==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 06-APR-92 1AAF . COMPND 2 MOLECULE: HIV-1 NUCLEOCAPSID PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR M.F.SUMMERS,L.E.HENDERSON,M.R.CHANCE,J.W.BESS JUNIOR,T.L.SOU . 55 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6489.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 19 34.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 18.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 7.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 5.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 229 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 76.5 -28.0 29.2 5.0 2 2 A Q - 0 0 194 1,-0.1 2,-0.3 0, 0.0 0, 0.0 0.199 360.0-121.5 59.7-178.0 -25.2 29.5 7.5 3 3 A R + 0 0 219 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.934 50.0 93.4-169.2 133.5 -22.2 27.2 7.8 4 4 A G + 0 0 39 -2,-0.3 3,-0.0 2,-0.1 0, 0.0 -0.880 44.9 80.2 150.7 169.6 -20.7 25.0 10.4 5 5 A N S S+ 0 0 178 -2,-0.3 2,-0.2 2,-0.0 0, 0.0 0.662 106.0 43.9 62.5 24.6 -20.7 21.4 11.6 6 6 A F + 0 0 157 1,-0.0 -2,-0.1 0, 0.0 3,-0.1 -0.824 46.8 119.2 178.3 151.5 -18.3 20.8 8.8 7 7 A R + 0 0 222 -2,-0.2 2,-1.3 1,-0.1 3,-0.2 0.222 40.9 116.7-177.4 -33.2 -15.2 22.1 6.9 8 8 A N + 0 0 149 1,-0.2 3,-0.2 2,-0.0 -1,-0.1 -0.435 36.6 153.9 -62.0 87.2 -12.4 19.6 7.2 9 9 A Q + 0 0 140 -2,-1.3 2,-2.4 1,-0.1 -1,-0.2 0.897 14.6 125.4 -84.7 -78.9 -12.2 19.0 3.4 10 10 A R - 0 0 199 -3,-0.2 -1,-0.1 1,-0.1 3,-0.1 -0.366 47.6-155.2 62.2 -83.4 -8.8 17.9 2.4 11 11 A K - 0 0 138 -2,-2.4 -1,-0.1 -3,-0.2 -2,-0.1 0.875 4.4-154.6 62.6 93.9 -9.6 14.7 0.6 12 12 A I + 0 0 79 -3,-0.1 2,-2.5 1,-0.1 10,-0.2 -0.096 42.1 141.5 -98.2 40.9 -6.3 12.8 1.0 13 13 A I + 0 0 119 -3,-0.1 2,-0.2 8,-0.1 -1,-0.1 -0.386 55.8 65.9 -86.6 58.8 -6.7 10.6 -2.0 14 14 A K S S- 0 0 106 -2,-2.5 2,-0.5 9,-0.2 7,-0.2 -0.592 80.4-127.9 179.7 104.2 -3.0 10.8 -3.0 15 15 A C > - 0 0 5 5,-2.1 4,-1.4 -2,-0.2 9,-0.1 -0.649 7.9-148.5 -66.0 135.6 -0.1 9.4 -1.0 16 16 A F T 4 S+ 0 0 165 -2,-0.5 -1,-0.1 1,-0.2 8,-0.1 0.628 92.6 43.6 -70.7 -21.0 2.7 11.9 -0.4 17 17 A N T 4 S+ 0 0 120 3,-0.2 -1,-0.2 1,-0.0 7,-0.0 0.865 128.1 16.5-100.7 -56.4 5.3 9.2 -0.4 18 18 A C T 4 S- 0 0 48 2,-0.2 -2,-0.2 0, 0.0 3,-0.1 0.605 90.3-133.1 -89.8 -27.7 4.7 6.8 -3.3 19 19 A G < + 0 0 54 -4,-1.4 -3,-0.1 1,-0.3 2,-0.0 0.190 66.4 123.4 98.0 -29.7 2.4 9.1 -5.2 20 20 A K - 0 0 140 -6,-0.1 -5,-2.1 1,-0.1 2,-0.4 -0.310 59.9-119.4 -69.1 154.2 -0.1 6.3 -5.7 21 21 A E S S+ 0 0 147 -7,-0.2 -8,-0.1 1,-0.1 3,-0.1 -0.827 78.2 58.4-100.6 149.3 -3.6 6.7 -4.5 22 22 A G S S+ 0 0 78 1,-0.4 2,-0.3 -2,-0.4 -1,-0.1 0.123 95.9 53.2 133.0 -30.4 -5.7 4.7 -1.9 23 23 A H S S- 0 0 62 -3,-0.3 -1,-0.4 -11,-0.1 -9,-0.2 -0.937 75.8-115.4-128.9 162.2 -3.6 5.0 1.2 24 24 A I > - 0 0 76 -2,-0.3 3,-1.5 -9,-0.1 -9,-0.1 -0.591 31.3-113.2 -95.8 166.4 -2.1 7.7 3.4 25 25 A A G > S+ 0 0 43 1,-0.3 3,-1.8 -2,-0.2 5,-0.1 0.863 112.3 66.1 -81.3 -21.2 1.7 8.1 3.8 26 26 A K G 3 S+ 0 0 188 1,-0.3 -1,-0.3 3,-0.0 -11,-0.0 0.669 108.6 42.4 -59.9 -29.9 1.6 7.2 7.5 27 27 A N G < S+ 0 0 134 -3,-1.5 2,-1.1 1,-0.0 -1,-0.3 -0.153 86.2 138.2-112.1 39.1 0.5 3.8 6.3 28 28 A C < + 0 0 34 -3,-1.8 2,-1.0 1,-0.1 -3,-0.1 -0.650 15.7 154.2-101.1 95.1 2.9 3.5 3.4 29 29 A R - 0 0 208 -2,-1.1 3,-0.2 3,-0.0 -1,-0.1 -0.694 40.8-159.5 -96.8 67.9 4.6 0.2 2.9 30 30 A A - 0 0 29 -2,-1.0 2,-0.2 1,-0.2 -2,-0.0 -0.284 30.9 -80.6 -59.8 141.8 4.9 1.2 -0.7 31 31 A P - 0 0 80 0, 0.0 2,-0.6 0, 0.0 -1,-0.2 -0.251 32.0-156.1 -63.5 130.3 5.4 -1.8 -2.9 32 32 A R - 0 0 158 -2,-0.2 2,-1.6 -3,-0.2 -3,-0.0 -0.778 29.0-132.5 -91.6 111.8 8.9 -3.3 -3.2 33 33 A K + 0 0 177 -2,-0.6 2,-0.3 0, 0.0 -1,-0.1 -0.607 62.4 111.4 -82.9 82.6 8.5 -5.0 -6.6 34 34 A R - 0 0 148 -2,-1.6 3,-0.2 1,-0.1 -2,-0.1 -0.878 41.7-166.8-151.3 119.6 9.8 -8.5 -6.2 35 35 A G S S- 0 0 24 -2,-0.3 2,-0.7 1,-0.3 11,-0.3 0.741 79.5 -7.8 -62.2-105.6 7.7 -11.7 -6.3 36 36 A C > + 0 0 2 5,-2.3 4,-1.2 8,-0.3 -1,-0.3 -0.802 63.3 173.0 -93.7 115.8 9.9 -14.5 -5.0 37 37 A W T 4 + 0 0 126 -2,-0.7 -1,-0.2 -3,-0.2 5,-0.1 0.588 68.8 78.2 -85.2 -27.6 13.4 -13.4 -4.6 38 38 A K T 4 S+ 0 0 134 1,-0.1 -1,-0.1 3,-0.1 -2,-0.0 0.916 123.1 6.5 -61.2 -29.7 14.5 -16.6 -2.9 39 39 A C T 4 S- 0 0 62 2,-0.2 -2,-0.2 12,-0.0 -1,-0.1 0.760 108.0-114.9-109.6 -48.7 14.6 -18.1 -6.4 40 40 A G S < S+ 0 0 41 -4,-1.2 -5,-0.2 1,-0.4 -3,-0.2 0.137 71.4 119.4 141.9 -23.2 14.0 -15.0 -8.4 41 41 A K - 0 0 131 1,-0.1 -5,-2.3 -6,-0.1 -1,-0.4 -0.245 54.4-146.6 -69.2 169.1 10.6 -15.7 -10.1 42 42 A E S S+ 0 0 158 -7,-0.3 -1,-0.1 1,-0.1 -5,-0.1 0.016 79.8 91.2-125.9 35.5 7.4 -13.7 -9.7 43 43 A G S S+ 0 0 73 -7,-0.1 2,-0.2 2,-0.0 -1,-0.1 0.609 99.4 5.3 -88.1 -24.1 5.1 -16.7 -10.0 44 44 A H S S- 0 0 67 -3,-0.1 2,-0.3 -8,-0.0 -8,-0.3 -0.806 73.3-107.3-151.8-178.9 5.1 -17.2 -6.2 45 45 A Q >> - 0 0 98 -2,-0.2 3,-1.4 1,-0.1 4,-1.3 -0.902 25.7-119.1-130.3 153.3 6.2 -15.9 -2.9 46 46 A M G >4 S+ 0 0 67 -11,-0.3 3,-0.7 -2,-0.3 -1,-0.1 0.944 111.9 66.6 -61.8 -32.8 8.9 -17.0 -0.4 47 47 A K G 34 S+ 0 0 188 1,-0.3 -1,-0.3 -3,-0.1 -11,-0.0 0.788 117.9 27.3 -61.4 -15.0 6.2 -17.5 2.3 48 48 A D G <4 S+ 0 0 128 -3,-1.4 2,-1.1 1,-0.0 -1,-0.3 0.557 95.5 114.8-111.7 -25.9 5.0 -20.3 -0.0 49 49 A C << + 0 0 34 -4,-1.3 3,-0.1 -3,-0.7 -3,-0.0 -0.477 12.9 125.7 -68.7 107.0 8.3 -21.2 -1.7 50 50 A T S S- 0 0 81 -2,-1.1 2,-1.5 1,-0.3 -1,-0.2 -0.175 75.7-120.8-126.1 28.5 9.5 -24.7 -0.9 51 51 A E S S- 0 0 170 2,-0.1 -1,-0.3 0, 0.0 2,-0.3 -0.481 72.0 -51.0 58.7 -84.3 9.7 -25.4 -4.7 52 52 A R + 0 0 193 -2,-1.5 -3,-0.0 -3,-0.1 0, 0.0 -0.915 58.8 164.4-175.7 144.2 7.2 -28.2 -4.0 53 53 A Q - 0 0 133 -2,-0.3 -2,-0.1 1,-0.2 -1,-0.1 0.184 40.8-133.3-155.0 24.6 7.0 -31.1 -1.6 54 54 A A 0 0 93 1,-0.1 -1,-0.2 0, 0.0 0, 0.0 0.005 360.0 360.0 61.5-162.6 3.4 -32.3 -1.8 55 55 A N 0 0 224 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.523 360.0 360.0 -67.4 360.0 1.5 -33.1 1.4