==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 01-JUL-05 2A66 . COMPND 2 MOLECULE: 5'-D(*GP*TP*TP*CP*AP*AP*GP*GP*CP*CP*AP*G)-3'; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR I.H.SOLOMON,J.M.HAGER,R.SAFI,D.P.MCDONNELL,M.R.REDINBO, . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6679.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 53.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 8 8.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 28 29.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 84 A E 0 0 174 0, 0.0 9,-1.8 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 173.8 40.4 6.6 -13.8 2 85 A L B -A 9 0A 111 7,-0.2 7,-0.2 18,-0.0 6,-0.2 -0.820 360.0-105.8-105.6 141.5 41.2 3.3 -12.2 3 86 A C > - 0 0 5 5,-2.6 4,-1.7 -2,-0.4 16,-0.2 -0.415 23.8-139.7 -60.6 125.8 40.7 2.3 -8.6 4 87 A P T 4 S+ 0 0 51 0, 0.0 -1,-0.2 0, 0.0 15,-0.1 0.685 99.9 46.7 -63.7 -14.0 44.1 2.2 -6.9 5 88 A V T 4 S- 0 0 0 3,-0.1 42,-0.1 61,-0.0 14,-0.1 0.907 135.2 -1.5 -93.7 -50.5 43.1 -0.9 -5.1 6 89 A C T 4 S- 0 0 9 2,-0.1 43,-1.0 42,-0.1 44,-0.1 0.494 87.8-116.5-122.1 -8.6 41.5 -3.2 -7.7 7 90 A G < + 0 0 34 -4,-1.7 3,-0.1 1,-0.2 41,-0.0 0.390 67.1 136.3 88.4 -5.1 41.6 -1.3 -11.0 8 91 A D - 0 0 29 1,-0.2 -5,-2.6 -6,-0.2 -1,-0.2 -0.159 69.0 -65.2 -69.9 170.1 37.8 -1.1 -11.4 9 92 A K B -A 2 0A 169 -7,-0.2 12,-0.6 -3,-0.1 -7,-0.2 -0.367 52.4-125.0 -61.2 127.0 36.1 2.1 -12.5 10 93 A V E -B 20 0B 20 -9,-1.8 10,-0.3 10,-0.2 3,-0.1 -0.458 21.9-171.6 -70.5 144.0 36.4 4.9 -10.0 11 94 A S E - 0 0 64 8,-2.6 2,-0.3 1,-0.5 9,-0.1 0.452 57.7 -61.5-116.0 -5.0 33.0 6.4 -8.9 12 95 A G E S-B 19 0B 24 7,-0.8 7,-1.9 2,-0.1 -1,-0.5 -0.908 79.5 -35.3 149.7-175.4 34.3 9.4 -7.0 13 96 A Y E -B 18 0B 62 -2,-0.3 2,-0.4 5,-0.2 5,-0.3 -0.606 56.6-179.1 -76.4 135.2 36.4 10.3 -3.9 14 97 A H E > -B 17 0B 28 3,-3.4 3,-0.8 -2,-0.3 55,-0.1 -0.915 61.9 -25.1-141.7 111.7 35.9 7.7 -1.1 15 98 A Y T 3 S- 0 0 37 -2,-0.4 54,-2.7 1,-0.2 57,-0.1 0.911 135.5 -23.9 55.4 52.0 37.7 8.0 2.2 16 99 A G T 3 S+ 0 0 12 52,-0.2 2,-0.3 56,-0.1 -1,-0.2 0.073 129.3 21.7 109.1 -26.2 40.7 10.0 1.1 17 100 A L E < S-B 14 0B 32 -3,-0.8 -3,-3.4 -5,-0.1 2,-0.2 -0.980 91.5 -63.3-163.3 172.3 40.9 9.3 -2.6 18 101 A L E +B 13 0B 57 -2,-0.3 2,-0.3 -5,-0.3 -5,-0.2 -0.452 59.9 154.9 -66.1 130.6 39.3 8.2 -5.8 19 102 A T E -B 12 0B 0 -7,-1.9 -8,-2.6 -2,-0.2 -7,-0.8 -0.935 44.6 -90.9-148.5 169.6 38.1 4.5 -5.7 20 103 A C E > -B 10 0B 0 -10,-0.3 4,-1.5 -2,-0.3 -10,-0.2 -0.356 41.2-109.1 -78.7 166.5 35.6 2.2 -7.2 21 104 A E H > S+ 0 0 100 -12,-0.6 4,-2.3 1,-0.2 5,-0.2 0.886 116.3 54.6 -65.3 -39.5 32.1 1.8 -5.7 22 105 A S H > S+ 0 0 34 1,-0.2 4,-2.7 2,-0.2 -1,-0.2 0.917 108.2 47.9 -63.4 -42.7 32.8 -1.8 -4.5 23 106 A C H > S+ 0 0 0 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.845 109.3 54.1 -67.8 -31.4 36.0 -0.8 -2.6 24 107 A K H X S+ 0 0 52 -4,-1.5 4,-2.4 2,-0.2 -1,-0.2 0.951 112.0 44.5 -64.4 -47.4 34.2 2.1 -1.0 25 108 A G H X S+ 0 0 13 -4,-2.3 4,-2.8 1,-0.2 -2,-0.2 0.911 113.4 51.0 -61.8 -43.3 31.5 -0.3 0.2 26 109 A F H X S+ 0 0 9 -4,-2.7 4,-2.6 2,-0.2 -1,-0.2 0.903 111.4 46.0 -61.4 -46.4 34.1 -2.9 1.3 27 110 A F H X S+ 0 0 0 -4,-2.5 4,-2.8 2,-0.2 5,-0.3 0.926 114.1 49.1 -64.4 -44.8 36.1 -0.3 3.4 28 111 A K H X S+ 0 0 80 -4,-2.4 4,-2.7 -5,-0.2 5,-0.3 0.947 113.4 46.2 -58.1 -52.7 32.9 1.1 5.0 29 112 A R H X S+ 0 0 115 -4,-2.8 4,-1.6 2,-0.2 6,-0.3 0.937 115.1 48.2 -53.5 -53.4 31.7 -2.4 5.9 30 113 A T H <>S+ 0 0 1 -4,-2.6 5,-2.4 -5,-0.2 4,-0.3 0.956 117.4 37.6 -55.2 -59.7 35.1 -3.4 7.2 31 114 A V H ><5S+ 0 0 36 -4,-2.8 3,-1.0 1,-0.2 -1,-0.2 0.877 111.6 57.8 -65.8 -40.2 35.8 -0.3 9.4 32 115 A Q H 3<5S+ 0 0 87 -4,-2.7 -1,-0.2 -5,-0.3 -2,-0.2 0.886 118.6 31.3 -57.7 -40.4 32.2 0.2 10.7 33 116 A N T 3<5S- 0 0 93 -4,-1.6 -1,-0.2 -5,-0.3 -2,-0.2 0.192 106.2-118.3-105.2 14.5 32.1 -3.3 12.2 34 117 A N T < 5 - 0 0 101 -3,-1.0 -3,-0.2 -4,-0.3 -4,-0.1 0.885 43.5-166.7 50.9 42.9 35.8 -3.8 13.1 35 118 A K < - 0 0 80 -5,-2.4 2,-0.5 -6,-0.3 -1,-0.2 -0.368 7.5-156.3 -63.2 137.8 35.9 -6.7 10.7 36 119 A R - 0 0 204 -3,-0.1 2,-0.2 -2,-0.1 21,-0.1 -0.964 12.1-171.5-121.9 114.8 39.1 -8.8 11.1 37 120 A Y - 0 0 55 -2,-0.5 2,-0.4 19,-0.1 18,-0.0 -0.602 10.5-150.5-103.5 165.3 40.2 -10.9 8.1 38 121 A T - 0 0 123 -2,-0.2 2,-0.4 0, 0.0 19,-0.2 -0.990 11.0-138.6-139.0 126.7 42.9 -13.6 7.7 39 122 A C - 0 0 22 -2,-0.4 16,-0.1 1,-0.1 -2,-0.0 -0.682 4.4-161.8 -84.7 134.2 44.9 -14.4 4.6 40 123 A I S S+ 0 0 171 -2,-0.4 -1,-0.1 2,-0.1 15,-0.0 0.677 81.1 52.8 -86.6 -19.7 45.5 -18.1 3.9 41 124 A E S S- 0 0 112 1,-0.0 -2,-0.1 0, 0.0 14,-0.0 0.447 122.1 -63.0 -85.9-131.9 48.3 -17.2 1.5 42 125 A N - 0 0 116 0, 0.0 -2,-0.1 0, 0.0 -1,-0.0 -0.100 67.9-101.9-115.3 35.8 51.3 -15.1 2.5 43 126 A Q S S+ 0 0 118 1,-0.1 -4,-0.0 0, 0.0 -3,-0.0 0.837 106.9 88.6 49.4 39.7 49.5 -11.8 3.1 44 127 A N + 0 0 95 2,-0.1 -1,-0.1 17,-0.0 0, 0.0 0.064 52.1 155.9-150.3 25.1 50.6 -10.5 -0.3 45 128 A C - 0 0 40 1,-0.1 2,-0.3 10,-0.0 10,-0.0 -0.238 47.5-111.2 -58.3 144.4 47.8 -11.6 -2.6 46 129 A Q - 0 0 144 1,-0.0 2,-0.5 -40,-0.0 -1,-0.1 -0.619 30.2-145.0 -79.5 134.6 47.4 -9.6 -5.8 47 130 A I + 0 0 14 -2,-0.3 2,-0.3 -42,-0.1 3,-0.0 -0.889 31.9 146.2-107.1 129.7 44.2 -7.6 -6.0 48 131 A D >> - 0 0 48 -2,-0.5 4,-2.7 -41,-0.0 3,-1.4 -0.920 62.4 -85.6-148.3 172.3 42.3 -7.0 -9.2 49 132 A K T 34 S+ 0 0 116 -43,-1.0 4,-0.2 -2,-0.3 -42,-0.1 0.859 127.8 40.8 -51.4 -40.5 38.7 -6.7 -10.3 50 133 A T T 34 S+ 0 0 121 1,-0.1 -1,-0.3 -44,-0.1 -3,-0.0 0.507 124.6 35.5 -89.2 -4.2 38.2 -10.4 -10.6 51 134 A Q T X> S+ 0 0 88 -3,-1.4 3,-2.6 -45,-0.1 4,-0.8 0.538 83.1 96.3-122.2 -12.5 40.1 -11.4 -7.5 52 135 A R T 3< S+ 0 0 43 -4,-2.7 3,-0.2 1,-0.3 7,-0.2 0.780 87.7 54.1 -50.5 -28.5 39.4 -8.6 -4.9 53 136 A K T 34 S+ 0 0 181 -4,-0.2 -1,-0.3 -5,-0.2 -2,-0.1 0.649 94.5 71.2 -82.1 -15.1 36.6 -10.9 -3.5 54 137 A R T <4 S+ 0 0 213 -3,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.876 109.8 21.3 -70.4 -41.7 39.0 -13.8 -3.0 55 138 A C X + 0 0 16 -4,-0.8 4,-2.2 -3,-0.2 -1,-0.2 -0.777 55.6 179.1-134.7 95.1 41.0 -12.3 -0.1 56 139 A P H > S+ 0 0 45 0, 0.0 4,-3.2 0, 0.0 5,-0.2 0.853 84.3 63.1 -60.2 -31.9 39.4 -9.6 2.0 57 140 A Y H > S+ 0 0 44 1,-0.2 4,-2.2 2,-0.2 5,-0.2 0.969 110.3 35.8 -57.0 -56.1 42.5 -9.5 4.2 58 141 A C H > S+ 0 0 7 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.824 114.9 57.2 -68.7 -29.0 44.8 -8.5 1.4 59 142 A R H X S+ 0 0 16 -4,-2.2 4,-2.3 1,-0.2 -2,-0.2 0.959 110.7 44.1 -65.2 -45.5 42.1 -6.3 -0.1 60 143 A F H X S+ 0 0 31 -4,-3.2 4,-2.1 2,-0.2 -2,-0.2 0.868 110.4 54.2 -65.6 -38.2 41.9 -4.4 3.2 61 144 A Q H X S+ 0 0 70 -4,-2.2 4,-2.9 -5,-0.2 -1,-0.2 0.929 110.6 47.7 -61.4 -42.8 45.7 -4.2 3.5 62 145 A K H X S+ 0 0 65 -4,-2.3 4,-3.2 2,-0.2 5,-0.2 0.916 106.4 56.9 -64.8 -41.4 45.8 -2.6 0.1 63 146 A C H <>S+ 0 0 0 -4,-2.3 5,-2.5 1,-0.2 4,-0.5 0.924 113.6 40.2 -54.2 -45.8 43.0 -0.2 0.9 64 147 A L H ><5S+ 0 0 66 -4,-2.1 3,-1.1 3,-0.2 -2,-0.2 0.917 113.4 55.0 -69.3 -43.5 45.1 1.1 3.8 65 148 A S H 3<5S+ 0 0 102 -4,-2.9 -2,-0.2 1,-0.3 -1,-0.2 0.918 106.5 49.6 -55.7 -48.9 48.3 0.9 1.8 66 149 A V T 3<5S- 0 0 43 -4,-3.2 -1,-0.3 -5,-0.1 -2,-0.2 0.593 127.9 -94.1 -70.6 -10.5 47.0 3.1 -1.0 67 150 A G T < 5 + 0 0 31 -3,-1.1 -3,-0.2 -4,-0.5 -2,-0.1 0.546 62.6 160.6 114.4 5.1 45.8 5.7 1.5 68 151 A M < - 0 0 6 -5,-2.5 2,-0.5 -6,-0.2 -1,-0.2 -0.418 39.0-126.6 -62.8 133.8 42.1 5.1 2.4 69 152 A K > - 0 0 56 -54,-2.7 3,-1.5 1,-0.1 4,-0.3 -0.740 19.5-160.9 -96.7 123.9 41.4 6.8 5.7 70 153 A L G > S+ 0 0 84 -2,-0.5 3,-1.5 1,-0.3 -1,-0.1 0.838 94.4 63.7 -61.7 -33.3 39.9 5.2 8.8 71 154 A E G 3 S+ 0 0 112 1,-0.3 -1,-0.3 -56,-0.1 4,-0.1 0.626 90.6 65.6 -68.7 -13.7 39.0 8.7 10.1 72 155 A A G < S+ 0 0 9 -3,-1.5 2,-0.6 -57,-0.1 -1,-0.3 0.632 83.6 85.4 -82.3 -14.3 36.6 9.2 7.1 73 156 A V S < S- 0 0 21 -3,-1.5 2,-0.5 -4,-0.3 -45,-0.0 -0.799 87.5-127.5 -86.8 122.5 34.4 6.4 8.5 74 157 A R > - 0 0 78 -2,-0.6 3,-1.5 4,-0.2 -2,-0.1 -0.632 14.8-158.3 -83.6 121.7 32.1 8.0 11.0 75 158 A A T 3 S+ 0 0 109 -2,-0.5 -1,-0.1 1,-0.3 -4,-0.0 0.898 99.3 44.0 -58.8 -44.6 31.8 6.6 14.5 76 159 A D T 3 S- 0 0 104 1,-0.0 -1,-0.3 2,-0.0 -2,-0.1 0.244 106.9-128.8 -87.1 13.8 28.4 8.2 15.1 77 160 A R < - 0 0 189 -3,-1.5 -2,-0.1 1,-0.1 -1,-0.0 0.762 40.2-177.0 43.4 33.3 27.3 7.1 11.6 78 161 A M - 0 0 117 1,-0.1 2,-0.2 2,-0.0 -4,-0.2 -0.269 18.4-125.4 -59.1 144.8 26.2 10.7 11.0 79 162 A R - 0 0 217 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.564 53.5 -23.1 -96.0 158.2 24.5 11.2 7.6 80 163 A G S S+ 0 0 45 -2,-0.2 -2,-0.0 1,-0.1 2,-0.0 0.055 81.2 98.1 47.7-146.8 25.3 13.6 4.8 81 164 A G S S- 0 0 65 1,-0.1 2,-0.3 2,-0.0 -1,-0.1 -0.300 78.5 -79.4 66.2-147.5 27.2 16.9 5.2 82 165 A R - 0 0 211 -2,-0.0 -1,-0.1 0, 0.0 2,-0.0 -0.958 36.1-136.2-156.3 133.9 30.9 17.0 4.5 83 166 A N > - 0 0 52 -2,-0.3 3,-1.8 1,-0.1 -11,-0.1 -0.140 41.7 -83.7 -84.8-175.5 33.9 15.9 6.5 84 167 A K T 3 S+ 0 0 160 1,-0.3 4,-0.3 2,-0.1 -1,-0.1 0.542 123.0 65.7 -66.4 -7.7 37.3 17.6 7.2 85 168 A F T 3> S+ 0 0 18 1,-0.2 4,-2.3 2,-0.1 -1,-0.3 0.383 70.3 102.5 -94.9 3.0 38.7 16.2 3.9 86 169 A G H <> S+ 0 0 14 -3,-1.8 4,-1.5 1,-0.2 -1,-0.2 0.945 84.1 41.6 -49.8 -59.1 36.2 18.3 1.9 87 170 A P H > S+ 0 0 99 0, 0.0 4,-1.9 0, 0.0 -1,-0.2 0.901 109.7 59.7 -57.5 -42.9 38.8 21.0 0.9 88 171 A M H > S+ 0 0 93 -4,-0.3 4,-2.7 1,-0.2 3,-0.4 0.927 105.1 48.4 -50.9 -50.9 41.5 18.4 0.2 89 172 A Y H X S+ 0 0 37 -4,-2.3 4,-2.1 1,-0.2 -1,-0.2 0.870 107.8 55.7 -58.5 -38.1 39.3 16.8 -2.4 90 173 A K H X S+ 0 0 66 -4,-1.5 4,-1.6 -5,-0.2 -1,-0.2 0.857 110.5 45.9 -62.9 -35.1 38.7 20.2 -4.0 91 174 A R H X S+ 0 0 62 -4,-1.9 4,-1.8 -3,-0.4 -2,-0.2 0.914 109.9 51.9 -73.9 -45.3 42.5 20.6 -4.2 92 175 A D H < S+ 0 0 94 -4,-2.7 -2,-0.2 1,-0.2 -1,-0.2 0.855 108.8 53.4 -60.0 -35.0 43.1 17.1 -5.7 93 176 A R H < S+ 0 0 68 -4,-2.1 -1,-0.2 -5,-0.2 -2,-0.2 0.946 109.1 47.4 -65.5 -49.8 40.5 17.9 -8.3 94 177 A A H < 0 0 87 -4,-1.6 -2,-0.2 1,-0.2 -3,-0.1 0.983 360.0 360.0 -54.5 -69.1 42.1 21.1 -9.5 95 178 A L < 0 0 127 -4,-1.8 -1,-0.2 0, 0.0 -2,-0.2 0.872 360.0 360.0 -42.0 360.0 45.7 19.9 -9.8