==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 16-FEB-98 1A5J . COMPND 2 MOLECULE: B-MYB; . SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; . AUTHOR P.B.MCINTOSH,M.D.CARR,U.WOLLBORN,T.A.FRENKIEL,J.FEENEY, . 110 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 9318.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 66 60.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 7.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 40 36.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 2 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 120 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-152.7 -40.7 5.2 4.7 2 2 A I - 0 0 118 2,-0.1 4,-0.1 3,-0.0 3,-0.1 1.000 360.0-169.3 65.1 71.8 -38.3 7.6 6.5 3 3 A P - 0 0 103 0, 0.0 3,-0.5 0, 0.0 0, 0.0 0.155 35.3 -50.8 -75.0-163.3 -36.6 5.1 8.8 4 4 A D S S+ 0 0 133 1,-0.2 -2,-0.1 2,-0.1 4,-0.0 -0.162 118.6 47.8 -67.5 166.6 -34.3 5.9 11.7 5 5 A L S S+ 0 0 73 -3,-0.1 3,-0.3 4,-0.0 -1,-0.2 0.641 82.7 107.0 73.7 15.0 -31.3 8.2 11.3 6 6 A V + 0 0 44 -3,-0.5 -2,-0.1 1,-0.2 -1,-0.0 0.694 61.2 69.6 -93.5 -25.0 -33.7 10.6 9.6 7 7 A K S S+ 0 0 203 1,-0.3 -1,-0.2 0, 0.0 -3,-0.1 0.162 123.3 12.0 -78.5 20.1 -33.8 13.0 12.5 8 8 A G S S- 0 0 35 -3,-0.3 2,-0.5 2,-0.1 -1,-0.3 0.055 77.5-168.4 166.6 67.6 -30.3 13.8 11.5 9 9 A P - 0 0 92 0, 0.0 -3,-0.1 0, 0.0 -4,-0.0 -0.600 16.5-147.5 -75.0 119.8 -29.1 12.4 8.1 10 10 A W + 0 0 112 -2,-0.5 2,-0.2 -5,-0.2 -2,-0.1 -0.250 19.8 179.2 -79.0 171.9 -25.3 12.8 7.8 11 11 A T > - 0 0 74 -2,-0.0 4,-2.0 0, 0.0 5,-0.2 -0.759 51.0 -61.4-152.2-163.4 -23.6 13.4 4.5 12 12 A K H > S+ 0 0 166 -2,-0.2 4,-2.2 2,-0.2 5,-0.1 0.817 123.7 66.7 -62.3 -31.3 -20.2 14.0 2.9 13 13 A E H >> S+ 0 0 124 2,-0.2 3,-1.4 1,-0.2 4,-1.0 0.979 107.5 32.7 -51.6 -75.6 -19.9 17.1 5.1 14 14 A E H >> S+ 0 0 58 1,-0.3 4,-1.3 2,-0.2 3,-0.9 0.861 119.9 54.9 -50.3 -40.0 -19.7 15.4 8.5 15 15 A D H 3X S+ 0 0 68 -4,-2.0 4,-1.5 1,-0.3 -1,-0.3 0.798 98.4 63.7 -64.2 -29.1 -17.9 12.5 6.8 16 16 A Q H S+ 0 0 0 -4,-3.6 4,-3.9 1,-0.2 5,-0.9 0.844 115.5 44.2 -59.8 -34.6 -8.2 10.2 10.2 23 23 A K H <5S+ 0 0 123 -4,-1.5 -1,-0.2 2,-0.2 -2,-0.2 0.877 114.4 47.4 -76.5 -40.4 -5.6 12.3 8.4 24 24 A K H <5S+ 0 0 128 -4,-0.9 -2,-0.2 1,-0.1 -1,-0.2 0.644 124.0 36.7 -73.9 -15.2 -4.8 14.3 11.5 25 25 A Y H <5S- 0 0 95 -4,-1.6 -2,-0.2 4,-0.0 -3,-0.2 0.845 106.2-120.7-100.3 -52.6 -4.7 11.0 13.3 26 26 A G T <5 - 0 0 47 -4,-3.9 -3,-0.2 -5,-0.2 -4,-0.1 0.391 57.7 -75.6 120.6 5.1 -3.1 8.6 10.9 27 27 A T S > + 0 0 105 1,-0.2 3,-2.7 -7,-0.1 4,-0.6 -0.615 55.9 167.1 -95.8 73.4 -8.3 5.5 16.2 30 30 A W H 3> S+ 0 0 40 -2,-1.2 4,-1.7 1,-0.3 -1,-0.2 0.703 70.7 77.9 -58.2 -17.8 -11.1 4.3 13.9 31 31 A T H 3> S+ 0 0 90 1,-0.2 4,-3.5 2,-0.2 -1,-0.3 0.797 85.1 60.6 -61.3 -29.6 -13.1 4.9 17.1 32 32 A L H <> S+ 0 0 6 -3,-2.7 4,-3.1 2,-0.2 5,-0.3 0.965 100.9 51.4 -61.9 -55.2 -13.0 8.6 16.2 33 33 A I H X S+ 0 0 5 -4,-0.6 4,-4.8 2,-0.2 -2,-0.2 0.940 122.7 31.3 -45.4 -61.4 -14.8 8.1 12.9 34 34 A A H < S+ 0 0 17 -4,-1.7 -2,-0.2 2,-0.3 -1,-0.2 0.989 119.0 51.9 -61.6 -63.2 -17.6 6.1 14.5 35 35 A K H < S+ 0 0 152 -4,-3.5 3,-0.2 1,-0.2 -1,-0.2 0.778 120.2 40.9 -44.1 -28.8 -17.4 7.9 17.9 36 36 A H H < S+ 0 0 70 -4,-3.1 2,-1.1 -5,-0.3 -2,-0.3 0.945 121.1 38.2 -84.2 -60.0 -17.7 11.0 15.6 37 37 A L S < S+ 0 0 20 -4,-4.8 3,-0.3 -5,-0.3 -1,-0.3 -0.781 81.4 171.9 -97.9 92.2 -20.2 9.8 13.1 38 38 A K + 0 0 120 -2,-1.1 2,-1.5 -3,-0.2 -3,-0.1 0.104 47.4 69.9 -81.2-161.1 -22.7 7.8 15.1 39 39 A G S S+ 0 0 54 -30,-0.0 2,-0.2 1,-0.0 -1,-0.2 -0.257 109.0 31.4 82.3 -48.8 -26.1 6.5 13.9 40 40 A R S S- 0 0 186 -2,-1.5 2,-0.2 -3,-0.3 -1,-0.0 -0.595 103.9 -65.0-126.4-172.6 -24.3 3.9 11.8 41 41 A L - 0 0 155 -2,-0.2 -1,-0.1 1,-0.1 -3,-0.0 -0.524 31.7-138.3 -79.3 145.4 -21.1 1.9 11.7 42 42 A G S S+ 0 0 11 -2,-0.2 -8,-0.2 3,-0.0 -1,-0.1 0.228 80.6 90.7 -86.0 13.4 -17.8 3.8 11.5 43 43 A K + 0 0 133 2,-0.1 -3,-0.0 1,-0.1 0, 0.0 0.426 41.6 84.2 -80.8-138.8 -16.6 1.2 9.0 44 44 A Q S S+ 0 0 163 1,-0.2 -1,-0.1 2,-0.0 -3,-0.0 0.889 85.0 72.3 35.6 66.1 -17.0 1.3 5.3 45 45 A C > + 0 0 33 0, 0.0 4,-0.7 0, 0.0 5,-0.3 0.186 59.7 89.7-166.3 -44.1 -13.9 3.4 4.9 46 46 A R H >>S+ 0 0 104 1,-0.3 2,-3.3 2,-0.2 4,-3.0 0.785 74.5 82.1 -36.8 -35.2 -10.9 1.2 5.5 47 47 A E H 45S+ 0 0 142 1,-0.2 -1,-0.3 3,-0.2 0, 0.0 -0.279 101.2 31.3 -72.2 56.5 -11.2 0.6 1.8 48 48 A R H 45S+ 0 0 159 -2,-3.3 -1,-0.2 5,-0.0 -2,-0.2 0.146 124.4 37.9-174.7 -41.2 -9.3 3.8 1.2 49 49 A W H <5S+ 0 0 80 -4,-0.7 4,-0.3 -3,-0.3 3,-0.2 0.630 130.5 33.1 -98.8 -21.3 -6.8 4.4 4.1 50 50 A H T <5S+ 0 0 91 -4,-3.0 2,-0.7 -5,-0.3 -3,-0.2 0.707 120.1 51.2-102.8 -31.1 -6.0 0.7 4.3 51 51 A N S - 0 0 25 -7,-0.2 4,-0.8 -6,-0.2 -7,-0.1 -0.385 24.5 -87.5-124.3-158.3 8.7 -2.3 -7.7 64 64 A E H >> S+ 0 0 127 -9,-0.2 4,-2.3 2,-0.2 3,-1.7 0.949 120.5 34.3 -80.9 -82.0 7.3 -5.0 -5.5 65 65 A E H 3> S+ 0 0 129 1,-0.3 4,-2.6 2,-0.2 5,-0.2 0.776 119.4 58.5 -44.4 -29.7 6.4 -8.0 -7.6 66 66 A E H 3> S+ 0 0 27 2,-0.2 4,-1.8 1,-0.2 -1,-0.3 0.889 106.2 45.5 -68.7 -41.3 9.5 -6.9 -9.5 67 67 A D H < S+ 0 0 44 -4,-2.6 3,-1.9 1,-0.3 5,-0.2 0.905 114.8 40.9 -37.4 -65.7 10.5 -12.1 -9.0 70 70 A I H >X S+ 0 0 0 -4,-1.8 4,-2.1 1,-0.3 3,-1.6 0.902 115.4 51.8 -51.4 -45.5 14.2 -11.2 -9.1 71 71 A F H 3< S+ 0 0 105 -4,-2.9 -1,-0.3 1,-0.3 -2,-0.3 0.637 121.5 34.3 -66.7 -14.1 14.4 -12.3 -5.5 72 72 A E T << S+ 0 0 96 -3,-1.9 -1,-0.3 -4,-1.7 -2,-0.3 0.050 114.6 58.7-126.9 21.3 12.7 -15.5 -6.6 73 73 A A T X> S+ 0 0 2 -3,-1.6 4,-1.9 -5,-0.2 3,-1.8 0.632 93.2 61.0-117.9 -33.9 14.2 -15.8 -10.1 74 74 A H T 3< S+ 0 0 43 -4,-2.1 -3,-0.1 1,-0.3 -4,-0.1 0.645 105.9 52.4 -69.7 -14.6 17.9 -15.9 -9.2 75 75 A K T 34 S+ 0 0 167 -5,-0.2 -1,-0.3 1,-0.1 -2,-0.1 0.204 109.0 50.7-103.4 11.5 17.1 -19.0 -7.3 76 76 A V T <4 S- 0 0 99 -3,-1.8 -2,-0.2 2,-0.2 -1,-0.1 0.666 135.5 -7.4-114.7 -36.1 15.4 -20.5 -10.4 77 77 A L S < S- 0 0 83 -4,-1.9 2,-0.3 1,-0.2 -3,-0.2 0.587 91.1-122.1-123.9 -73.2 18.0 -20.0 -13.0 78 78 A G - 0 0 14 -5,-0.5 -1,-0.2 2,-0.0 -2,-0.2 -0.916 70.0 -10.9 161.8-131.6 21.0 -17.9 -11.9 79 79 A N S S+ 0 0 112 -2,-0.3 2,-3.3 1,-0.1 3,-0.4 0.038 82.2 135.3 -89.4 25.6 22.6 -14.7 -13.0 80 80 A R >> + 0 0 141 1,-0.2 4,-3.1 -7,-0.1 3,-2.8 -0.271 15.3 155.9 -72.2 55.9 20.5 -14.9 -16.1 81 81 A W H 3> + 0 0 29 -2,-3.3 4,-2.8 1,-0.3 5,-0.4 0.852 69.6 65.4 -50.9 -36.2 19.8 -11.2 -15.8 82 82 A A H 3> S+ 0 0 52 -3,-0.4 4,-0.7 1,-0.2 -1,-0.3 0.798 113.1 32.6 -56.5 -29.1 19.1 -11.4 -19.5 83 83 A E H <> S+ 0 0 82 -3,-2.8 4,-1.2 2,-0.2 -2,-0.3 0.812 110.5 63.4 -94.6 -39.6 16.2 -13.6 -18.5 84 84 A I H >X S+ 0 0 0 -4,-3.1 4,-1.0 1,-0.2 3,-0.7 0.914 111.1 40.1 -50.2 -48.6 15.4 -12.0 -15.2 85 85 A A H 3< S+ 0 0 7 -4,-2.8 3,-0.3 1,-0.2 -1,-0.2 0.920 101.2 70.6 -67.1 -45.5 14.5 -8.8 -17.1 86 86 A K H 3< S+ 0 0 153 -4,-0.7 -1,-0.2 -5,-0.4 -2,-0.2 0.772 100.4 52.0 -41.5 -28.8 12.8 -10.8 -19.9 87 87 A L H << S+ 0 0 101 -4,-1.2 -1,-0.3 -3,-0.7 -2,-0.2 0.945 110.8 46.4 -74.3 -51.7 10.3 -11.4 -17.2 88 88 A L S >< S- 0 0 11 -4,-1.0 3,-0.6 -3,-0.3 2,-0.4 -0.856 85.8-141.6 -98.8 111.2 9.8 -7.8 -16.2 89 89 A P T 3 S+ 0 0 122 0, 0.0 3,-0.1 0, 0.0 -3,-0.1 -0.585 81.4 39.9 -75.0 124.6 9.4 -5.6 -19.3 90 90 A G T 3 S+ 0 0 79 1,-0.6 2,-0.2 -2,-0.4 -4,-0.1 -0.324 96.8 77.0 136.8 -51.4 11.2 -2.2 -19.0 91 91 A R < - 0 0 106 -3,-0.6 -1,-0.6 -6,-0.2 2,-0.1 -0.499 66.7-141.2 -89.2 160.1 14.4 -3.1 -17.2 92 92 A T > - 0 0 80 -2,-0.2 4,-1.9 -3,-0.1 5,-0.2 -0.329 30.9 -94.9-107.2-169.8 17.5 -4.6 -18.8 93 93 A D H > S+ 0 0 78 1,-0.2 4,-2.9 2,-0.2 5,-0.3 0.909 125.2 53.7 -74.2 -44.8 20.0 -7.2 -17.8 94 94 A N H > S+ 0 0 99 1,-0.2 4,-0.9 2,-0.2 -1,-0.2 0.649 109.8 55.0 -63.7 -14.0 22.5 -4.6 -16.6 95 95 A A H > S+ 0 0 17 2,-0.2 4,-3.3 3,-0.1 -2,-0.2 0.965 113.4 33.3 -81.3 -66.3 19.5 -3.4 -14.5 96 96 A V H X S+ 0 0 0 -4,-1.9 4,-1.4 2,-0.2 6,-0.3 0.938 116.4 58.8 -54.9 -51.2 18.5 -6.5 -12.6 97 97 A K H >X S+ 0 0 89 -4,-2.9 3,-1.3 1,-0.3 4,-0.9 0.921 113.3 37.4 -42.2 -59.7 22.1 -7.6 -12.5 98 98 A N H >X S+ 0 0 95 -4,-0.9 4,-2.0 1,-0.3 3,-0.7 0.910 106.5 66.7 -60.3 -44.1 23.1 -4.5 -10.6 99 99 A H H 3X>S+ 0 0 2 -4,-3.3 5,-2.2 1,-0.3 4,-1.6 0.743 95.8 61.2 -48.7 -23.6 19.8 -4.6 -8.8 100 100 A W H <<5S+ 0 0 54 -4,-1.4 -1,-0.3 -3,-1.3 -2,-0.2 0.960 114.3 29.7 -68.5 -53.1 21.4 -7.7 -7.3 101 101 A N H <<5S+ 0 0 120 -4,-0.9 -2,-0.2 -3,-0.7 -1,-0.2 0.487 116.6 70.3 -83.4 -4.4 24.3 -5.8 -5.8 102 102 A S H <5S- 0 0 42 -4,-2.0 -2,-0.2 -6,-0.3 -3,-0.2 0.986 133.3 -40.2 -73.5 -77.2 22.0 -2.8 -5.5 103 103 A T T <5S+ 0 0 76 -4,-1.6 3,-0.2 -5,-0.0 -3,-0.2 0.365 130.7 74.9-132.3 -6.8 19.5 -3.7 -2.8 104 104 A I S + 0 0 157 -3,-0.2 2,-1.9 1,-0.2 3,-1.2 0.986 60.6 67.1 -68.6 -61.9 21.3 -9.1 1.3 107 107 A K T 3 S+ 0 0 184 1,-0.2 -1,-0.2 2,-0.1 -3,-0.0 -0.433 84.0 78.5 -64.5 86.1 22.3 -12.8 1.4 108 108 A V T 3 S+ 0 0 99 -2,-1.9 -1,-0.2 -3,-0.0 -2,-0.1 0.297 81.9 53.2-156.0 -46.8 26.0 -12.1 1.2 109 109 A D < 0 0 154 -3,-1.2 -2,-0.1 -4,-0.2 -3,-0.0 -0.091 360.0 360.0 -92.3 33.5 27.2 -11.1 4.7 110 110 A T 0 0 155 -4,-0.0 -3,-0.0 0, 0.0 -4,-0.0 -0.012 360.0 360.0 -42.4 360.0 25.6 -14.2 6.1