 45.8 0.9 -4.2 3 74 A V E -A 21 0A 17 18,-2.9 18,-3.2 -2,-0.4 2,-0.5 -0.960 17.3-160.9-112.5 104.1 43.5 1.3 -1.2 4 75 A H E -A 20 0A 73 -2,-0.6 2,-0.4 16,-0.3 16,-0.2 -0.767 15.5-179.6 -90.9 123.5 42.3 -2.2 -0.4 5 76 A L E -A 19 0A 0 14,-2.6 14,-2.2 -2,-0.5 2,-0.5 -0.957 28.7-144.1-126.8 146.8 39.1 -2.3 1.7 6 77 A T E -Ab 18 72A 24 65,-2.2 67,-3.7 -2,-0.4 2,-0.6 -0.922 17.9-155.5 -97.3 135.1 36.8 -4.8 3.3 7 78 A L E -Ab 17 73A 0 10,-2.9 10,-2.1 -2,-0.5 2,-0.5 -0.962 15.9-175.7-115.1 110.7 33.1 -3.6 3.3 8 79 A K E -Ab 16 74A 95 65,-2.8 67,-2.7 -2,-0.6 2,-0.5 -0.959 16.1-153.6-121.1 117.6 31.2 -5.3 6.1 9 80 A K E -Ab 15 75A 13 6,-2.5 6,-0.9 -2,-0.5 67,-0.2 -0.791 8.7-169.4 -89.7 129.2 27.5 -4.8 6.7 10 81 A I + 0 0 79 65,-1.3 2,-0.4 -2,-0.5 4,-0.1 0.527 62.2 62.9-106.1 -11.1 26.7 -5.4 10.2 11 82 A Q S S- 0 0 106 64,-0.4 66,-0.1 2,-0.2 64,-0.0 -0.924 101.8 -57.0-110.4 147.9 22.9 -5.6 10.4 12 83 A A S S+ 0 0 87 -2,-0.4 2,-0.1 1,-0.2 -2,-0.1 -0.409 125.4 50.6 -65.8 135.0 20.9 -8.4 8.5 13 84 A P S S- 0 0 104 0, 0.0 -2,-0.2 0, 0.0 -1,-0.2 0.291 93.0-177.3 -79.2 124.3 21.2 -8.8 5.6 14 85 A K + 0 0 149 -4,-0.1 2,-0.3 -2,-0.1 -4,-0.2 -0.380 9.8 171.2 -86.2 164.8 24.9 -8.8 6.3 15 86 A F E -A 9 0A 26 -6,-0.9 -6,-2.5 -2,-0.1 2,-0.3 -0.929 21.8-156.4-160.6 160.0 27.8 -9.2 3.9 16 87 A S E +A 8 0A 68 -2,-0.3 2,-0.3 -8,-0.2 -8,-0.2 -0.850 27.3 159.9-140.1 109.3 31.6 -8.9 3.8 17 88 A I E -A 7 0A 33 -10,-2.1 -10,-2.9 -2,-0.3 2,-0.3 -0.803 23.6-144.1-125.7 162.6 33.2 -8.1 0.4 18 89 A E E +A 6 0A 125 -2,-0.3 2,-0.3 -12,-0.2 -12,-0.2 -0.953 18.7 168.7-129.4 154.0 36.6 -6.7 -0.6 19 90 A H E -A 5 0A 73 -14,-2.2 -14,-2.6 -2,-0.3 2,-0.6 -0.976 32.7-123.4-160.6 150.0 37.8 -4.4 -3.3 20 91 A D E -A 4 0A 99 -2,-0.3 -16,-0.3 -16,-0.2 2,-0.2 -0.887 35.8-173.5 -96.9 117.5 40.9 -2.4 -4.4 21 92 A F E -A 3 0A 8 -18,-3.2 -18,-2.9 -2,-0.6 -2,-0.0 -0.589 25.6-107.5-104.8 163.6 40.0 1.2 -4.8 22 93 A S > - 0 0 54 -20,-0.2 3,-1.8 -2,-0.2 39,-0.3 -0.720 23.4-124.9 -86.1 146.8 42.1 4.1 -6.2 23 94 A P T 3 S+ 0 0 42 0, 0.0 39,-1.7 0, 0.0 38,-0.3 0.830 112.1 56.5 -60.8 -30.7 43.4 6.7 -3.7 24 95 A S T 3 S+ 0 0 92 37,-0.2 -3,-0.0 -23,-0.2 0, 0.0 0.558 86.5 103.9 -78.4 -8.9 41.7 9.4 -5.9 25 96 A D < - 0 0 34 -3,-1.8 36,-2.4 35,-0.1 37,-0.3 -0.236 65.9-133.5 -67.4 158.0 38.3 7.7 -5.6 26 97 A T B >> -E 60 0B 19 34,-0.2 4,-1.0 35,-0.1 3,-1.0 -0.723 27.3-102.0-104.5 170.9 35.7 9.2 -3.3 27 98 A I H 3> S+ 0 0 0 32,-2.0 4,-2.2 29,-0.4 3,-0.5 0.870 121.9 66.4 -56.5 -34.5 33.4 7.6 -0.7 28 99 A L H 3> S+ 0 0 51 29,-1.8 4,-2.9 1,-0.2 -1,-0.2 0.890 96.8 55.5 -51.1 -42.1 30.7 7.9 -3.4 29 100 A Q H <> S+ 0 0 56 -3,-1.0 4,-2.2 28,-0.2 -1,-0.2 0.841 104.4 51.2 -64.3 -35.9 32.7 5.4 -5.4 30 101 A I H X S+ 0 0 0 -4,-1.0 4,-1.9 -3,-0.5 -2,-0.2 0.956 112.1 47.5 -63.5 -49.2 32.5 2.9 -2.6 31 102 A K H X S+ 0 0 18 -4,-2.2 4,-2.1 1,-0.2 -2,-0.2 0.925 111.3 50.7 -54.7 -49.7 28.7 3.4 -2.4 32 103 A Q H X S+ 0 0 88 -4,-2.9 4,-3.0 1,-0.2 -1,-0.2 0.878 107.3 53.7 -57.0 -41.5 28.5 3.0 -6.2 33 104 A H H X S+ 0 0 25 -4,-2.2 4,-2.2 2,-0.2 -1,-0.2 0.881 107.1 51.9 -57.2 -42.8 30.5 -0.3 -5.9 34 105 A L H <>S+ 0 0 0 -4,-1.9 5,-2.9 2,-0.2 6,-0.6 0.902 111.0 47.2 -63.7 -38.9 28.0 -1.5 -3.3 35 106 A I H ><5S+ 0 0 48 -4,-2.1 3,-2.2 4,-0.2 -2,-0.2 0.952 110.8 51.9 -66.1 -47.2 25.1 -0.7 -5.8 36 107 A S H 3<5S+ 0 0 82 -4,-3.0 -2,-0.2 1,-0.3 -1,-0.2 0.865 108.7 51.0 -52.7 -39.1 27.1 -2.5 -8.6 37 108 A E T 3<5S- 0 0 88 -4,-2.2 -1,-0.3 -5,-0.1 -2,-0.2 0.181 118.3-114.0 -84.9 11.5 27.5 -5.6 -6.4 38 109 A E T < 5S+ 0 0 169 -3,-2.2 -3,-0.2 2,-0.2 -2,-0.1 0.756 83.3 122.3 62.0 30.9 23.7 -5.5 -5.7 39 110 A K S - 0 0 100 1,-0.1 3,-1.6 -7,-0.0 4,-0.5 -0.992 64.2-134.0-140.1 142.3 20.4 3.9 -3.9 43 114 A I G > S+ 0 0 43 -2,-0.4 3,-1.8 1,-0.3 -1,-0.1 0.898 105.2 61.5 -57.8 -42.5 23.4 5.9 -2.8 44 115 A S G 3 S+ 0 0 74 1,-0.3 -1,-0.3 -3,-0.1 34,-0.1 0.644 98.0 58.6 -61.7 -19.2 21.3 7.9 -0.3 45 116 A E G < S+ 0 0 48 -3,-1.6 33,-2.3 32,-0.1 2,-0.4 0.686 90.0 89.2 -83.1 -18.8 20.5 4.7 1.7 46 117 A I E < -C 77 0A 7 -3,-1.8 2,-0.4 -4,-0.5 31,-0.2 -0.688 49.1-178.0 -94.6 126.5 24.1 3.9 2.4 47 118 A K E -C 76 0A 108 29,-3.0 29,-2.7 -2,-0.4 2,-0.4 -0.994 8.6-166.2-117.9 130.5 26.1 5.1 5.4 48 119 A L E -CD 75 55A 0 7,-0.5 7,-3.0 -2,-0.4 2,-0.3 -0.930 7.9-179.2-115.4 145.1 29.8 4.1 5.7 49 120 A L E -CD 74 54A 26 25,-2.2 25,-2.5 -2,-0.4 2,-0.4 -0.971 16.9-163.2-138.1 154.3 31.8 4.4 8.8 50 121 A L E > S- D 0 53A 18 3,-2.1 3,-2.1 -2,-0.3 23,-0.1 -0.988 86.0 -9.1-138.5 127.1 35.4 3.8 10.0 51 122 A K T 3 S- 0 0 110 -2,-0.4 -1,-0.1 21,-0.3 3,-0.1 0.849 130.7 -57.3 53.0 38.2 36.1 3.6 13.6 52 123 A G T 3 S+ 0 0 67 1,-0.2 2,-0.4 22,-0.0 -1,-0.3 0.499 110.5 121.8 80.3 -1.0 32.7 4.8 14.3 53 124 A K E < -D 50 0A 153 -3,-2.1 -3,-2.1 1,-0.0 2,-0.3 -0.842 66.0-118.5 -94.9 132.6 33.1 8.0 12.2 54 125 A V E -D 49 0A 48 -2,-0.4 2,-0.7 -5,-0.2 -5,-0.3 -0.521 20.0-143.7 -71.2 136.4 30.7 8.6 9.3 55 126 A L E -D 48 0A 12 -7,-3.0 -7,-0.5 -2,-0.3 2,-0.1 -0.891 18.2-147.0-105.4 108.3 32.5 8.9 6.0 56 127 A H > - 0 0 133 -2,-0.7 3,-1.9 1,-0.1 -29,-0.4 -0.399 23.9-105.0 -81.0 157.6 30.8 11.5 3.9 57 128 A D T 3 S+ 0 0 59 1,-0.3 -29,-1.8 -30,-0.2 -30,-0.3 0.752 114.4 53.6 -57.0 -32.2 30.5 11.2 0.1 58 129 A N T 3 S+ 0 0 144 -31,-0.2 -1,-0.3 -32,-0.1 2,-0.1 0.552 80.1 113.6 -83.7 -9.3 33.1 13.8 -0.8 59 130 A L < - 0 0 52 -3,-1.9 -32,-2.0 1,-0.1 2,-0.3 -0.366 64.8-130.2 -63.0 134.3 35.9 12.3 1.3 60 131 A F B > -E 26 0B 93 -34,-0.2 3,-2.2 1,-0.1 4,-0.4 -0.653 11.4-127.7 -86.5 146.2 38.8 10.9 -0.8 61 132 A L G > S+ 0 0 2 -36,-2.4 3,-1.4 -38,-0.3 -37,-0.2 0.818 109.7 65.5 -64.7 -27.1 40.1 7.4 -0.0 62 133 A S G 3 S+ 0 0 74 -39,-1.7 -1,-0.3 -37,-0.3 -38,-0.1 0.640 97.4 56.9 -64.7 -14.6 43.6 8.8 0.3 63 134 A D G < S+ 0 0 83 -3,-2.2 2,-0.3 -40,-0.2 -1,-0.2 0.458 83.4 108.0 -94.8 -4.8 42.2 10.7 3.4 64 135 A L S < S- 0 0 14 -3,-1.4 2,-1.9 -4,-0.4 -3,-0.0 -0.553 72.9-132.9 -71.9 134.2 41.1 7.4 5.1 65 136 A K + 0 0 176 -2,-0.3 2,-0.3 -15,-0.1 -1,-0.1 -0.510 45.7 159.9 -86.3 82.5 43.2 6.4 8.0 66 137 A V + 0 0 49 -2,-1.9 5,-0.2 5,-0.1 -61,-0.0 -0.724 10.4 168.1-107.8 146.9 43.6 2.7 7.0 67 138 A T B > -F 70 0C 82 3,-1.7 3,-1.0 -2,-0.3 -2,-0.0 -0.902 53.0 -90.2-141.1 172.8 46.4 0.4 8.3 68 139 A P T 3 S+ 0 0 138 0, 0.0 3,-0.3 0, 0.0 -1,-0.0 0.899 124.8 57.2 -58.7 -36.1 47.1 -3.3 8.1 69 140 A A T 3 S+ 0 0 96 1,-0.2 2,-0.3 2,-0.0 3,-0.0 0.758 122.8 14.2 -65.2 -24.8 45.2 -3.8 11.4 70 141 A N B < +F 67 0C 75 -3,-1.0 -3,-1.7 1,-0.1 -1,-0.2 -0.811 53.4 141.1-165.3 110.2 42.0 -2.2 10.0 71 142 A S + 0 0 29 -2,-0.3 -65,-2.2 -3,-0.3 2,-0.5 -0.178 46.8 125.8-133.2 34.2 41.0 -1.5 6.6 72 143 A T E -b 6 0A 49 -67,-0.2 2,-0.5 -65,-0.1 -21,-0.3 -0.901 46.1-155.1-104.5 125.0 37.4 -2.5 7.2 73 144 A I E -b 7 0A 0 -67,-3.7 -65,-2.8 -2,-0.5 2,-0.4 -0.822 14.4-135.4 -96.2 129.7 34.6 -0.2 6.5 74 145 A T E -bC 8 49A 43 -25,-2.5 -25,-2.2 -2,-0.5 2,-0.4 -0.743 21.1-153.0 -87.9 132.0 31.3 -0.7 8.4 75 146 A V E +bC 9 48A 0 -67,-2.7 -65,-1.3 -2,-0.4 -64,-0.4 -0.915 15.8 178.9-111.9 129.8 28.2 -0.5 6.2 76 147 A M E - C 0 47A 53 -29,-2.7 -29,-3.0 -2,-0.4 2,-0.4 -0.990 7.4-165.5-125.0 143.4 24.8 0.6 7.3 77 148 A I E + C 0 46A 39 -2,-0.4 -31,-0.2 -31,-0.2 -32,-0.1 -0.987 13.9 165.2-135.2 127.5 21.8 0.8 5.0 78 149 A K - 0 0 77 -33,-2.3 -2,-0.0 -2,-0.4 0, 0.0 -0.992 36.5-102.5-142.5 143.8 18.5 2.6 5.9 79 150 A P 0 0 111 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.218 360.0 360.0 -69.3 160.4 15.6 3.7 3.8 80 151 A N 0 0 150 0, 0.0 -35,-0.0 0, 0.0 0, 0.0 0.836 360.0 360.0-100.1 360.0 14.9 7.3 2.7