==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN/DNA 23-FEB-98 1A6B . COMPND 2 MOLECULE: DNA (5'-D(*AP*CP*GP*CP*C)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR W.SCHUELER,C.-Z.DONG,K.WECKER,B.P.ROQUES . 40 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3937.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 13 32.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 17.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 14 B G 0 0 106 0, 0.0 2,-1.9 0, 0.0 3,-0.2 0.000 360.0 360.0 360.0 66.3 20.0 1.8 -7.5 2 15 B E > + 0 0 105 1,-0.2 3,-0.7 3,-0.1 0, 0.0 -0.502 360.0 168.5 -80.3 77.1 18.5 -1.2 -5.7 3 16 B R T 3 S+ 0 0 233 -2,-1.9 -1,-0.2 1,-0.2 3,-0.2 0.812 75.7 65.5 -56.3 -33.7 17.3 -3.3 -8.7 4 17 B R T 3 S+ 0 0 242 1,-0.3 2,-1.9 -3,-0.2 3,-0.2 0.910 94.1 59.7 -55.4 -46.0 16.8 -6.1 -6.3 5 18 B R < + 0 0 104 -3,-0.7 -1,-0.3 1,-0.2 -3,-0.1 -0.545 68.5 159.4 -81.8 70.7 14.0 -4.0 -4.6 6 19 B S - 0 0 102 -2,-1.9 2,-0.2 -3,-0.2 -1,-0.2 0.790 67.0 -6.9 -63.4 -32.2 12.1 -3.9 -7.9 7 20 B Q S S+ 0 0 91 -3,-0.2 7,-0.1 1,-0.1 10,-0.0 -0.824 99.3 68.8-146.5-175.2 8.9 -3.1 -6.0 8 21 B L + 0 0 85 5,-0.3 -1,-0.1 -2,-0.2 6,-0.1 0.885 59.1 152.2 60.4 50.9 7.4 -2.7 -2.5 9 22 B D - 0 0 47 4,-0.1 -1,-0.1 -3,-0.1 8,-0.1 -0.034 62.1 -99.4 -80.1-166.6 9.3 0.4 -1.2 10 23 B R S S+ 0 0 205 1,-0.1 4,-0.1 12,-0.0 -1,-0.0 0.754 120.7 59.3 -87.3 -30.9 7.9 2.9 1.4 11 24 B D S S+ 0 0 137 2,-0.1 2,-0.1 11,-0.0 -1,-0.1 0.943 104.5 53.7 -54.7 -56.6 6.9 5.3 -1.4 12 25 B Q S S- 0 0 61 1,-0.1 11,-0.3 10,-0.1 2,-0.1 -0.337 100.0 -80.1 -89.8 162.0 4.5 2.8 -3.1 13 26 B C - 0 0 0 5,-0.4 -5,-0.3 8,-0.2 4,-0.2 -0.392 30.5-150.7 -61.8 130.3 1.5 0.6 -2.0 14 27 B A S S+ 0 0 40 2,-0.1 -1,-0.1 1,-0.1 -2,-0.0 0.819 91.3 46.5 -68.0 -36.1 2.6 -2.6 -0.2 15 28 B Y S S- 0 0 121 3,-0.1 -1,-0.1 1,-0.1 -2,-0.0 0.941 138.9 -8.2 -76.3 -55.1 -0.4 -4.5 -1.3 16 29 B C S S- 0 0 32 2,-0.1 -2,-0.1 13,-0.0 -1,-0.1 0.468 77.8-135.3-130.3 -15.5 -0.8 -3.8 -5.0 17 30 B K + 0 0 71 -4,-0.2 2,-0.3 1,-0.2 -3,-0.1 0.933 51.4 149.9 50.4 58.9 1.7 -1.0 -5.8 18 31 B E > - 0 0 72 3,-0.0 3,-0.5 0, 0.0 -5,-0.4 -0.832 51.7 -40.0-119.3 157.2 -0.7 1.1 -7.9 19 32 B K T 3 S- 0 0 159 -2,-0.3 -6,-0.1 1,-0.2 0, 0.0 0.138 101.5 -45.4 29.8-117.4 -1.1 4.9 -8.5 20 33 B G T 3 S+ 0 0 77 -8,-0.1 -1,-0.2 2,-0.1 2,-0.1 0.182 103.7 97.1-137.4 13.6 -0.5 7.1 -5.5 21 34 B H < - 0 0 26 -3,-0.5 2,-0.3 1,-0.0 -8,-0.2 -0.175 61.3-136.3 -84.9-169.2 -2.4 5.5 -2.6 22 35 B W > - 0 0 113 -9,-0.1 3,-1.8 -10,-0.1 4,-0.3 -0.888 32.0 -91.4-141.8 172.6 -0.7 3.2 0.0 23 36 B A T 3 S+ 0 0 22 1,-0.3 3,-0.4 -2,-0.3 -10,-0.1 0.742 126.4 62.0 -61.9 -19.4 -1.4 -0.1 1.8 24 37 B K T 3 S+ 0 0 146 1,-0.2 -1,-0.3 7,-0.0 -11,-0.0 0.775 120.0 23.7 -64.3 -33.1 -3.0 2.2 4.5 25 38 B D S < S+ 0 0 115 -3,-1.8 -2,-0.2 0, 0.0 -1,-0.2 0.011 85.9 151.1-124.2 18.6 -5.6 3.3 1.9 26 39 B C - 0 0 1 -3,-0.4 5,-0.5 -4,-0.3 -3,-0.1 -0.429 32.2-162.0 -71.4 127.4 -5.5 0.4 -0.6 27 40 B P S S+ 0 0 83 0, 0.0 -1,-0.2 0, 0.0 4,-0.0 0.677 92.6 57.4 -77.9 -20.8 -8.9 -0.1 -2.5 28 41 B K S S+ 0 0 101 2,-0.1 -2,-0.1 3,-0.0 0, 0.0 0.918 95.3 75.0 -71.6 -47.2 -7.9 -3.7 -3.5 29 42 B K S S- 0 0 62 1,-0.1 2,-2.3 2,-0.1 -13,-0.0 -0.454 102.1-111.1 -62.7 134.7 -7.4 -4.5 0.2 30 43 B P + 0 0 88 0, 0.0 2,-1.3 0, 0.0 -1,-0.1 -0.421 52.5 159.5 -77.1 72.0 -10.9 -4.9 1.9 31 44 B R + 0 0 116 -2,-2.3 -2,-0.1 -5,-0.5 -3,-0.0 -0.472 18.6 173.4 -86.3 60.5 -10.7 -1.8 4.1 32 45 B G > - 0 0 26 -2,-1.3 2,-2.3 1,-0.1 3,-0.6 -0.603 37.3-130.3 -74.2 127.1 -14.5 -1.9 4.4 33 46 B P T 3 S+ 0 0 139 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.421 95.7 70.9 -79.5 66.2 -15.8 0.8 6.9 34 47 B R T 3 S- 0 0 148 -2,-2.3 3,-0.2 0, 0.0 -2,-0.0 0.138 124.8 -74.9-162.9 17.2 -18.0 -1.7 8.8 35 48 B G < - 0 0 43 -3,-0.6 2,-1.4 1,-0.1 5,-0.1 0.966 48.8-158.7 67.8 82.3 -15.4 -4.0 10.6 36 49 B P + 0 0 62 0, 0.0 -1,-0.1 0, 0.0 -4,-0.1 -0.359 31.8 165.7 -89.5 51.8 -14.2 -6.0 7.6 37 50 B R > - 0 0 153 -2,-1.4 2,-2.4 3,-0.9 3,-1.2 -0.285 55.1 -98.8 -74.3 156.0 -13.0 -8.8 10.0 38 51 B P T 3 S+ 0 0 145 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.470 123.1 47.8 -72.9 73.0 -12.1 -12.3 8.9 39 52 B Q T 3 0 0 156 -2,-2.4 -2,-0.0 0, 0.0 0, 0.0 0.055 360.0 360.0-179.4 -46.9 -15.6 -13.5 9.9 40 53 B T < 0 0 102 -3,-1.2 -3,-0.9 -5,-0.1 0, 0.0 -0.924 360.0 360.0-161.2 360.0 -17.9 -10.9 8.3