==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/RNA 04-FEB-98 1A4T . COMPND 2 MOLECULE: BOXB RNA; . SOURCE 2 SYNTHETIC: YES; . AUTHOR Z.CAI,A.A.GORIN,R.FREDERICK,X.YE,W.HU,A.MAJUMDAR,A.KETTANI, . 19 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2540.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 17 89.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 5.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 15.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 13 68.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 B N 0 0 181 0, 0.0 2,-1.2 0, 0.0 3,-0.3 0.000 360.0 360.0 360.0 135.3 9.8 1.7 4.5 2 2 B A + 0 0 75 1,-0.2 4,-0.0 2,-0.1 0, 0.0 -0.686 360.0 126.0 -89.1 88.6 6.8 3.3 2.8 3 3 B K S > S+ 0 0 155 -2,-1.2 4,-2.4 3,-0.1 -1,-0.2 0.817 81.7 33.3 -99.1 -64.3 3.8 1.2 3.7 4 4 B T H > S+ 0 0 120 -3,-0.3 4,-2.7 2,-0.2 -2,-0.1 0.830 114.2 58.3 -64.6 -42.0 1.4 3.9 5.1 5 5 B R H > S+ 0 0 207 2,-0.2 4,-0.6 1,-0.2 -1,-0.2 0.922 116.5 34.8 -56.4 -49.7 2.6 6.8 2.8 6 6 B R H >> S+ 0 0 129 2,-0.1 4,-1.8 1,-0.1 3,-0.5 0.945 116.8 56.9 -65.7 -54.4 1.6 4.7 -0.4 7 7 B H H 3X S+ 0 0 99 -4,-2.4 4,-3.5 1,-0.2 5,-0.2 0.856 93.9 67.0 -42.9 -58.6 -1.5 3.1 1.5 8 8 B E H 3X S+ 0 0 132 -4,-2.7 4,-1.2 1,-0.2 -1,-0.2 0.791 113.4 28.2 -32.7 -60.7 -3.2 6.5 2.4 9 9 B R H X S+ 0 0 48 -4,-2.9 4,-1.2 2,-0.2 3,-0.6 0.871 113.5 43.0 -49.1 -48.3 -9.4 0.6 -3.0 15 15 B I H >X S+ 0 0 88 -4,-3.0 4,-2.1 1,-0.2 3,-0.6 0.976 111.3 54.2 -61.0 -60.1 -12.4 1.3 -0.7 16 16 B E H 3< S+ 0 0 137 -4,-2.2 -2,-0.2 -5,-0.2 -1,-0.2 0.536 103.2 58.4 -53.7 -13.3 -14.2 3.4 -3.5 17 17 B R H << S+ 0 0 176 -4,-1.0 -1,-0.2 -3,-0.6 -2,-0.2 0.944 112.9 37.6 -77.9 -54.9 -13.9 0.3 -5.9 18 18 B D H << 0 0 153 -4,-1.2 -2,-0.2 -3,-0.6 -3,-0.1 0.875 360.0 360.0 -58.9 -49.1 -15.8 -2.1 -3.5 19 19 B T < 0 0 150 -4,-2.1 -3,-0.0 -5,-0.1 -4,-0.0 -0.015 360.0 360.0 -37.3 360.0 -18.3 0.8 -2.4