==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 10-FEB-98 1A43 . COMPND 2 MOLECULE: HIV-1 CAPSID; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR D.K.WORTHYLAKE,H.WANG,S.YOO,W.I.SUNDQUIST,C.P.HILL . 72 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5122.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 72.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 16.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 47.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 148 A T 0 0 151 0, 0.0 3,-0.4 0, 0.0 24,-0.1 0.000 360.0 360.0 360.0 94.5 26.8 40.0 -4.2 2 149 A S > + 0 0 60 1,-0.2 3,-0.6 22,-0.2 22,-0.0 -0.071 360.0 108.8 -99.0 29.6 24.5 40.1 -1.2 3 150 A I G > + 0 0 7 1,-0.2 3,-2.5 2,-0.2 -1,-0.2 0.849 64.1 70.3 -76.1 -31.1 24.3 36.3 -1.0 4 151 A L G 3 S+ 0 0 121 -3,-0.4 -1,-0.2 1,-0.3 -2,-0.1 0.708 93.5 60.3 -57.7 -18.8 26.4 36.2 2.2 5 152 A D G < S+ 0 0 136 -3,-0.6 2,-1.0 1,-0.1 -1,-0.3 0.391 78.0 97.6 -92.3 3.4 23.4 37.8 3.9 6 153 A I < + 0 0 20 -3,-2.5 2,-0.3 15,-0.0 -1,-0.1 -0.795 51.3 161.8 -96.3 95.2 21.0 34.9 3.2 7 154 A R - 0 0 156 -2,-1.0 2,-0.3 38,-0.0 40,-0.2 -0.886 42.6-110.2-114.2 144.8 21.0 32.8 6.3 8 155 A Q - 0 0 17 38,-2.7 6,-0.1 -2,-0.3 -2,-0.0 -0.570 40.4-114.3 -73.5 133.8 18.4 30.2 7.4 9 156 A G > - 0 0 17 -2,-0.3 3,-0.9 4,-0.1 39,-0.2 -0.175 25.6-105.3 -64.1 162.3 16.3 31.3 10.3 10 157 A P T 3 S+ 0 0 123 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.852 121.6 13.9 -56.7 -37.5 16.5 29.6 13.7 11 158 A K T 3 S+ 0 0 200 2,-0.1 -2,-0.1 37,-0.0 -3,-0.0 -0.030 97.2 132.0-127.1 25.8 13.1 27.9 13.1 12 159 A E < - 0 0 42 -3,-0.9 36,-0.2 1,-0.1 2,-0.1 -0.655 62.5-114.0 -82.8 133.6 12.8 28.7 9.4 13 160 A P >> - 0 0 75 0, 0.0 4,-1.8 0, 0.0 3,-0.6 -0.475 20.6-125.4 -66.6 137.7 11.8 25.7 7.2 14 161 A F H 3> S+ 0 0 5 57,-0.6 4,-2.0 1,-0.2 5,-0.1 0.843 109.1 63.1 -51.6 -36.3 14.6 24.6 4.8 15 162 A R H 3> S+ 0 0 133 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.932 105.6 42.7 -55.1 -51.0 12.2 25.0 1.9 16 163 A D H <> S+ 0 0 61 -3,-0.6 4,-1.8 1,-0.2 -1,-0.2 0.849 110.2 56.5 -65.4 -38.1 11.7 28.7 2.5 17 164 A Y H X S+ 0 0 0 -4,-1.8 4,-0.9 1,-0.2 -1,-0.2 0.883 106.6 52.4 -60.8 -36.2 15.4 29.3 3.1 18 165 A V H >X S+ 0 0 10 -4,-2.0 4,-2.4 2,-0.2 3,-0.5 0.913 106.0 51.0 -67.3 -45.4 15.9 27.7 -0.4 19 166 A D H 3X S+ 0 0 85 -4,-1.8 4,-1.5 1,-0.2 -1,-0.2 0.869 111.4 49.5 -60.6 -36.7 13.4 30.1 -2.2 20 167 A R H 3X S+ 0 0 88 -4,-1.8 4,-0.6 2,-0.2 -1,-0.2 0.712 110.9 51.0 -74.4 -22.3 15.2 33.0 -0.6 21 168 A F H S+ 0 0 6 -4,-1.2 5,-2.5 2,-0.2 -2,-0.2 0.872 105.8 51.1 -67.2 -38.6 20.8 34.3 -7.2 26 173 A R H ><5S+ 0 0 171 -4,-1.8 3,-3.4 3,-0.2 -2,-0.2 0.968 106.7 53.0 -61.5 -56.6 18.4 35.2 -10.1 27 174 A A H 3<5S+ 0 0 83 -4,-1.3 -1,-0.2 1,-0.3 -2,-0.2 0.866 112.6 44.7 -47.5 -43.2 18.4 38.9 -9.2 28 175 A E T 3<5S- 0 0 68 -4,-1.6 -1,-0.3 2,-0.0 -2,-0.2 0.301 115.3-123.6 -87.8 12.6 22.2 38.8 -9.4 29 176 A Q T < 5 - 0 0 174 -3,-3.4 2,-0.3 1,-0.2 -3,-0.2 0.897 35.8-170.8 46.0 56.1 21.9 36.8 -12.6 30 177 A A < - 0 0 27 -5,-2.5 -1,-0.2 1,-0.1 -5,-0.0 -0.591 21.3-123.8 -74.8 130.7 24.0 33.8 -11.5 31 178 A S > - 0 0 61 -2,-0.3 4,-2.1 1,-0.1 5,-0.1 -0.215 27.4-103.7 -66.4 169.1 24.7 31.5 -14.4 32 179 A Q H > S+ 0 0 124 1,-0.2 4,-1.4 2,-0.2 -1,-0.1 0.851 123.7 57.5 -64.8 -29.4 23.6 27.8 -14.0 33 180 A E H > S+ 0 0 135 2,-0.2 4,-1.2 1,-0.2 -1,-0.2 0.919 106.1 47.8 -66.1 -43.4 27.3 27.0 -13.4 34 181 A V H >> S+ 0 0 63 1,-0.2 4,-2.6 2,-0.2 3,-0.6 0.937 106.1 57.5 -63.6 -44.4 27.4 29.4 -10.4 35 182 A K H 3X S+ 0 0 59 -4,-2.1 4,-2.1 1,-0.3 -1,-0.2 0.849 103.4 54.7 -56.0 -33.5 24.2 28.0 -8.9 36 183 A N H 3X S+ 0 0 77 -4,-1.4 4,-1.6 1,-0.2 -1,-0.3 0.866 111.1 43.7 -68.2 -39.8 25.8 24.5 -8.8 37 184 A W H S+ 0 0 36 -4,-2.6 5,-2.7 2,-0.2 6,-0.4 0.856 107.9 52.7 -67.2 -35.1 26.7 27.8 -4.5 39 186 A T H <>S+ 0 0 17 -4,-2.1 5,-0.5 -5,-0.3 -2,-0.2 0.939 110.0 47.4 -65.6 -45.2 24.5 24.8 -3.8 40 187 A E H <5S+ 0 0 85 -4,-1.6 -1,-0.2 -5,-0.1 -2,-0.2 0.719 133.0 12.1 -67.1 -23.8 27.5 22.7 -2.9 41 188 A T T >X5S+ 0 0 65 -4,-1.2 4,-2.7 3,-0.1 3,-0.5 0.674 126.8 33.0-116.9 -83.6 28.8 25.4 -0.7 42 189 A L H 3>5S+ 0 0 22 -5,-0.3 4,-3.2 1,-0.2 -3,-0.2 0.797 115.3 56.3 -51.5 -42.6 27.0 28.6 0.5 43 190 A L H 34 - 0 0 25 -2,-0.2 4,-3.1 -39,-0.2 5,-0.3 -0.267 47.8 -97.2 -67.8 157.4 20.8 26.7 10.5 49 196 A P H > S+ 0 0 98 0, 0.0 4,-1.2 0, 0.0 5,-0.1 0.805 120.3 44.9 -39.2 -51.7 22.9 24.6 12.9 50 197 A D H > S+ 0 0 130 2,-0.2 4,-1.8 1,-0.2 3,-0.3 0.950 117.7 43.7 -65.7 -46.6 20.9 21.4 12.7 51 198 A a H > S+ 0 0 5 1,-0.2 4,-3.6 2,-0.2 5,-0.3 0.930 109.1 57.0 -64.3 -45.4 20.5 21.4 9.0 52 199 A K H X S+ 0 0 72 -4,-3.1 4,-1.9 1,-0.2 -1,-0.2 0.781 108.2 48.6 -56.3 -31.8 24.1 22.4 8.3 53 200 A T H X S+ 0 0 98 -4,-1.2 4,-1.4 -3,-0.3 -1,-0.2 0.900 113.8 46.0 -75.8 -41.5 25.2 19.3 10.3 54 201 A I H X S+ 0 0 69 -4,-1.8 4,-1.9 2,-0.2 3,-0.4 0.975 116.4 44.3 -63.8 -53.7 22.8 17.1 8.3 55 202 A L H X S+ 0 0 7 -4,-3.6 4,-0.7 1,-0.3 -2,-0.2 0.901 113.5 50.5 -57.2 -45.9 23.8 18.6 4.9 56 203 A K H < S+ 0 0 145 -4,-1.9 3,-0.4 -5,-0.3 -1,-0.3 0.807 110.1 52.7 -61.8 -29.8 27.5 18.4 5.9 57 204 A A H < S+ 0 0 79 -4,-1.4 -2,-0.2 -3,-0.4 -1,-0.2 0.848 96.2 67.9 -74.0 -35.0 26.8 14.8 6.8 58 205 A L H < S- 0 0 77 -4,-1.9 -1,-0.2 1,-0.1 -2,-0.2 0.691 105.4-123.6 -58.9 -23.8 25.3 14.1 3.3 59 206 A G >< - 0 0 32 -4,-0.7 3,-0.6 -3,-0.4 2,-0.3 0.095 35.9 -59.6 92.9 150.5 28.6 14.5 1.6 60 207 A P T 3 S+ 0 0 136 0, 0.0 -20,-0.1 0, 0.0 -19,-0.0 -0.516 118.2 40.7 -69.5 127.3 29.6 16.9 -1.2 61 208 A G T 3 + 0 0 53 1,-0.3 2,-0.3 -2,-0.3 -21,-0.0 0.716 68.8 141.5 112.3 23.5 27.4 16.2 -4.3 62 209 A A < - 0 0 14 -3,-0.6 -1,-0.3 -7,-0.1 2,-0.1 -0.702 51.5-112.8 -93.0 151.1 23.9 15.5 -3.1 63 210 A T >> - 0 0 79 -2,-0.3 4,-1.9 1,-0.1 3,-0.7 -0.380 26.0-106.5 -78.4 166.4 21.1 16.9 -5.2 64 211 A L H 3> S+ 0 0 61 1,-0.3 4,-1.9 2,-0.2 5,-0.1 0.819 120.2 53.9 -61.3 -33.4 18.8 19.7 -4.1 65 212 A E H 3> S+ 0 0 155 2,-0.2 4,-0.9 1,-0.2 -1,-0.3 0.763 107.9 50.6 -73.3 -26.7 15.9 17.3 -3.6 66 213 A E H <> S+ 0 0 102 -3,-0.7 4,-2.3 2,-0.2 -2,-0.2 0.855 109.2 51.3 -76.4 -36.3 18.0 15.1 -1.3 67 214 A M H X S+ 0 0 8 -4,-1.9 4,-1.0 1,-0.2 -2,-0.2 0.921 109.8 49.1 -64.8 -46.5 19.0 18.1 0.8 68 215 A M H < S+ 0 0 59 -4,-1.9 -1,-0.2 1,-0.2 -2,-0.2 0.805 111.4 50.7 -62.3 -32.5 15.4 19.2 1.3 69 216 A T H >< S+ 0 0 86 -4,-0.9 3,-1.2 1,-0.2 -2,-0.2 0.922 107.2 52.1 -72.3 -43.9 14.5 15.6 2.3 70 217 A A H 3< S+ 0 0 34 -4,-2.3 -2,-0.2 1,-0.3 -1,-0.2 0.662 120.0 35.3 -66.9 -18.6 17.3 15.4 4.9 71 218 A a T 3< 0 0 19 -4,-1.0 -57,-0.6 -5,-0.1 -1,-0.3 -0.075 360.0 360.0-126.5 31.4 16.2 18.7 6.5 72 219 A Q < 0 0 198 -3,-1.2 -1,-0.1 -59,-0.1 -2,-0.1 0.452 360.0 360.0 -72.1 360.0 12.4 18.6 6.2