==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 02-MAR-98 1A6S . COMPND 2 MOLECULE: GAG POLYPROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ROUS SARCOMA VIRUS - PRAGUE C; . AUTHOR J.M.MCDONNELL,D.FUSHMAN,S.M.CAHILL,W.ZHOU,A.WOLVEN, . 87 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5285.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 78.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 18 20.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 39 44.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 9 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G >> 0 0 72 0, 0.0 4,-0.6 0, 0.0 3,-0.6 0.000 360.0 360.0 360.0 80.3 11.0 -7.3 10.4 2 2 A E H 3> + 0 0 167 1,-0.3 4,-1.9 2,-0.2 5,-0.1 0.586 360.0 60.3 -64.3 -9.1 9.3 -4.5 12.3 3 3 A A H 3>>S+ 0 0 48 2,-0.2 4,-5.8 3,-0.2 5,-0.6 0.857 83.2 74.0 -84.9 -40.9 9.3 -2.8 8.9 4 4 A V H <>5S+ 0 0 1 -3,-0.6 4,-0.9 1,-0.2 41,-0.4 0.808 115.3 27.1 -40.6 -34.9 7.3 -5.5 7.1 5 5 A I H X5S+ 0 0 62 -4,-0.6 4,-3.3 2,-0.2 5,-0.3 0.889 123.6 48.1 -93.4 -55.4 4.4 -3.9 9.1 6 6 A K H X>S+ 0 0 138 -4,-1.9 4,-4.8 2,-0.2 5,-0.6 0.884 115.3 49.7 -52.4 -42.1 5.6 -0.4 9.5 7 7 A V H X>S+ 0 0 44 -4,-5.8 4,-3.1 3,-0.3 5,-0.9 0.990 110.5 46.0 -60.3 -64.5 6.4 -0.4 5.8 8 8 A I H XS+ 0 0 34 -4,-4.8 4,-3.5 -5,-0.3 5,-1.3 0.952 119.7 55.7 -59.2 -53.1 4.0 3.7 6.8 11 11 A A H XXS+ 0 0 7 -4,-3.1 4,-2.4 -5,-0.6 5,-0.9 0.916 101.6 58.4 -44.1 -54.8 5.0 2.8 3.2 12 12 A C H XS+ 0 0 7 -4,-1.6 5,-2.0 -3,-0.2 4,-1.4 0.891 136.2 52.1 -93.7 -57.1 1.3 6.6 3.4 14 14 A T H <5S+ 0 0 52 -4,-3.5 -3,-0.3 3,-0.4 -2,-0.2 0.796 114.0 51.4 -49.8 -30.9 4.9 7.1 4.4 15 15 A Y H <<5 + 0 0 24 -4,-1.4 3,-1.4 -6,-0.1 -3,-0.4 0.299 65.5 155.6-164.8 -18.2 2.0 10.0 1.4 18 18 A K T 3 < + 0 0 146 -5,-2.0 -4,-0.1 1,-0.2 -7,-0.0 0.082 68.0 52.0 -27.7 96.9 4.8 10.6 3.9 19 19 A T T 3 S+ 0 0 142 1,-0.7 -1,-0.2 -3,-0.0 -5,-0.1 -0.257 83.9 81.2 165.7 -64.0 3.3 13.8 5.4 20 20 A S S < S- 0 0 41 -3,-1.4 -1,-0.7 -7,-0.1 -3,-0.1 -0.051 81.4-114.9 -62.3 170.4 -0.3 13.3 6.5 21 21 A P S S- 0 0 113 0, 0.0 -1,-0.1 0, 0.0 -8,-0.1 0.899 78.8 -58.5 -75.0 -43.7 -1.2 11.7 9.8 22 22 A S + 0 0 51 3,-0.1 5,-0.2 -9,-0.1 4,-0.1 0.202 69.2 157.4 159.2 59.8 -2.8 8.6 8.3 23 23 A K S S- 0 0 154 1,-0.2 -10,-0.0 2,-0.1 0, 0.0 0.883 99.6 -9.9 -65.6 -39.8 -5.8 9.4 6.0 24 24 A K S >>S+ 0 0 7 3,-0.1 4,-2.1 49,-0.1 5,-0.7 0.154 107.0 115.4-143.1 12.1 -5.3 6.1 4.3 25 25 A E H >5S+ 0 0 32 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.946 93.0 17.1 -48.0 -89.8 -2.0 5.0 5.8 26 26 A I H >5S+ 0 0 81 2,-0.2 4,-2.5 3,-0.2 5,-0.5 0.830 124.9 68.1 -54.5 -33.4 -2.9 1.9 7.7 27 27 A G H >>>S+ 0 0 31 2,-0.2 4,-3.4 1,-0.2 3,-1.1 0.964 110.5 25.5 -48.8 -82.0 -6.1 1.9 5.7 28 28 A A H 3X>S+ 0 0 2 -4,-2.1 4,-1.9 3,-0.3 5,-1.6 0.904 115.7 68.1 -50.5 -46.5 -4.7 1.0 2.2 29 29 A M H 3<<>XS+ 0 0 4 -5,-1.6 5,-3.0 -4,-0.4 3,-2.2 0.933 125.2 52.0 -68.4 -47.7 -2.9 -5.1 0.6 34 34 A Q G 3<5S+ 0 0 93 -4,-5.0 -1,-0.2 -6,-0.3 -3,-0.2 0.427 118.6 41.2 -68.9 3.0 -5.6 -6.9 2.5 35 35 A K G <45S+ 0 0 87 -3,-0.7 -1,-0.3 -7,-0.2 -2,-0.2 0.039 110.7 55.8-136.3 21.9 -7.8 -6.1 -0.4 36 36 A E T <45S- 0 0 7 -3,-2.2 -2,-0.2 21,-0.1 -3,-0.1 0.205 129.5 -77.7-137.0 8.6 -5.3 -6.8 -3.2 37 37 A G T <5S+ 0 0 56 -4,-0.5 -3,-0.2 20,-0.1 -4,-0.1 0.707 100.7 116.0 96.8 27.1 -4.3 -10.3 -2.4 38 38 A L > < + 0 0 25 -5,-3.0 3,-0.6 -8,-0.2 6,-0.1 -0.369 22.3 126.8-121.5 50.2 -2.0 -9.5 0.5 39 39 A L T 3 + 0 0 125 1,-0.2 -1,-0.1 -5,-0.1 -5,-0.1 0.157 49.1 93.3 -91.1 17.1 -3.9 -11.2 3.3 40 40 A M T 3 S- 0 0 163 1,-0.4 3,-0.3 -7,-0.1 -1,-0.2 0.261 100.8-103.4 -91.6 10.2 -0.7 -13.0 4.2 41 41 A S X - 0 0 58 -3,-0.6 3,-1.1 1,-0.2 -1,-0.4 -0.284 52.9 -51.9 94.1 177.8 0.2 -10.3 6.7 42 42 A P G > S+ 0 0 33 0, 0.0 3,-1.1 0, 0.0 4,-0.3 0.196 106.2 105.6 -75.0 18.4 2.6 -7.4 6.5 43 43 A S G > + 0 0 40 -3,-0.3 3,-3.4 1,-0.3 4,-0.3 0.737 49.8 90.8 -68.9 -23.2 5.2 -10.1 5.5 44 44 A D G X S+ 0 0 16 -3,-1.1 3,-1.7 1,-0.3 -1,-0.3 0.832 82.8 57.1 -39.2 -40.5 4.9 -8.8 2.0 45 45 A L G < S+ 0 0 45 -3,-1.1 -1,-0.3 -41,-0.4 -2,-0.2 0.834 87.1 75.8 -61.6 -33.4 7.8 -6.5 3.0 46 46 A Y G < S+ 0 0 133 -3,-3.4 -1,-0.3 -4,-0.3 -2,-0.2 0.543 95.5 63.6 -56.1 -4.5 9.7 -9.7 3.9 47 47 A S S X S- 0 0 53 -3,-1.7 3,-0.9 -4,-0.3 2,-0.3 -0.981 90.9-118.0-127.7 137.2 10.1 -9.9 0.1 48 48 A P T 3 S+ 0 0 127 0, 0.0 -2,-0.1 0, 0.0 -3,-0.1 -0.567 97.9 5.6 -75.0 128.9 11.9 -7.5 -2.2 49 49 A G T > S+ 0 0 60 -2,-0.3 3,-0.6 1,-0.1 -4,-0.1 0.918 79.8 146.1 65.6 46.0 9.6 -5.8 -4.7 50 50 A S T < + 0 0 20 -3,-0.9 4,-0.4 1,-0.2 -1,-0.1 0.173 53.4 81.7 -96.6 15.2 6.5 -7.3 -3.2 51 51 A W T 3> S+ 0 0 16 1,-0.2 4,-0.5 2,-0.2 -1,-0.2 0.433 74.6 74.2 -95.9 -3.5 4.5 -4.2 -4.2 52 52 A D H <> S+ 0 0 90 -3,-0.6 4,-1.6 2,-0.2 -1,-0.2 0.725 90.9 57.0 -79.2 -23.6 4.2 -5.6 -7.7 53 53 A P H > S+ 0 0 53 0, 0.0 4,-0.6 0, 0.0 -1,-0.2 0.830 105.5 48.7 -75.0 -34.5 1.6 -8.0 -6.4 54 54 A I H > S+ 0 0 0 -4,-0.4 4,-1.6 2,-0.2 5,-0.2 0.670 107.0 60.4 -77.2 -18.2 -0.6 -5.3 -5.0 55 55 A T H X S+ 0 0 36 -4,-0.5 4,-1.5 2,-0.2 -1,-0.2 0.955 109.1 37.6 -72.6 -53.5 -0.3 -3.5 -8.3 56 56 A A H X S+ 0 0 58 -4,-1.6 4,-1.4 2,-0.2 -1,-0.2 0.620 111.5 69.0 -72.6 -12.8 -1.8 -6.3 -10.4 57 57 A A H >X S+ 0 0 9 -4,-0.6 3,-1.1 2,-0.2 4,-1.0 0.999 104.5 33.6 -66.9 -71.8 -4.2 -6.8 -7.5 58 58 A L H >< S+ 0 0 5 -4,-1.6 3,-0.7 1,-0.3 6,-0.2 0.850 117.4 59.1 -52.4 -36.6 -6.2 -3.6 -7.7 59 59 A S H >< S+ 0 0 93 -4,-1.5 3,-0.5 1,-0.3 -1,-0.3 0.859 101.2 53.6 -60.8 -37.0 -5.7 -3.8 -11.4 60 60 A Q H << S+ 0 0 153 -4,-1.4 -1,-0.3 -3,-1.1 -2,-0.2 0.714 137.4 3.3 -70.0 -21.2 -7.5 -7.2 -11.3 61 61 A R T X< + 0 0 106 -4,-1.0 3,-2.0 -3,-0.7 4,-0.3 -0.296 67.1 160.2-164.4 66.2 -10.3 -5.5 -9.5 62 62 A A T < S+ 0 0 36 -3,-0.5 3,-0.4 1,-0.3 -3,-0.1 0.586 80.8 65.0 -67.3 -9.0 -9.8 -1.7 -9.2 63 63 A M T 3 S+ 0 0 158 1,-0.2 -1,-0.3 -5,-0.2 -4,-0.1 0.207 86.4 70.4 -97.2 12.9 -13.6 -1.7 -8.7 64 64 A I S < S+ 0 0 83 -3,-2.0 2,-0.3 -6,-0.2 -1,-0.2 0.519 92.5 65.8-102.7 -11.9 -13.2 -3.6 -5.4 65 65 A L + 0 0 16 -3,-0.4 7,-0.1 -4,-0.3 -33,-0.0 -0.823 46.0 149.5-112.5 151.9 -11.6 -0.7 -3.6 66 66 A G + 0 0 54 -2,-0.3 5,-0.1 5,-0.1 -3,-0.0 -0.174 22.8 126.1 179.7 73.1 -13.2 2.6 -2.7 67 67 A K S S+ 0 0 167 3,-0.2 4,-0.1 -43,-0.0 -40,-0.0 0.427 98.3 13.1-112.8 -7.4 -12.0 4.3 0.5 68 68 A S S S- 0 0 76 -44,-0.0 3,-0.1 0, 0.0 -44,-0.0 0.072 142.5 -47.9-155.9 24.3 -11.1 7.6 -1.2 69 69 A G S S- 0 0 61 1,-0.2 -4,-0.0 3,-0.1 0, 0.0 -0.415 99.6 -59.8 138.8 -59.3 -12.8 7.2 -4.6 70 70 A E S S+ 0 0 117 -6,-0.0 -3,-0.2 0, 0.0 -1,-0.2 -0.082 121.8 1.2-178.0 -65.3 -11.9 3.8 -6.0 71 71 A L S > S+ 0 0 33 -3,-0.1 4,-3.4 -5,-0.1 5,-0.2 0.290 99.0 102.5-124.7 1.5 -8.2 3.3 -6.4 72 72 A K H > S+ 0 0 146 1,-0.2 4,-1.5 2,-0.2 5,-0.1 0.905 84.1 50.5 -51.8 -46.1 -7.0 6.7 -5.1 73 73 A T H > S+ 0 0 7 1,-0.2 4,-1.7 2,-0.2 3,-0.3 0.915 110.7 48.3 -58.7 -46.0 -6.1 5.0 -1.9 74 74 A W H > S+ 0 0 56 1,-0.2 4,-4.5 2,-0.2 5,-0.4 0.946 101.4 65.1 -59.3 -50.3 -4.1 2.3 -3.8 75 75 A G H X S+ 0 0 19 -4,-3.4 4,-1.5 1,-0.3 5,-0.4 0.854 105.5 44.2 -37.9 -49.4 -2.4 5.1 -5.8 76 76 A L H X S+ 0 0 39 -4,-1.5 -60,-0.7 -3,-0.3 4,-0.6 0.892 120.5 41.6 -65.1 -41.1 -0.8 6.3 -2.6 77 77 A V H X S+ 0 0 0 -4,-1.7 4,-0.9 -3,-0.3 -2,-0.2 0.972 131.9 24.2 -69.5 -56.8 -0.0 2.7 -1.6 78 78 A L H >X S+ 0 0 0 -4,-4.5 3,-1.6 2,-0.2 4,-1.6 0.977 115.7 62.5 -71.9 -59.4 1.1 1.6 -5.1 79 79 A G H 3X S+ 0 0 28 -4,-1.5 4,-0.8 -5,-0.4 -3,-0.2 0.754 102.9 56.4 -36.2 -31.3 2.1 5.0 -6.4 80 80 A A H >X S+ 0 0 0 -4,-0.6 4,-1.9 -5,-0.4 3,-0.7 0.930 100.0 55.1 -69.3 -47.5 4.6 4.8 -3.6 81 81 A L H