==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 27-MAR-98 1A8O . COMPND 2 MOLECULE: HIV CAPSID; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR T.R.GAMBLE,S.YOO,F.F.VAJDOS,U.K.VON SCHWEDLER, . 70 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4742.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 62.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 12.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 44.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 151 A X 0 0 72 0, 0.0 17,-0.0 0, 0.0 21,-0.0 0.000 360.0 360.0 360.0 103.2 20.3 33.1 26.9 2 152 A D + 0 0 155 16,-0.1 2,-0.2 2,-0.0 16,-0.1 0.748 360.0 107.1 -76.8 -26.5 21.8 36.3 28.1 3 153 A I + 0 0 21 14,-0.1 2,-0.3 15,-0.1 11,-0.0 -0.363 41.1 166.7 -62.3 122.3 22.5 37.7 24.6 4 154 A R - 0 0 153 -2,-0.2 2,-0.3 38,-0.0 40,-0.2 -0.997 39.5-106.9-137.8 136.4 20.2 40.6 23.6 5 155 A Q - 0 0 15 38,-2.5 6,-0.1 -2,-0.3 -2,-0.0 -0.459 33.0-125.0 -68.3 127.0 20.6 42.9 20.7 6 156 A G > - 0 0 24 -2,-0.3 3,-1.2 4,-0.1 39,-0.2 -0.348 24.2-112.4 -66.9 151.0 21.7 46.4 21.6 7 157 A P T 3 S+ 0 0 97 0, 0.0 40,-0.1 0, 0.0 -1,-0.1 0.741 119.8 27.6 -56.9 -23.5 19.4 49.2 20.3 8 158 A K T 3 S+ 0 0 188 2,-0.1 -2,-0.1 3,-0.0 -3,-0.0 0.234 94.9 117.0-120.9 10.3 22.3 50.4 18.0 9 159 A E S < S- 0 0 39 -3,-1.2 36,-0.2 1,-0.1 5,-0.1 -0.677 72.1-112.8 -83.9 127.7 24.0 47.0 17.6 10 160 A P > - 0 0 51 0, 0.0 4,-1.7 0, 0.0 3,-0.5 -0.305 23.6-123.3 -58.1 140.9 24.1 45.6 14.0 11 161 A F H > S+ 0 0 4 57,-0.7 4,-2.7 1,-0.2 5,-0.1 0.873 109.7 55.9 -54.4 -42.3 22.0 42.5 13.6 12 162 A R H > S+ 0 0 143 58,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.866 106.3 50.9 -60.3 -37.9 24.9 40.4 12.3 13 163 A D H > S+ 0 0 81 -3,-0.5 4,-1.9 2,-0.2 -1,-0.2 0.892 111.5 47.4 -66.5 -40.8 27.0 41.2 15.4 14 164 A Y H X S+ 0 0 0 -4,-1.7 4,-2.9 2,-0.2 -2,-0.2 0.912 109.2 55.0 -65.5 -42.4 24.2 40.2 17.7 15 165 A V H X S+ 0 0 5 -4,-2.7 4,-2.7 1,-0.2 -2,-0.2 0.908 107.7 49.5 -58.0 -44.0 23.7 37.0 15.6 16 166 A D H X S+ 0 0 73 -4,-2.1 4,-1.5 2,-0.2 -1,-0.2 0.906 112.1 46.6 -64.4 -42.2 27.4 36.1 16.1 17 167 A R H X S+ 0 0 90 -4,-1.9 4,-1.8 2,-0.2 -2,-0.2 0.941 113.0 51.0 -64.1 -44.2 27.2 36.7 19.9 18 168 A F H X S+ 0 0 0 -4,-2.9 4,-1.7 1,-0.2 -2,-0.2 0.917 112.4 45.0 -57.3 -49.4 24.0 34.6 20.0 19 169 A Y H X S+ 0 0 41 -4,-2.7 4,-2.5 2,-0.2 -1,-0.2 0.731 105.4 61.2 -70.0 -23.7 25.5 31.7 18.1 20 170 A K H X S+ 0 0 148 -4,-1.5 4,-1.1 2,-0.2 -1,-0.2 0.935 109.5 42.5 -67.6 -42.9 28.7 31.9 20.2 21 171 A T H < S+ 0 0 54 -4,-1.8 4,-0.3 1,-0.2 -2,-0.2 0.856 113.6 53.0 -69.7 -34.7 26.5 31.1 23.2 22 172 A L H ><>S+ 0 0 11 -4,-1.7 3,-1.4 1,-0.2 5,-1.1 0.886 104.0 55.9 -68.8 -37.9 24.6 28.5 21.2 23 173 A R H ><5S+ 0 0 153 -4,-2.5 3,-2.0 1,-0.3 -1,-0.2 0.826 94.5 67.5 -62.9 -34.0 27.8 26.7 20.2 24 174 A A T 3<5S+ 0 0 61 -4,-1.1 -1,-0.3 1,-0.3 -2,-0.2 0.679 102.7 47.1 -60.7 -18.7 28.8 26.3 23.9 25 175 A E T < 5S- 0 0 145 -3,-1.4 -1,-0.3 -4,-0.3 -2,-0.2 0.334 105.9-128.6-104.2 4.4 25.8 23.9 24.2 26 176 A Q T < 5 - 0 0 157 -3,-2.0 -3,-0.2 1,-0.1 -2,-0.1 0.897 36.6-163.1 46.5 47.6 26.6 21.9 21.0 27 177 A A < - 0 0 18 -5,-1.1 -1,-0.1 1,-0.1 -5,-0.0 -0.313 10.9-125.6 -62.2 139.9 23.1 22.5 19.9 28 178 A S > - 0 0 64 -3,-0.1 4,-2.2 1,-0.1 5,-0.2 -0.181 32.6 -94.4 -75.5 177.9 21.8 20.2 17.1 29 179 A Q H > S+ 0 0 116 1,-0.2 4,-2.3 2,-0.2 5,-0.2 0.932 126.6 50.4 -61.4 -46.3 20.3 21.5 13.9 30 180 A E H > S+ 0 0 105 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.887 110.3 49.6 -59.1 -42.4 16.8 21.2 15.2 31 181 A V H > S+ 0 0 49 2,-0.2 4,-2.7 1,-0.2 -1,-0.2 0.901 109.5 52.0 -65.0 -40.0 17.7 23.1 18.4 32 182 A K H X S+ 0 0 69 -4,-2.2 4,-2.4 2,-0.2 -2,-0.2 0.912 109.4 50.2 -61.7 -42.9 19.3 25.8 16.3 33 183 A N H X S+ 0 0 64 -4,-2.3 4,-2.0 2,-0.2 -2,-0.2 0.920 111.5 47.7 -61.0 -45.6 16.1 26.2 14.3 34 184 A W H X S+ 0 0 138 -4,-2.3 4,-1.7 1,-0.2 5,-0.2 0.910 113.4 47.8 -61.8 -44.5 14.0 26.4 17.4 35 185 A X H <>S+ 0 0 36 -4,-2.7 5,-2.5 1,-0.2 6,-0.3 0.864 111.0 51.5 -65.5 -35.6 16.4 29.0 18.9 36 186 A T H <5S+ 0 0 9 -4,-2.4 5,-0.4 1,-0.2 -1,-0.2 0.867 112.0 46.2 -68.5 -39.0 16.4 31.0 15.7 37 187 A E H <5S+ 0 0 102 -4,-2.0 -1,-0.2 -5,-0.2 -2,-0.2 0.780 129.2 20.6 -72.5 -33.6 12.5 31.1 15.5 38 188 A T T >X5S+ 0 0 55 -4,-1.7 4,-3.1 -5,-0.2 3,-0.6 0.783 127.6 24.8-100.1 -89.7 12.2 32.0 19.2 39 189 A L H 3>5S+ 0 0 47 1,-0.2 4,-2.4 2,-0.2 -3,-0.2 0.803 117.1 57.2 -53.4 -39.6 15.0 33.6 21.3 40 190 A L H 34 - 0 0 11 -39,-0.2 4,-3.2 -36,-0.2 5,-0.2 -0.177 42.1 -94.7 -69.2 165.1 16.0 45.2 19.6 46 196 A P H > S+ 0 0 99 0, 0.0 4,-1.3 0, 0.0 -1,-0.1 0.880 122.0 46.7 -45.2 -50.9 12.7 47.1 19.1 47 197 A D H > S+ 0 0 113 1,-0.2 4,-1.1 2,-0.2 3,-0.3 0.969 120.3 35.6 -59.4 -58.0 13.4 48.1 15.5 48 198 A a H > S+ 0 0 7 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.847 108.9 64.7 -67.5 -35.8 14.5 44.7 14.2 49 199 A K H X S+ 0 0 80 -4,-3.2 4,-1.8 1,-0.2 -1,-0.2 0.863 102.1 48.9 -57.3 -40.3 12.1 42.6 16.4 50 200 A T H X S+ 0 0 104 -4,-1.3 4,-1.6 -3,-0.3 -1,-0.2 0.934 112.1 48.6 -65.5 -46.3 9.0 44.1 14.7 51 201 A I H < S+ 0 0 77 -4,-1.1 -2,-0.2 1,-0.2 -1,-0.2 0.911 111.3 50.4 -59.2 -45.3 10.5 43.4 11.2 52 202 A L H >< S+ 0 0 6 -4,-2.7 3,-1.2 1,-0.2 4,-0.4 0.842 107.7 51.3 -64.7 -38.2 11.4 39.8 12.2 53 203 A K H >< S+ 0 0 115 -4,-1.8 3,-1.2 1,-0.3 -1,-0.2 0.863 103.0 62.0 -67.4 -32.9 7.9 38.9 13.5 54 204 A A T 3< S+ 0 0 86 -4,-1.6 -1,-0.3 1,-0.2 -2,-0.2 0.328 88.4 73.0 -74.8 5.5 6.4 40.2 10.3 55 205 A L T < S- 0 0 69 -3,-1.2 -1,-0.2 1,-0.1 -2,-0.2 0.727 92.9-145.3 -90.5 -25.3 8.3 37.5 8.3 56 206 A G X - 0 0 39 -3,-1.2 3,-0.9 -4,-0.4 -1,-0.1 -0.160 37.8 -29.0 84.6 175.3 6.1 34.7 9.5 57 207 A P T 3 S+ 0 0 135 0, 0.0 3,-0.1 0, 0.0 -4,-0.0 -0.207 120.6 27.7 -65.3 153.0 7.0 31.1 10.3 58 208 A G T 3 S+ 0 0 61 1,-0.3 2,-0.2 0, 0.0 -2,-0.1 0.488 75.7 154.2 78.0 2.4 9.9 29.2 8.6 59 209 A A < - 0 0 17 -3,-0.9 -1,-0.3 -7,-0.1 2,-0.1 -0.462 40.3-128.4 -65.2 130.6 11.9 32.4 7.9 60 210 A T > - 0 0 61 -2,-0.2 4,-2.1 -3,-0.1 5,-0.2 -0.347 17.5-111.1 -79.0 162.7 15.6 31.5 7.6 61 211 A L H > S+ 0 0 28 1,-0.2 4,-2.9 2,-0.2 5,-0.2 0.876 121.3 55.8 -57.5 -38.0 18.4 33.1 9.5 62 212 A E H > S+ 0 0 112 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.915 106.9 47.2 -61.9 -45.0 19.5 34.5 6.1 63 213 A E H > S+ 0 0 105 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.858 112.9 50.8 -65.8 -33.6 16.1 36.1 5.5 64 214 A X H X S+ 0 0 8 -4,-2.1 4,-2.1 2,-0.2 -2,-0.2 0.931 111.2 47.0 -68.7 -46.2 16.3 37.5 9.1 65 215 A X H < S+ 0 0 43 -4,-2.9 4,-0.3 1,-0.2 -2,-0.2 0.886 112.9 49.5 -63.3 -38.2 19.8 38.9 8.5 66 216 A T H >< S+ 0 0 89 -4,-2.5 3,-0.9 1,-0.2 -1,-0.2 0.922 110.5 51.4 -66.2 -42.0 18.6 40.4 5.1 67 217 A A H 3< S+ 0 0 36 -4,-2.2 -2,-0.2 1,-0.2 -1,-0.2 0.872 119.6 33.2 -63.3 -39.9 15.6 42.0 6.8 68 218 A a T 3< S+ 0 0 19 -4,-2.1 -57,-0.7 -5,-0.1 -1,-0.2 0.159 85.2 141.7-106.0 19.9 17.6 43.7 9.6 69 219 A Q < 0 0 145 -3,-0.9 -3,-0.1 -4,-0.3 -4,-0.0 -0.221 360.0 360.0 -63.1 148.6 20.8 44.5 7.8 70 220 A G 0 0 123 0, 0.0 -58,-0.2 0, 0.0 -59,-0.1 -0.934 360.0 360.0 152.9 360.0 22.5 47.8 8.5