==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=15-MAR-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 01-OCT-11 4A3N . COMPND 2 MOLECULE: TRANSCRIPTION FACTOR SOX-17; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR N.GAO,H.GAO,H.QIAN,S.SI,Y.XIE . 64 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5197.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 78.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 40 62.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 70 A R 0 0 252 0, 0.0 3,-0.1 0, 0.0 55,-0.1 0.000 360.0 360.0 360.0 38.3 19.1 5.8 20.8 2 71 A P - 0 0 50 0, 0.0 2,-0.1 0, 0.0 50,-0.0 -0.233 360.0 -91.6 -70.3 158.6 16.7 3.0 21.9 3 72 A M - 0 0 76 1,-0.1 53,-0.1 4,-0.1 2,-0.1 -0.387 39.3-130.9 -68.1 146.4 13.4 2.4 20.0 4 73 A N > - 0 0 78 -3,-0.1 4,-2.8 -2,-0.1 5,-0.2 -0.340 37.9 -85.1 -87.6 178.6 10.3 4.2 21.3 5 74 A A H > S+ 0 0 17 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.880 129.2 49.8 -51.7 -46.5 7.0 2.5 22.0 6 75 A F H > S+ 0 0 55 2,-0.2 4,-3.3 1,-0.2 -1,-0.2 0.930 111.4 47.1 -60.5 -48.6 5.9 2.8 18.4 7 76 A M H > S+ 0 0 77 2,-0.2 4,-2.6 1,-0.2 -2,-0.2 0.926 111.8 52.0 -60.6 -45.9 9.1 1.3 17.0 8 77 A V H X S+ 0 0 16 -4,-2.8 4,-0.5 1,-0.2 -1,-0.2 0.954 115.9 39.8 -55.1 -51.5 9.0 -1.5 19.5 9 78 A W H >X S+ 0 0 19 -4,-2.7 4,-1.3 -5,-0.2 3,-0.7 0.868 114.9 53.4 -66.5 -37.0 5.4 -2.3 18.5 10 79 A A H 3X S+ 0 0 0 -4,-3.3 4,-3.5 1,-0.2 5,-0.3 0.865 89.1 76.2 -67.6 -37.5 6.0 -1.8 14.8 11 80 A K H 3X S+ 0 0 99 -4,-2.6 4,-0.9 1,-0.2 -1,-0.2 0.792 107.7 32.9 -43.1 -37.8 9.0 -4.2 14.6 12 81 A D H X S+ 0 0 82 -4,-3.5 4,-3.0 2,-0.2 3,-0.7 0.947 106.6 48.7 -70.6 -50.1 6.0 -4.6 10.0 15 84 A K H 3X S+ 0 0 92 -4,-0.9 4,-2.7 -5,-0.3 -2,-0.2 0.876 108.8 54.5 -58.2 -39.8 7.4 -8.1 9.3 16 85 A R H 3< S+ 0 0 131 -4,-1.7 -1,-0.3 1,-0.2 -2,-0.2 0.781 115.9 38.6 -65.3 -28.0 4.0 -9.6 9.3 17 86 A L H XX S+ 0 0 24 -4,-0.9 4,-1.2 -3,-0.7 3,-0.7 0.813 120.0 44.2 -90.4 -36.6 2.9 -7.1 6.6 18 87 A A H 3< S+ 0 0 46 -4,-3.0 -2,-0.2 1,-0.2 -3,-0.2 0.803 107.9 57.2 -78.4 -32.8 6.1 -7.1 4.6 19 88 A Q T 3< S+ 0 0 156 -4,-2.7 -1,-0.2 -5,-0.3 -3,-0.1 0.093 117.1 38.3 -85.3 23.3 6.6 -10.9 4.7 20 89 A Q T <4 S+ 0 0 133 -3,-0.7 -2,-0.2 4,-0.1 -1,-0.2 0.469 115.2 46.8-140.4 -26.6 3.1 -11.1 3.1 21 90 A N >< + 0 0 59 -4,-1.2 3,-1.1 1,-0.1 -2,-0.1 -0.742 52.2 171.9-129.2 84.6 2.9 -8.3 0.6 22 91 A P T 3 S+ 0 0 125 0, 0.0 -1,-0.1 0, 0.0 -4,-0.1 0.755 85.7 52.0 -59.6 -27.8 6.0 -8.1 -1.6 23 92 A D T 3 S+ 0 0 119 -3,-0.1 2,-0.7 2,-0.1 -5,-0.1 0.630 82.0 104.9 -85.8 -17.8 4.3 -5.5 -3.7 24 93 A L S < S- 0 0 36 -3,-1.1 -3,-0.1 -7,-0.2 -4,-0.1 -0.568 74.4-128.8 -72.0 111.8 3.3 -3.3 -0.7 25 94 A H > - 0 0 146 -2,-0.7 4,-1.8 1,-0.1 5,-0.1 -0.204 8.7-125.0 -59.2 148.1 5.7 -0.3 -0.9 26 95 A N H > S+ 0 0 119 2,-0.2 4,-2.7 1,-0.2 5,-0.2 0.887 107.9 57.4 -62.1 -44.6 7.6 0.7 2.3 27 96 A A H > S+ 0 0 82 1,-0.2 4,-1.6 2,-0.2 -1,-0.2 0.913 111.7 42.9 -53.6 -46.4 6.4 4.3 2.3 28 97 A E H > S+ 0 0 81 2,-0.2 4,-2.7 1,-0.2 -1,-0.2 0.841 109.4 58.3 -68.1 -35.4 2.8 3.0 2.5 29 98 A L H X S+ 0 0 2 -4,-1.8 4,-2.4 1,-0.2 -2,-0.2 0.934 107.9 46.4 -59.2 -46.5 3.8 0.4 5.0 30 99 A S H X S+ 0 0 69 -4,-2.7 4,-2.6 1,-0.2 -1,-0.2 0.849 111.5 52.9 -63.6 -37.5 5.0 3.1 7.3 31 100 A K H X S+ 0 0 113 -4,-1.6 4,-1.9 -5,-0.2 -2,-0.2 0.913 109.9 45.9 -67.6 -44.0 1.9 5.1 6.7 32 101 A M H X S+ 0 0 65 -4,-2.7 4,-2.8 2,-0.2 5,-0.2 0.938 114.8 48.9 -62.8 -47.1 -0.4 2.2 7.6 33 102 A L H X S+ 0 0 3 -4,-2.4 4,-2.3 -5,-0.2 5,-0.2 0.924 107.7 55.1 -58.8 -44.9 1.7 1.5 10.7 34 103 A G H X S+ 0 0 34 -4,-2.6 4,-1.4 1,-0.2 -1,-0.2 0.903 113.9 40.8 -55.2 -44.0 1.6 5.2 11.7 35 104 A K H X S+ 0 0 137 -4,-1.9 4,-2.2 2,-0.2 -1,-0.2 0.844 111.1 53.3 -76.4 -37.3 -2.2 5.2 11.6 36 105 A S H X S+ 0 0 65 -4,-2.8 4,-1.0 2,-0.2 -2,-0.2 0.915 109.6 50.7 -64.8 -39.6 -2.9 1.8 13.2 37 106 A W H >< S+ 0 0 36 -4,-2.3 3,-0.8 -5,-0.2 -1,-0.2 0.925 109.3 51.9 -60.6 -44.9 -0.7 2.9 16.1 38 107 A K H 3< S+ 0 0 174 -4,-1.4 -1,-0.2 1,-0.3 -2,-0.2 0.893 105.2 54.5 -59.4 -43.7 -2.7 6.1 16.4 39 108 A A H 3< S+ 0 0 81 -4,-2.2 -1,-0.3 2,-0.0 -2,-0.2 0.740 91.3 99.1 -65.0 -22.5 -6.0 4.3 16.5 40 109 A L S << S- 0 0 43 -4,-1.0 2,-0.2 -3,-0.8 -3,-0.0 -0.310 71.8-128.3 -68.8 149.2 -4.7 2.2 19.4 41 110 A T >> - 0 0 78 1,-0.1 4,-1.9 -2,-0.0 3,-1.1 -0.577 26.4-108.4 -90.9 159.9 -5.7 3.0 23.0 42 111 A L H 3> S+ 0 0 101 1,-0.3 4,-2.7 2,-0.2 7,-0.2 0.876 120.0 60.0 -52.3 -42.0 -3.1 3.4 25.8 43 112 A A H 34 S+ 0 0 83 1,-0.2 -1,-0.3 2,-0.2 -3,-0.0 0.799 109.2 42.4 -58.7 -31.8 -4.4 0.1 27.3 44 113 A E H <4 S+ 0 0 102 -3,-1.1 -1,-0.2 1,-0.1 4,-0.2 0.758 119.0 44.5 -85.4 -27.2 -3.4 -1.6 24.0 45 114 A K H >X S+ 0 0 43 -4,-1.9 4,-2.3 1,-0.2 3,-1.2 0.710 86.8 96.6 -89.5 -18.5 -0.1 0.2 23.7 46 115 A R H 3X S+ 0 0 113 -4,-2.7 4,-2.7 1,-0.3 5,-0.2 0.807 81.0 48.8 -38.9 -55.4 0.9 -0.1 27.4 47 116 A P H 3> S+ 0 0 78 0, 0.0 4,-1.9 0, 0.0 -1,-0.3 0.849 114.1 46.4 -60.0 -33.5 3.2 -3.2 27.0 48 117 A F H <> S+ 0 0 52 -3,-1.2 4,-1.9 -4,-0.2 -2,-0.2 0.826 111.9 53.1 -76.1 -32.2 5.1 -1.6 24.1 49 118 A V H X S+ 0 0 31 -4,-2.3 4,-1.7 2,-0.2 -1,-0.2 0.896 109.4 47.5 -67.5 -41.0 5.3 1.5 26.2 50 119 A E H X S+ 0 0 83 -4,-2.7 4,-2.6 -5,-0.2 -2,-0.2 0.897 110.0 52.8 -68.1 -39.3 6.7 -0.4 29.2 51 120 A E H X S+ 0 0 58 -4,-1.9 4,-2.8 2,-0.2 -1,-0.2 0.909 107.9 50.6 -62.7 -42.4 9.3 -2.1 26.9 52 121 A A H X S+ 0 0 14 -4,-1.9 4,-2.2 1,-0.2 -1,-0.2 0.884 110.6 50.3 -64.6 -35.7 10.4 1.2 25.5 53 122 A E H X S+ 0 0 94 -4,-1.7 4,-1.8 2,-0.2 -2,-0.2 0.923 109.9 50.4 -67.2 -40.4 10.8 2.4 29.1 54 123 A R H X S+ 0 0 134 -4,-2.6 4,-1.9 1,-0.2 3,-0.4 0.966 111.4 47.8 -59.6 -52.5 12.8 -0.7 30.0 55 124 A L H X S+ 0 0 43 -4,-2.8 4,-2.0 1,-0.2 -1,-0.2 0.873 108.8 54.5 -55.6 -41.3 15.1 -0.2 27.0 56 125 A R H X S+ 0 0 152 -4,-2.2 4,-2.4 1,-0.2 -1,-0.2 0.873 106.0 52.9 -62.9 -37.3 15.6 3.5 27.8 57 126 A V H X S+ 0 0 73 -4,-1.8 4,-1.3 -3,-0.4 -1,-0.2 0.941 108.5 49.2 -62.9 -48.8 16.8 2.6 31.3 58 127 A Q H <>S+ 0 0 75 -4,-1.9 5,-3.4 1,-0.2 -2,-0.2 0.890 112.3 48.6 -59.3 -41.4 19.4 0.2 30.0 59 128 A H H ><5S+ 0 0 64 -4,-2.0 3,-1.8 1,-0.2 -1,-0.2 0.917 110.3 50.2 -64.7 -45.8 20.7 2.8 27.6 60 129 A M H 3<5S+ 0 0 113 -4,-2.4 -1,-0.2 1,-0.3 -2,-0.2 0.703 108.7 53.3 -66.5 -20.5 20.9 5.5 30.3 61 130 A Q T 3<5S- 0 0 117 -4,-1.3 -1,-0.3 -5,-0.2 -2,-0.2 0.309 121.6-113.3 -94.1 6.4 22.8 3.0 32.4 62 131 A D T < 5 - 0 0 133 -3,-1.8 -3,-0.2 1,-0.2 -2,-0.1 0.783 58.0 -70.9 67.2 31.5 25.2 2.6 29.5 63 132 A H < 0 0 121 -5,-3.4 -1,-0.2 -6,-0.2 -4,-0.1 0.960 360.0 360.0 52.8 67.0 24.2 -1.1 28.8 64 133 A P 0 0 126 0, 0.0 -2,-0.0 0, 0.0 -6,-0.0 0.992 360.0 360.0 -67.0 360.0 25.7 -2.9 31.8