==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 25-JUN-05 2A3P . COMPND 2 MOLECULE: COG3005: NITRATE/TMAO REDUCTASES, MEMBRANE-BOUND . SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO DESULFURICANS SUBSP. . AUTHOR M.V.PATTARKINE,Y.-H.LEE,J.J.TANNER,J.D.WALL . 107 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8104.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 53.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 6 5.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 8.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 11.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 15.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 108 0, 0.0 2,-0.4 0, 0.0 28,-0.1 0.000 360.0 360.0 360.0 174.1 29.5 -11.5 2.5 2 2 A E - 0 0 174 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.773 360.0-113.9-105.8 137.0 29.3 -9.3 -0.6 3 3 A A - 0 0 67 -2,-0.4 2,-0.1 1,-0.1 3,-0.1 -0.359 39.1-119.1 -60.4 142.0 26.8 -6.6 -1.3 4 4 A P - 0 0 67 0, 0.0 17,-0.3 0, 0.0 18,-0.1 -0.382 37.8 -79.4 -78.1 169.5 24.6 -7.5 -4.3 5 5 A A - 0 0 84 1,-0.1 3,-0.3 -2,-0.1 16,-0.3 -0.020 54.5 -91.6 -60.0 165.7 24.4 -5.5 -7.5 6 6 A D S S+ 0 0 82 1,-0.2 14,-0.2 14,-0.2 -1,-0.1 -0.263 97.1 55.5 -74.0 166.0 22.3 -2.3 -7.9 7 7 A G + 0 0 47 1,-0.2 2,-0.3 12,-0.0 -1,-0.2 0.682 64.1 164.0 85.4 22.3 18.7 -2.1 -9.0 8 8 A L E -A 19 0A 62 11,-1.4 11,-3.4 -3,-0.3 2,-0.5 -0.542 31.8-133.1 -71.3 129.8 17.2 -4.5 -6.5 9 9 A K E -A 18 0A 66 -2,-0.3 2,-0.8 9,-0.2 9,-0.2 -0.765 11.6-160.2 -92.8 124.1 13.4 -4.2 -6.2 10 10 A M E +A 17 0A 44 7,-3.0 7,-1.7 -2,-0.5 3,-0.2 -0.905 29.6 159.4 -93.6 105.3 11.7 -4.0 -2.9 11 11 A E + 0 0 114 -2,-0.8 -1,-0.1 5,-0.2 -2,-0.0 -0.263 27.1 116.2-135.7 49.8 8.2 -5.1 -4.0 12 12 A N S S+ 0 0 70 3,-0.1 2,-0.2 2,-0.0 -1,-0.1 0.526 82.2 45.6 -84.1 -8.7 6.0 -6.3 -1.1 13 13 A T S S- 0 0 62 -3,-0.2 41,-0.0 1,-0.0 -3,-0.0 -0.784 93.1-103.5-130.1 171.0 3.7 -3.4 -1.6 14 14 A K S S+ 0 0 133 -2,-0.2 -3,-0.0 1,-0.2 -1,-0.0 0.326 116.4 60.4 -73.0 5.2 1.9 -1.5 -4.4 15 15 A M S S- 0 0 82 -5,-0.0 -1,-0.2 2,-0.0 -3,-0.1 -0.484 80.5-174.0-131.0 64.0 4.6 1.2 -3.9 16 16 A P - 0 0 71 0, 0.0 2,-0.3 0, 0.0 -5,-0.2 -0.095 7.0-154.4 -68.7 159.7 7.9 -0.6 -4.7 17 17 A V E -A 10 0A 32 -7,-1.7 -7,-3.0 89,-0.1 2,-0.6 -0.965 15.1-125.9-134.1 146.2 11.4 1.0 -4.3 18 18 A I E -A 9 0A 104 86,-0.4 2,-0.6 -2,-0.3 -9,-0.2 -0.830 24.9-157.6 -94.8 118.6 14.7 0.4 -6.0 19 19 A F E -A 8 0A 50 -11,-3.4 -11,-1.4 -2,-0.6 2,-0.6 -0.870 6.4-168.4-104.1 121.6 17.5 -0.4 -3.5 20 20 A N > - 0 0 43 -2,-0.6 3,-1.1 -14,-0.2 -14,-0.2 -0.923 14.0-160.7-109.8 115.6 21.1 0.2 -4.5 21 21 A H G > S+ 0 0 31 -2,-0.6 3,-1.7 -16,-0.3 4,-0.2 0.794 90.4 68.3 -60.9 -28.0 23.8 -1.2 -2.2 22 22 A S G > S+ 0 0 68 1,-0.3 3,-0.6 2,-0.2 -1,-0.2 0.794 94.9 54.1 -63.7 -31.3 26.3 1.3 -3.9 23 23 A S G < S+ 0 0 80 -3,-1.1 -1,-0.3 1,-0.2 -2,-0.2 0.435 118.2 37.4 -75.7 -2.0 24.4 4.3 -2.3 24 24 A H G X S+ 0 0 53 -3,-1.7 3,-1.8 -4,-0.1 -2,-0.2 0.221 77.0 113.1-137.3 12.1 24.9 2.6 1.1 25 25 A S T < + 0 0 92 -3,-0.6 -3,-0.1 1,-0.3 -2,-0.1 0.526 69.0 67.6 -77.8 -6.2 28.3 1.0 0.9 26 26 A S T 3 S+ 0 0 122 -4,-0.1 2,-0.3 2,-0.1 -1,-0.3 0.501 91.2 83.0 -84.0 -5.1 29.8 3.3 3.6 27 27 A Y S < S- 0 0 115 -3,-1.8 2,-0.1 1,-0.1 -3,-0.1 -0.736 90.3-106.3 -99.0 145.5 27.5 1.6 6.1 28 28 A Q > - 0 0 145 -2,-0.3 3,-1.7 1,-0.1 4,-0.4 -0.432 27.9-120.6 -65.1 141.8 28.2 -1.6 7.9 29 29 A C G >> S+ 0 0 78 1,-0.3 4,-2.7 2,-0.2 3,-1.7 0.919 113.2 55.7 -44.8 -50.5 26.2 -4.6 6.6 30 30 A A G 34 S+ 0 0 49 1,-0.3 -1,-0.3 2,-0.2 -2,-0.0 0.578 84.1 82.5 -68.3 -11.0 24.7 -5.1 10.1 31 31 A D G <4 S+ 0 0 80 -3,-1.7 46,-0.6 1,-0.1 -1,-0.3 0.798 119.8 7.7 -60.3 -28.3 23.4 -1.5 10.2 32 32 A C T <4 S+ 0 0 81 -3,-1.7 2,-1.7 -4,-0.4 -2,-0.2 0.653 130.3 57.4-118.1 -44.9 20.4 -2.9 8.2 33 33 A H S < S- 0 0 58 -4,-2.7 8,-0.5 -5,-0.2 -2,-0.1 -0.468 82.9-173.4 -84.8 63.4 21.0 -6.6 8.1 34 34 A H - 0 0 48 -2,-1.7 -3,-0.1 -3,-0.1 42,-0.0 -0.306 29.5-101.3 -59.1 142.2 20.9 -6.7 12.0 35 35 A P - 0 0 71 0, 0.0 2,-0.4 0, 0.0 5,-0.2 -0.286 34.2-154.7 -66.4 150.3 21.8 -10.1 13.5 36 36 A V B > S-B 39 0B 59 3,-2.1 3,-1.6 1,-0.1 -3,-0.0 -0.998 72.3 -6.5-132.0 130.2 19.0 -12.3 14.7 37 37 A D T 3 S- 0 0 143 -2,-0.4 -1,-0.1 1,-0.3 3,-0.1 0.777 127.9 -61.4 57.0 31.1 19.4 -14.9 17.4 38 38 A G T 3 S+ 0 0 77 1,-0.3 2,-0.3 3,-0.0 -1,-0.3 0.574 114.7 108.0 77.8 13.1 23.1 -14.3 17.3 39 39 A K B < S-B 36 0B 137 -3,-1.6 -3,-2.1 1,-0.0 -1,-0.3 -0.868 81.4 -91.1-122.6 152.0 23.5 -15.3 13.7 40 40 A E - 0 0 168 -2,-0.3 2,-0.5 -5,-0.2 -6,-0.1 -0.394 42.1-157.2 -60.8 136.2 24.1 -13.4 10.5 41 41 A N + 0 0 33 -8,-0.5 -1,-0.1 1,-0.1 -4,-0.0 -0.893 33.6 151.7-127.8 98.8 20.8 -12.4 9.1 42 42 A L + 0 0 106 -2,-0.5 -1,-0.1 2,-0.0 3,-0.1 0.203 36.8 129.4-109.1 12.7 20.7 -11.6 5.3 43 43 A A S S- 0 0 49 1,-0.1 2,-0.1 2,-0.1 -2,-0.1 -0.281 72.3 -85.7 -67.7 153.6 17.0 -12.6 4.9 44 44 A K > - 0 0 122 1,-0.1 3,-2.1 2,-0.1 7,-0.2 -0.369 38.9-121.3 -63.9 135.6 14.5 -10.4 3.2 45 45 A C T 3 S+ 0 0 55 1,-0.3 6,-2.2 5,-0.1 -1,-0.1 0.824 109.1 51.1 -47.8 -44.7 13.0 -7.9 5.7 46 46 A A T 3 S+ 0 0 18 4,-0.2 -1,-0.3 6,-0.1 3,-0.1 0.128 78.6 142.7 -88.9 22.5 9.4 -9.0 5.2 47 47 A T X - 0 0 56 -3,-2.1 3,-2.5 1,-0.1 4,-0.2 -0.303 67.9 -84.0 -55.4 141.2 10.1 -12.8 5.7 48 48 A A T 3 S+ 0 0 90 1,-0.3 -1,-0.1 2,-0.1 3,-0.1 -0.286 120.9 21.1 -52.5 127.7 7.4 -14.6 7.6 49 49 A G T 3 S+ 0 0 55 1,-0.1 -1,-0.3 -3,-0.1 -2,-0.1 0.377 121.0 69.7 90.4 -1.2 7.9 -14.2 11.4 50 50 A C S < S- 0 0 49 -3,-2.5 2,-0.8 12,-0.1 3,-0.2 0.481 117.4 -20.3-113.6-111.7 10.0 -11.0 10.7 51 51 A H S S+ 0 0 25 -6,-2.2 11,-0.1 -7,-0.2 -3,-0.1 -0.501 90.4 131.4-101.4 65.2 8.7 -7.7 9.4 52 52 A D + 0 0 63 -2,-0.8 2,-0.6 -5,-0.2 -1,-0.2 0.383 30.2 101.2-105.2 -0.6 5.6 -9.3 8.0 53 53 A V B -c 63 0C 45 9,-2.3 11,-2.7 -3,-0.2 12,-0.6 -0.803 43.7-176.5 -89.5 123.8 2.7 -7.0 9.2 54 54 A F + 0 0 82 -2,-0.6 2,-0.3 9,-0.2 -1,-0.1 0.462 44.2 116.9-104.3 -5.2 1.6 -4.7 6.4 55 55 A D - 0 0 101 1,-0.2 3,-0.5 2,-0.1 10,-0.3 -0.511 58.3-150.4 -57.2 122.4 -1.0 -2.7 8.4 56 56 A K S S+ 0 0 147 -2,-0.3 -1,-0.2 1,-0.2 7,-0.0 0.705 94.1 58.7 -76.0 -20.0 0.5 0.8 8.3 57 57 A K S S+ 0 0 71 2,-0.0 -1,-0.2 8,-0.0 2,-0.1 0.672 80.8 107.3 -80.5 -21.5 -1.1 1.6 11.7 58 58 A D - 0 0 46 -3,-0.5 8,-0.3 1,-0.1 7,-0.0 -0.389 44.7-177.5 -60.2 129.7 0.8 -1.3 13.4 59 59 A K + 0 0 164 -2,-0.1 -1,-0.1 6,-0.1 -3,-0.0 0.290 43.2 115.7-113.4 4.0 3.6 -0.0 15.6 60 60 A S S > S- 0 0 47 1,-0.1 3,-2.0 2,-0.0 6,-0.2 -0.230 85.1-101.2 -70.6 166.2 4.9 -3.4 16.7 61 61 A V T 3 S+ 0 0 100 1,-0.3 -1,-0.1 5,-0.1 6,-0.1 0.685 121.1 63.9 -60.1 -19.7 8.4 -4.6 15.8 62 62 A H T 3 S+ 0 0 75 -11,-0.1 -9,-2.3 -10,-0.1 2,-0.5 0.503 72.9 117.9 -84.7 -9.1 6.8 -6.7 13.0 63 63 A S B <> -c 53 0C 0 -3,-2.0 4,-1.7 1,-0.2 -9,-0.2 -0.506 47.7-165.3 -64.4 115.4 5.5 -3.7 11.1 64 64 A Y H > S+ 0 0 15 -11,-2.7 4,-0.7 -2,-0.5 5,-0.2 0.888 92.7 53.5 -60.2 -44.8 7.1 -3.5 7.6 65 65 A Y H >> S+ 0 0 101 -12,-0.6 4,-3.2 -10,-0.3 3,-0.6 0.911 107.9 50.6 -56.6 -47.1 5.9 0.1 7.4 66 66 A K H 3> S+ 0 0 66 -8,-0.3 4,-2.5 1,-0.2 -2,-0.2 0.927 104.4 54.1 -56.0 -52.7 7.6 1.1 10.7 67 67 A I H 3< S+ 0 0 41 -4,-1.7 12,-0.7 1,-0.2 -1,-0.2 0.640 122.0 32.5 -66.8 -12.9 11.0 -0.3 10.0 68 68 A I H << S+ 0 0 25 -4,-0.7 12,-2.4 -3,-0.6 -2,-0.2 0.798 129.1 29.9-101.5 -46.1 11.1 1.7 6.8 69 69 A H H < S+ 0 0 44 -4,-3.2 -3,-0.2 -5,-0.2 -2,-0.2 0.501 78.3 121.1-106.0 -6.1 9.1 4.9 7.5 70 70 A D < - 0 0 57 -4,-2.5 11,-0.9 -5,-0.3 8,-0.2 -0.390 51.0-152.1 -62.5 131.1 9.6 5.6 11.2 71 71 A R S S+ 0 0 156 9,-0.1 2,-0.4 -2,-0.1 -1,-0.2 0.732 79.4 49.5 -80.4 -22.3 11.2 9.0 11.6 72 72 A K + 0 0 165 5,-0.0 2,-0.3 10,-0.0 9,-0.1 -0.928 64.7 167.1-116.6 141.6 12.9 8.1 14.9 73 73 A A + 0 0 45 -2,-0.4 4,-0.1 1,-0.1 -6,-0.0 -0.979 15.8 179.1-149.9 160.3 15.0 5.0 15.7 74 74 A T S S+ 0 0 140 2,-0.3 3,-0.1 -2,-0.3 -1,-0.1 0.695 80.5 21.9-124.9 -59.3 17.3 3.8 18.4 75 75 A T S S+ 0 0 135 1,-0.3 2,-0.4 2,-0.0 -2,-0.0 0.875 130.3 22.3 -91.6 -45.0 18.8 0.3 17.9 76 76 A V S S- 0 0 53 -42,-0.0 -2,-0.3 -44,-0.0 -1,-0.3 -0.995 85.0-120.4-123.8 132.4 18.4 -0.2 14.2 77 77 A A - 0 0 58 -46,-0.6 2,-0.2 -2,-0.4 -5,-0.0 -0.373 20.7-140.0 -63.7 144.4 18.1 2.7 11.7 78 78 A T > - 0 0 12 -8,-0.2 4,-1.9 1,-0.1 5,-0.3 -0.644 25.8-111.8 -91.8 162.3 15.0 3.0 9.5 79 79 A C H > S+ 0 0 56 -12,-0.7 4,-1.8 -2,-0.2 -10,-0.2 0.938 120.4 42.9 -50.8 -47.9 15.3 4.1 5.8 80 80 A M H > S+ 0 0 31 -12,-2.4 4,-2.8 2,-0.2 5,-0.2 0.924 109.9 52.9 -68.3 -50.6 13.5 7.3 6.8 81 81 A S H > S+ 0 0 23 -11,-0.9 4,-1.0 1,-0.2 -1,-0.2 0.854 113.6 43.6 -62.5 -37.2 15.3 8.1 10.0 82 82 A C H X S+ 0 0 30 -4,-1.9 4,-2.0 2,-0.2 -1,-0.2 0.919 114.4 49.6 -70.7 -41.8 18.8 7.9 8.4 83 83 A H H X S+ 0 0 31 -4,-1.8 4,-3.0 -5,-0.3 5,-0.3 0.831 106.5 55.9 -67.1 -35.5 17.7 9.9 5.3 84 84 A L H X S+ 0 0 38 -4,-2.8 4,-1.9 2,-0.2 -1,-0.2 0.851 109.6 47.2 -63.0 -35.4 16.2 12.6 7.5 85 85 A E H < S+ 0 0 162 -4,-1.0 -2,-0.2 -5,-0.2 -1,-0.2 0.884 115.4 44.9 -71.5 -39.1 19.5 12.9 9.2 86 86 A A H < S+ 0 0 54 -4,-2.0 -2,-0.2 1,-0.2 -3,-0.2 0.879 118.2 41.8 -72.7 -41.1 21.4 13.0 5.8 87 87 A A H >< S+ 0 0 3 -4,-3.0 3,-1.8 1,-0.2 7,-0.3 0.920 87.9 158.9 -70.6 -43.1 19.0 15.4 4.2 88 88 A G T 3< S- 0 0 38 -4,-1.9 -1,-0.2 -5,-0.3 -2,-0.1 -0.326 70.6 -19.5 59.5-131.1 18.8 17.5 7.4 89 89 A S T 3 S+ 0 0 125 -4,-0.1 2,-0.3 -3,-0.1 -1,-0.3 0.423 104.9 122.9 -89.1 -1.3 17.7 21.1 6.9 90 90 A D <> - 0 0 77 -3,-1.8 4,-2.0 1,-0.1 5,-0.2 -0.482 55.1-149.0 -73.4 128.0 18.5 20.9 3.2 91 91 A K H > S+ 0 0 170 -2,-0.3 4,-1.3 2,-0.2 -1,-0.1 0.909 92.9 38.4 -60.5 -54.8 15.7 21.6 0.7 92 92 A D H > S+ 0 0 109 2,-0.2 4,-2.7 1,-0.2 5,-0.2 0.844 115.5 52.8 -70.8 -36.4 16.6 19.4 -2.3 93 93 A L H >>S+ 0 0 60 2,-0.2 4,-3.5 -6,-0.2 5,-0.6 0.878 105.6 54.0 -66.8 -39.7 17.9 16.5 -0.2 94 94 A K H X>S+ 0 0 97 -4,-2.0 4,-1.8 -7,-0.3 5,-1.3 0.907 111.9 47.6 -57.3 -40.7 14.6 16.5 1.8 95 95 A K H <5S+ 0 0 120 -4,-1.3 4,-0.4 3,-0.2 -2,-0.2 0.932 120.3 34.7 -65.1 -50.6 12.9 16.2 -1.6 96 96 A E H <5S+ 0 0 68 -4,-2.7 8,-2.6 7,-0.2 9,-0.5 0.864 131.5 28.7 -75.7 -35.9 15.2 13.4 -3.0 97 97 A L H <5S+ 0 0 44 -4,-3.5 -3,-0.2 -5,-0.2 -2,-0.2 0.784 131.5 22.8-101.5 -29.1 15.7 11.5 0.2 98 98 A T T <