==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 18-JAN-97 1AAY . COMPND 2 MOLECULE: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.ELROD-ERICKSON,M.A.ROULD,C.O.PABO . 85 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6940.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 57.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 10.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 14.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 25 29.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 103 A R 0 0 173 0, 0.0 14,-0.2 0, 0.0 13,-0.1 0.000 360.0 360.0 360.0 84.9 -14.1 7.9 60.3 2 104 A P + 0 0 96 0, 0.0 2,-0.6 0, 0.0 13,-0.2 0.390 360.0 80.1 -77.1 -1.3 -14.5 4.5 62.1 3 105 A Y E -A 14 0A 90 11,-1.8 11,-2.7 13,-0.0 2,-0.3 -0.854 58.4-178.8-116.8 100.5 -10.8 3.7 62.3 4 106 A A E -A 13 0A 42 -2,-0.6 9,-0.2 9,-0.3 7,-0.1 -0.704 34.8-108.4 -94.9 147.2 -8.8 5.4 65.0 5 107 A C - 0 0 10 7,-2.8 5,-0.1 -2,-0.3 -1,-0.0 -0.590 22.6-146.9 -74.6 129.4 -5.1 4.9 65.5 6 108 A P + 0 0 103 0, 0.0 2,-0.5 0, 0.0 -1,-0.1 0.568 66.4 108.0 -72.2 -16.1 -4.4 2.8 68.6 7 109 A V > - 0 0 37 1,-0.2 3,-1.7 2,-0.1 -2,-0.1 -0.580 68.4-142.7 -68.2 117.7 -1.2 4.5 69.6 8 110 A E T 3 S+ 0 0 174 -2,-0.5 -1,-0.2 1,-0.3 -3,-0.0 0.803 97.9 54.9 -51.7 -34.7 -2.1 6.6 72.7 9 111 A S T 3 S+ 0 0 101 -3,-0.0 2,-0.3 2,-0.0 -1,-0.3 0.678 105.1 63.5 -74.7 -18.3 0.2 9.5 71.7 10 112 A C < - 0 0 18 -3,-1.7 0, 0.0 2,-0.1 0, 0.0 -0.810 55.8-172.7-109.6 148.7 -1.5 9.7 68.3 11 113 A D + 0 0 149 -2,-0.3 2,-0.3 -7,-0.1 -3,-0.1 -0.184 31.9 140.4-134.1 45.2 -5.1 10.6 67.5 12 114 A R - 0 0 136 8,-0.0 -7,-2.8 11,-0.0 2,-0.3 -0.684 28.7-166.4 -89.3 140.6 -5.6 10.1 63.7 13 115 A R E -A 4 0A 128 -2,-0.3 2,-0.3 -9,-0.2 -9,-0.3 -0.965 3.7-161.2-126.7 147.4 -8.9 8.6 62.4 14 116 A F E -A 3 0A 22 -11,-2.7 -11,-1.8 -2,-0.3 6,-0.0 -0.916 25.6-135.9-133.4 156.9 -9.6 7.2 58.9 15 117 A S S S+ 0 0 69 -2,-0.3 2,-0.3 -14,-0.2 -1,-0.1 0.839 91.4 37.2 -74.5 -41.1 -12.5 6.3 56.6 16 118 A R S >> S- 0 0 146 -13,-0.1 4,-1.0 1,-0.1 3,-0.6 -0.865 77.5-125.5-116.5 154.6 -11.2 2.9 55.4 17 119 A S H 3> S+ 0 0 62 -2,-0.3 4,-2.0 1,-0.2 3,-0.3 0.837 109.0 59.9 -64.5 -34.3 -9.2 0.2 57.2 18 120 A D H 3> S+ 0 0 78 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.807 99.6 56.7 -66.2 -27.6 -6.4 0.3 54.6 19 121 A E H <> S+ 0 0 53 -3,-0.6 4,-2.1 2,-0.2 -1,-0.2 0.855 107.4 49.4 -69.7 -34.3 -5.8 3.9 55.4 20 122 A L H X S+ 0 0 30 -4,-1.0 4,-2.7 -3,-0.3 -2,-0.2 0.919 110.0 50.3 -70.2 -42.2 -5.2 2.9 59.0 21 123 A T H X S+ 0 0 85 -4,-2.0 4,-0.8 2,-0.2 -2,-0.2 0.901 112.3 46.7 -63.5 -40.4 -2.8 0.1 58.0 22 124 A R H >< S+ 0 0 107 -4,-2.1 3,-0.8 1,-0.2 4,-0.2 0.938 114.5 47.3 -66.7 -44.3 -0.8 2.4 55.8 23 125 A H H >< S+ 0 0 24 -4,-2.1 3,-2.4 1,-0.2 4,-0.5 0.873 99.3 68.4 -62.5 -41.6 -0.7 5.1 58.5 24 126 A I H >X S+ 0 0 43 -4,-2.7 4,-1.9 1,-0.3 3,-1.6 0.791 84.6 74.0 -49.5 -32.1 0.3 2.6 61.2 25 127 A R H - 0 0 0 5,-2.7 4,-1.9 -2,-0.4 5,-0.0 -0.621 14.9-148.4 -75.4 122.2 15.2 1.1 46.1 36 138 A R T 4 S+ 0 0 231 -2,-0.5 -1,-0.2 1,-0.2 -2,-0.0 0.778 94.5 44.8 -60.2 -27.1 17.1 -1.3 43.8 37 139 A I T 4 S+ 0 0 98 1,-0.1 -1,-0.2 3,-0.1 -2,-0.0 0.969 128.7 14.1 -85.5 -60.8 19.7 1.4 43.2 38 140 A C T 4 S- 0 0 58 2,-0.1 -2,-0.2 0, 0.0 3,-0.1 0.490 91.2-127.3 -97.4 -3.8 20.6 3.0 46.5 39 141 A M < + 0 0 108 -4,-1.9 2,-0.1 1,-0.2 -3,-0.1 0.455 56.4 147.8 72.5 3.2 19.1 0.4 48.9 40 142 A R - 0 0 156 -6,-0.1 -5,-2.7 1,-0.1 2,-0.3 -0.449 42.0-131.3 -70.7 143.8 17.1 3.0 50.8 41 143 A N E -B 34 0B 69 -7,-0.2 2,-0.3 -2,-0.1 -7,-0.2 -0.686 19.8-162.8 -98.7 151.2 13.8 1.8 52.2 42 144 A F E -B 33 0B 28 -9,-3.1 -9,-2.0 -2,-0.3 6,-0.1 -0.959 26.1-135.8-134.7 151.5 10.4 3.5 51.8 43 145 A S S S+ 0 0 45 -2,-0.3 2,-0.3 -12,-0.2 -1,-0.1 0.745 89.6 40.6 -74.8 -24.8 7.0 3.3 53.5 44 146 A R > - 0 0 63 -11,-0.1 4,-1.1 1,-0.1 5,-0.1 -0.947 66.1-138.3-134.3 151.7 5.1 3.4 50.3 45 147 A S H > S+ 0 0 63 -2,-0.3 4,-2.1 2,-0.2 -1,-0.1 0.841 105.3 52.1 -69.3 -42.9 5.3 2.1 46.7 46 148 A D H > S+ 0 0 71 1,-0.2 4,-1.9 2,-0.2 5,-0.2 0.885 109.5 50.3 -64.7 -35.3 4.3 5.3 45.0 47 149 A H H > S+ 0 0 83 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.806 108.5 52.7 -72.7 -27.9 7.0 7.2 46.8 48 150 A L H X S+ 0 0 26 -4,-1.1 4,-2.3 2,-0.2 -2,-0.2 0.919 106.7 54.4 -70.7 -41.0 9.5 4.6 45.8 49 151 A T H X S+ 0 0 75 -4,-2.1 4,-0.8 1,-0.2 -2,-0.2 0.918 112.9 40.2 -58.6 -46.6 8.4 5.1 42.2 50 152 A T H >< S+ 0 0 34 -4,-1.9 3,-0.6 1,-0.2 4,-0.5 0.876 111.7 57.9 -74.0 -31.4 9.0 8.8 42.2 51 153 A H H >< S+ 0 0 31 -4,-1.9 3,-1.8 1,-0.2 4,-0.4 0.896 98.2 60.4 -62.7 -41.5 12.2 8.4 44.3 52 154 A I H >X S+ 0 0 50 -4,-2.3 3,-1.9 1,-0.3 4,-1.7 0.824 91.9 67.9 -57.7 -30.1 13.7 6.2 41.6 53 155 A R H - 0 0 4 5,-2.4 4,-1.8 -2,-0.3 14,-0.0 -0.543 20.6-142.6 -70.5 130.5 5.1 22.5 31.4 64 166 A D T 4 S+ 0 0 163 -2,-0.3 -1,-0.1 1,-0.2 -2,-0.0 0.769 98.0 43.8 -64.9 -26.6 2.6 23.3 28.7 65 167 A I T 4 S+ 0 0 114 3,-0.1 -1,-0.2 1,-0.1 -2,-0.0 0.910 132.6 10.1 -87.6 -46.2 3.9 26.9 28.5 66 168 A C T 4 S- 0 0 70 2,-0.1 -2,-0.2 0, 0.0 -1,-0.1 0.467 89.6-123.5-116.7 -2.3 7.7 26.6 28.5 67 169 A G < + 0 0 44 -4,-1.8 2,-0.1 1,-0.2 -3,-0.1 0.513 52.2 156.8 74.5 2.9 8.3 22.8 28.1 68 170 A R - 0 0 130 -6,-0.1 -5,-2.4 1,-0.1 2,-0.3 -0.438 34.6-135.3 -64.7 134.2 10.4 22.6 31.3 69 171 A K E -C 62 0C 123 -7,-0.2 2,-0.3 -2,-0.1 -7,-0.2 -0.659 21.4-172.7 -96.9 151.4 10.3 19.0 32.6 70 172 A F E -C 61 0C 15 -9,-2.3 -9,-2.1 -2,-0.3 3,-0.0 -0.968 31.1-133.6-140.1 155.2 9.8 17.6 36.0 71 173 A A S S+ 0 0 18 -2,-0.3 2,-0.3 -12,-0.2 -1,-0.1 0.801 92.9 40.0 -77.1 -29.9 10.0 14.2 37.8 72 174 A R S >> S- 0 0 103 -11,-0.1 4,-1.7 1,-0.1 3,-0.5 -0.925 72.7-131.8-127.4 149.2 6.7 14.8 39.6 73 175 A S H 3> S+ 0 0 55 -2,-0.3 4,-2.7 1,-0.2 5,-0.1 0.813 109.0 56.3 -63.2 -34.8 3.3 16.2 38.7 74 176 A D H 3> S+ 0 0 78 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.799 105.0 53.4 -70.3 -25.3 3.2 18.4 41.9 75 177 A E H <> S+ 0 0 55 -3,-0.5 4,-2.0 2,-0.2 -2,-0.2 0.917 110.6 46.3 -72.3 -42.5 6.5 19.9 40.8 76 178 A R H X S+ 0 0 75 -4,-1.7 4,-2.9 2,-0.2 -2,-0.2 0.940 112.1 51.3 -64.2 -43.8 5.0 20.8 37.5 77 179 A K H X S+ 0 0 136 -4,-2.7 4,-1.0 1,-0.2 -2,-0.2 0.902 109.5 49.2 -59.3 -43.2 1.8 22.2 39.2 78 180 A R H < S+ 0 0 183 -4,-2.1 4,-0.3 1,-0.2 -1,-0.2 0.891 115.7 46.2 -64.6 -35.8 3.9 24.3 41.5 79 181 A H H >< S+ 0 0 25 -4,-2.0 3,-1.9 1,-0.2 4,-0.4 0.892 99.3 62.8 -74.3 -44.4 5.9 25.6 38.5 80 182 A T H >< S+ 0 0 48 -4,-2.9 3,-1.6 1,-0.3 -1,-0.2 0.830 93.5 68.2 -54.0 -30.7 3.1 26.4 36.0 81 183 A K G >X S+ 0 0 115 -4,-1.0 3,-2.0 1,-0.3 4,-0.9 0.780 84.0 70.6 -57.6 -33.8 1.8 29.0 38.4 82 184 A I G <4 S+ 0 0 95 -3,-1.9 -1,-0.3 -4,-0.3 -2,-0.2 0.716 83.2 71.0 -62.5 -19.0 4.9 31.2 37.8 83 185 A H G <4 S+ 0 0 74 -3,-1.6 -1,-0.3 -4,-0.4 -2,-0.2 0.535 93.9 54.9 -75.6 -6.4 3.7 32.1 34.3 84 186 A L T <4 0 0 159 -3,-2.0 -1,-0.2 -4,-0.1 -2,-0.2 0.850 360.0 360.0 -84.3 -45.7 0.9 34.2 35.8 85 187 A R < 0 0 234 -4,-0.9 -3,-0.2 0, 0.0 -2,-0.1 0.024 360.0 360.0-178.6 360.0 3.6 36.0 37.7