==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING 28-OCT-95 1AAB . COMPND 2 MOLECULE: HIGH MOBILITY GROUP PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR C.H.HARDMAN,R.W.BROADHURST,A.R.C.RAINE,K.D.GRASSER, . 83 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7172.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 59.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 13.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 37 44.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 129 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 61.8 -2.4 -19.4 10.6 2 2 A K + 0 0 206 1,-0.1 2,-0.1 2,-0.0 0, 0.0 -0.302 360.0 83.2-148.1 55.8 -4.4 -16.2 10.0 3 3 A G - 0 0 71 2,-0.0 -1,-0.1 3,-0.0 3,-0.1 -0.483 54.4-167.4-160.8 81.8 -6.0 -16.4 6.5 4 4 A D > - 0 0 98 4,-0.2 3,-1.2 1,-0.1 -2,-0.0 -0.309 46.4 -73.3 -70.3 157.5 -9.3 -18.3 6.3 5 5 A P T 3 S- 0 0 104 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.268 110.8 -18.7 -54.1 127.5 -10.7 -19.3 2.8 6 6 A K T 3 S+ 0 0 190 1,-0.2 -2,-0.1 -3,-0.1 71,-0.0 0.449 101.8 139.2 53.5 -1.7 -12.0 -16.2 1.0 7 7 A K < - 0 0 85 -3,-1.2 -1,-0.2 1,-0.1 67,-0.0 -0.555 53.4-125.0 -74.0 133.2 -12.2 -14.5 4.4 8 8 A P - 0 0 17 0, 0.0 -4,-0.2 0, 0.0 -1,-0.1 0.106 10.7-145.9 -61.8-172.0 -11.1 -10.8 4.2 9 9 A R - 0 0 202 -6,-0.1 -2,-0.0 3,-0.0 61,-0.0 -0.046 57.6 -66.7-152.1 38.8 -8.2 -9.5 6.5 10 10 A G - 0 0 33 60,-0.1 3,-0.1 2,-0.1 57,-0.1 0.815 70.0 -82.3 73.3 104.4 -9.0 -5.9 7.4 11 11 A K - 0 0 92 56,-0.1 56,-0.1 55,-0.1 52,-0.1 -0.046 56.1-110.3 -37.6 124.6 -8.9 -3.5 4.4 12 12 A M - 0 0 39 1,-0.1 54,-0.1 4,-0.1 55,-0.1 -0.206 30.1-118.2 -60.7 152.0 -5.2 -2.6 3.9 13 13 A S > - 0 0 74 -3,-0.1 4,-1.3 1,-0.1 5,-0.1 -0.153 33.2 -95.1 -80.9-177.4 -4.1 0.9 4.7 14 14 A S H > S+ 0 0 6 2,-0.2 4,-1.0 1,-0.2 -1,-0.1 0.828 125.9 47.7 -70.8 -28.9 -2.6 3.3 2.2 15 15 A Y H >> S+ 0 0 54 2,-0.2 4,-1.6 1,-0.2 3,-1.0 0.960 107.9 51.6 -74.8 -53.5 0.8 2.3 3.2 16 16 A A H 3> S+ 0 0 33 1,-0.3 4,-2.3 2,-0.2 5,-0.2 0.819 106.8 57.6 -53.2 -28.3 0.3 -1.4 3.1 17 17 A F H 3X S+ 0 0 31 -4,-1.3 4,-0.9 1,-0.2 -1,-0.3 0.875 105.8 48.1 -71.3 -34.0 -1.1 -0.8 -0.4 18 18 A F H < S+ 0 0 104 -4,-1.2 3,-0.5 1,-0.2 -1,-0.3 0.800 112.2 48.2 -75.6 -28.4 8.6 -4.3 -7.7 26 26 A H H >< S+ 0 0 15 -4,-1.9 3,-1.9 1,-0.2 -2,-0.2 0.718 95.6 72.3 -82.8 -21.8 11.0 -6.0 -5.3 27 27 A K T 3< S+ 0 0 172 -4,-2.1 3,-0.3 1,-0.3 -1,-0.2 0.684 84.6 72.2 -67.1 -12.2 10.1 -9.4 -6.7 28 28 A K T < S+ 0 0 165 -3,-0.5 -1,-0.3 -4,-0.2 -2,-0.2 0.598 118.0 8.6 -79.2 -10.4 12.2 -8.2 -9.7 29 29 A K S < S+ 0 0 154 -3,-1.9 -1,-0.2 1,-0.1 -2,-0.2 0.019 106.1 83.3-163.7 46.5 15.5 -8.5 -7.9 30 30 A H > + 0 0 46 -3,-0.3 4,-0.9 -4,-0.1 -1,-0.1 -0.443 31.0 147.5-151.8 68.7 15.2 -10.2 -4.4 31 31 A P T 4 S+ 0 0 120 0, 0.0 -1,-0.1 0, 0.0 -4,-0.0 0.776 81.0 47.8 -76.0 -25.6 15.3 -14.1 -4.7 32 32 A D T 4 S+ 0 0 132 1,-0.1 -2,-0.1 -3,-0.1 0, 0.0 0.719 99.0 66.7 -87.7 -23.5 17.0 -14.4 -1.3 33 33 A A T 4 - 0 0 27 1,-0.1 3,-0.4 2,-0.1 -1,-0.1 0.920 67.3-175.3 -64.9 -43.1 14.8 -12.0 0.6 34 34 A S < - 0 0 80 -4,-0.9 -1,-0.1 1,-0.2 -2,-0.1 0.345 44.8-114.8 64.0 -12.0 11.7 -14.3 0.3 35 35 A V - 0 0 16 1,-0.1 -1,-0.2 -5,-0.1 -2,-0.1 0.952 37.5-172.5 45.9 84.8 9.9 -11.4 2.0 36 36 A N - 0 0 94 -3,-0.4 -1,-0.1 1,-0.0 -2,-0.1 0.205 44.8-113.3 -90.0 17.1 8.9 -12.9 5.4 37 37 A F S S+ 0 0 117 1,-0.1 -3,-0.0 0, 0.0 -2,-0.0 0.946 106.8 75.9 50.6 52.2 6.9 -9.8 6.2 38 38 A S S S+ 0 0 66 0, 0.0 -1,-0.1 0, 0.0 -3,-0.0 0.194 104.4 26.0-169.3 7.0 9.2 -8.9 9.0 39 39 A E S S+ 0 0 133 -6,-0.0 4,-0.3 3,-0.0 -4,-0.0 0.354 119.2 52.7-150.3 -22.1 12.2 -7.6 7.1 40 40 A F S >> S+ 0 0 12 2,-0.2 4,-2.2 3,-0.1 3,-1.7 0.935 105.9 47.6 -87.0 -60.9 10.6 -6.3 3.8 41 41 A S H 3> S+ 0 0 38 1,-0.3 4,-2.7 2,-0.2 5,-0.2 0.830 105.2 63.9 -51.6 -31.3 7.9 -4.0 5.0 42 42 A K H 3> S+ 0 0 153 1,-0.2 4,-1.2 2,-0.2 -1,-0.3 0.896 107.9 42.1 -60.1 -35.0 10.4 -2.5 7.2 43 43 A K H <> S+ 0 0 132 -3,-1.7 4,-0.8 -4,-0.3 -2,-0.2 0.923 112.4 50.6 -76.7 -47.1 12.2 -1.5 4.1 44 44 A C H >X S+ 0 0 3 -4,-2.2 3,-0.9 1,-0.2 4,-0.9 0.881 105.5 59.7 -59.8 -35.9 9.1 -0.4 2.1 45 45 A S H >X S+ 0 0 27 -4,-2.7 4,-2.2 1,-0.3 3,-1.5 0.952 102.7 49.6 -56.7 -49.2 8.2 1.8 5.1 46 46 A E H 3< S+ 0 0 159 -4,-1.2 -1,-0.3 1,-0.3 -2,-0.2 0.693 114.1 48.6 -63.5 -14.8 11.4 3.7 4.8 47 47 A R H << S+ 0 0 143 -3,-0.9 -1,-0.3 -4,-0.8 -2,-0.2 0.493 117.2 40.3-100.5 -8.6 10.4 4.0 1.1 48 48 A W H X< S+ 0 0 17 -3,-1.5 3,-1.4 -4,-0.9 -2,-0.2 0.829 104.2 58.0-103.5 -58.2 6.8 5.2 1.9 49 49 A K T 3< S+ 0 0 161 -4,-2.2 -3,-0.1 1,-0.3 -2,-0.1 0.672 107.2 58.0 -49.5 -14.2 7.0 7.6 4.9 50 50 A T T 3 S+ 0 0 95 -5,-0.4 -1,-0.3 2,-0.1 -2,-0.1 0.827 87.5 87.1 -87.3 -36.9 9.3 9.5 2.5 51 51 A M S < S- 0 0 35 -3,-1.4 2,-0.2 -4,-0.2 -3,-0.1 0.040 85.4 -98.1 -56.3 174.1 7.0 10.1 -0.4 52 52 A S > - 0 0 67 1,-0.1 4,-2.7 0, 0.0 3,-0.4 -0.591 28.5-109.8 -95.3 158.3 4.6 13.1 -0.5 53 53 A A T 4 S+ 0 0 83 1,-0.2 7,-0.2 -2,-0.2 4,-0.1 0.777 117.4 66.7 -57.7 -22.3 1.0 13.0 0.4 54 54 A K T > S+ 0 0 170 2,-0.2 4,-1.2 1,-0.2 3,-0.4 0.972 108.3 34.0 -63.3 -52.5 0.4 13.4 -3.3 55 55 A E H >> S+ 0 0 90 -3,-0.4 4,-1.1 1,-0.3 3,-0.6 0.949 120.9 48.2 -68.8 -44.9 1.8 10.0 -4.2 56 56 A K H 3X S+ 0 0 44 -4,-2.7 4,-0.6 1,-0.2 -1,-0.3 0.563 103.1 72.6 -70.8 -2.3 0.5 8.5 -1.0 57 57 A G H 3> S+ 0 0 31 -3,-0.4 4,-1.1 -5,-0.3 3,-0.3 0.921 94.8 44.1 -77.7 -48.8 -2.7 10.2 -2.0 58 58 A K H < S+ 0 0 112 -4,-1.6 3,-0.6 1,-0.2 -1,-0.2 0.738 101.2 57.1 -78.6 -22.0 -18.9 -6.0 0.0 73 73 A E H >X S+ 0 0 73 -4,-1.7 3,-1.9 1,-0.2 4,-1.0 0.801 91.0 69.4 -79.2 -28.6 -17.3 -9.3 0.8 74 74 A M T 3< S+ 0 0 65 -4,-0.8 -1,-0.2 1,-0.3 -2,-0.1 0.680 81.5 78.1 -63.6 -13.3 -19.2 -9.8 4.0 75 75 A K T <4 S+ 0 0 146 -3,-0.6 -1,-0.3 -4,-0.2 -2,-0.1 0.432 111.2 21.0 -75.6 3.8 -22.3 -10.3 1.8 76 76 A T T <4 S+ 0 0 108 -3,-1.9 -2,-0.2 0, 0.0 -1,-0.2 0.388 107.0 79.3-146.7 -7.0 -21.0 -13.8 1.0 77 77 A Y < + 0 0 59 -4,-1.0 -3,-0.1 -71,-0.0 -2,-0.1 0.905 43.2 137.9 -71.0 -94.3 -18.7 -14.9 3.8 78 78 A I - 0 0 115 -4,-0.1 -71,-0.0 2,-0.0 -3,-0.0 0.938 50.7-131.0 47.4 95.1 -20.6 -16.0 6.9 79 79 A P - 0 0 74 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.117 25.7 -94.8 -67.9 169.7 -18.9 -19.1 8.3 80 80 A P - 0 0 113 0, 0.0 2,-1.2 0, 0.0 -2,-0.0 0.286 67.3 -57.6 -66.2-158.5 -20.8 -22.3 9.2 81 81 A K S S- 0 0 193 2,-0.4 0, 0.0 1,-0.1 0, 0.0 -0.104 82.4 -91.0 -79.4 41.2 -22.0 -23.1 12.7 82 82 A G 0 0 75 -2,-1.2 -1,-0.1 0, 0.0 0, 0.0 0.189 360.0 360.0 72.5 -23.7 -18.4 -22.9 14.0 83 83 A E 0 0 229 0, 0.0 -2,-0.4 0, 0.0 0, 0.0 -0.975 360.0 360.0-162.8 360.0 -18.2 -26.6 13.3