==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOMAL PROTEIN 03-FEB-97 1AB3 . COMPND 2 MOLECULE: RIBOSOMAL RNA BINDING PROTEIN S15; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; . AUTHOR H.BERGLUND,A.RAK,A.SERGANOV,M.GARBER,T.HARD . 88 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7872.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 45 51.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 22 25.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 20 22.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A P 0 0 146 0, 0.0 5,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -38.0 74.7 -6.6 -13.2 2 2 A I - 0 0 87 1,-0.2 2,-0.2 3,-0.1 0, 0.0 0.898 360.0-148.2 -63.3 -98.6 71.2 -5.4 -14.2 3 3 A T S > S+ 0 0 106 0, 0.0 3,-1.8 0, 0.0 -1,-0.2 -0.719 71.0 17.5 165.3-110.0 71.6 -2.9 -17.2 4 4 A K G > S+ 0 0 180 1,-0.3 3,-0.9 -2,-0.2 4,-0.3 0.836 126.2 55.2 -62.7 -29.6 69.4 0.1 -18.0 5 5 A E G 3 S+ 0 0 118 1,-0.2 -1,-0.3 2,-0.2 4,-0.2 0.324 86.2 83.8 -87.3 13.0 68.1 0.0 -14.4 6 6 A E G < S+ 0 0 78 -3,-1.8 5,-0.4 1,-0.2 -1,-0.2 0.464 105.6 25.3 -91.0 -0.8 71.6 0.2 -13.1 7 7 A K S < S+ 0 0 142 -3,-0.9 -2,-0.2 3,-0.1 -1,-0.2 0.297 81.1 115.1-140.4 2.3 71.6 4.0 -13.5 8 8 A Q S S- 0 0 114 -4,-0.3 -2,-0.1 1,-0.2 -3,-0.1 0.834 115.3 -34.1 -47.8 -28.5 67.8 4.8 -13.3 9 9 A K S S+ 0 0 138 -4,-0.2 -1,-0.2 3,-0.0 -2,-0.1 0.212 113.8 104.9 176.0 33.3 68.9 6.7 -10.1 10 10 A V S > S- 0 0 43 3,-0.1 4,-1.2 4,-0.1 5,-0.1 0.904 101.4 -3.8 -90.1 -75.6 71.8 4.8 -8.5 11 11 A I T 4 S+ 0 0 21 -5,-0.4 -4,-0.1 3,-0.2 6,-0.1 0.904 123.0 71.7 -85.2 -46.5 75.0 6.7 -9.1 12 12 A Q T 4 S+ 0 0 94 1,-0.3 -1,-0.2 2,-0.2 -5,-0.1 0.840 112.9 34.6 -38.4 -32.9 73.6 9.4 -11.3 13 13 A E T 4 S+ 0 0 75 13,-0.0 -1,-0.3 -6,-0.0 -2,-0.2 0.846 137.0 23.8 -91.1 -39.9 72.1 10.5 -8.0 14 14 A F S < S+ 0 0 46 -4,-1.2 2,-0.4 1,-0.1 -3,-0.2 0.929 116.7 58.6 -89.1 -67.7 75.0 9.5 -5.9 15 15 A A - 0 0 4 1,-0.2 6,-0.2 -5,-0.1 -1,-0.1 -0.480 63.5-165.7 -66.1 119.0 78.0 9.4 -8.2 16 16 A R S S+ 0 0 127 -2,-0.4 -1,-0.2 4,-0.2 -4,-0.1 0.032 71.5 39.6 -93.9 29.9 78.4 12.9 -9.7 17 17 A F S > S- 0 0 136 -6,-0.1 3,-0.5 1,-0.0 4,-0.1 -0.978 95.4 -96.7-163.7 169.0 80.7 11.6 -12.3 18 18 A P T 3 S+ 0 0 134 0, 0.0 -6,-0.0 0, 0.0 -3,-0.0 0.448 128.9 29.3 -74.0 0.6 81.3 8.6 -14.6 19 19 A G T > S+ 0 0 53 2,-0.1 3,-0.8 3,-0.0 4,-0.2 0.278 93.8 90.8-140.5 5.8 83.7 7.3 -12.0 20 20 A D T < S+ 0 0 44 -3,-0.5 6,-0.3 1,-0.2 -4,-0.2 0.211 70.9 80.0 -90.6 19.8 82.2 8.7 -8.7 21 21 A T T 3 S+ 0 0 55 -6,-0.2 -1,-0.2 1,-0.1 -6,-0.1 0.668 88.8 51.8 -95.9 -20.0 80.1 5.5 -8.4 22 22 A G S < S+ 0 0 50 -3,-0.8 -2,-0.1 4,-0.1 -1,-0.1 0.581 86.5 113.0 -90.9 -9.5 83.1 3.5 -7.0 23 23 A S S > S- 0 0 47 -4,-0.2 4,-0.9 1,-0.1 5,-0.1 0.066 85.5-106.4 -51.3 174.8 83.7 6.2 -4.3 24 24 A T H > S+ 0 0 78 2,-0.2 4,-2.2 3,-0.1 5,-0.1 0.808 117.1 54.1 -78.9 -27.7 83.0 5.3 -0.7 25 25 A E H > S+ 0 0 17 2,-0.2 4,-1.6 1,-0.2 5,-0.2 0.991 107.5 46.2 -69.6 -59.9 79.8 7.3 -0.6 26 26 A V H > S+ 0 0 6 -6,-0.3 4,-1.7 1,-0.2 -1,-0.2 0.854 113.4 54.0 -52.1 -32.0 78.1 5.8 -3.6 27 27 A Q H X S+ 0 0 79 -4,-0.9 4,-1.7 2,-0.2 -1,-0.2 0.968 98.6 58.4 -69.9 -49.7 79.1 2.4 -2.2 28 28 A V H X S+ 0 0 3 -4,-2.2 4,-0.8 1,-0.3 -1,-0.2 0.883 106.5 53.1 -47.7 -32.9 77.5 3.1 1.2 29 29 A A H >X S+ 0 0 6 -4,-1.6 3,-1.3 1,-0.2 4,-1.2 0.952 106.2 49.1 -69.0 -45.0 74.4 3.5 -0.8 30 30 A L H 3X S+ 0 0 54 -4,-1.7 4,-1.9 1,-0.3 -1,-0.2 0.690 99.7 70.9 -66.9 -12.1 74.9 0.2 -2.5 31 31 A L H 3< S+ 0 0 1 -4,-1.7 4,-0.5 2,-0.2 -1,-0.3 0.850 96.4 50.4 -71.7 -31.4 75.3 -1.1 1.0 32 32 A T H XX S+ 0 0 37 -3,-1.3 4,-2.0 -4,-0.8 3,-0.7 0.939 108.6 50.3 -72.1 -46.6 71.6 -0.6 1.6 33 33 A L H 3X S+ 0 0 100 -4,-1.2 4,-2.4 1,-0.3 5,-0.3 0.979 108.3 50.9 -56.8 -56.7 70.5 -2.5 -1.5 34 34 A R H 3< S+ 0 0 133 -4,-1.9 -1,-0.3 1,-0.2 -2,-0.2 0.752 108.5 58.6 -54.7 -18.4 72.7 -5.5 -0.7 35 35 A I H X> S+ 0 0 37 -3,-0.7 3,-1.5 -4,-0.5 4,-1.1 0.965 107.0 41.2 -76.3 -55.1 71.0 -5.3 2.7 36 36 A N H 3X S+ 0 0 107 -4,-2.0 4,-0.8 1,-0.3 3,-0.4 0.912 118.7 46.8 -60.6 -41.3 67.4 -5.7 1.5 37 37 A R H 3< S+ 0 0 182 -4,-2.4 -1,-0.3 -5,-0.2 -2,-0.2 0.377 101.6 70.9 -83.7 10.1 68.3 -8.4 -1.0 38 38 A L H X4 S+ 0 0 40 -3,-1.5 3,-0.9 -5,-0.3 4,-0.4 0.824 96.3 46.8 -91.4 -36.9 70.3 -10.1 1.7 39 39 A S H 3< S+ 0 0 93 -4,-1.1 4,-0.2 -3,-0.4 -2,-0.2 0.808 110.1 54.4 -75.6 -27.7 67.3 -11.3 3.8 40 40 A E T 3< S+ 0 0 125 -4,-0.8 -1,-0.2 1,-0.2 5,-0.2 0.184 86.7 92.9 -90.9 20.4 65.6 -12.6 0.6 41 41 A H S X> S+ 0 0 70 -3,-0.9 4,-2.4 1,-0.2 3,-1.0 0.985 93.7 28.0 -75.2 -69.8 68.7 -14.6 -0.2 42 42 A L T 34 S+ 0 0 106 -4,-0.4 -1,-0.2 1,-0.3 -2,-0.1 0.571 106.8 81.4 -70.2 -4.0 67.9 -18.0 1.4 43 43 A K T 34 S+ 0 0 164 -4,-0.2 -1,-0.3 1,-0.1 -2,-0.1 0.237 115.3 10.7 -86.0 18.4 64.2 -17.1 0.8 44 44 A V T <4 S+ 0 0 115 -3,-1.0 -2,-0.2 0, 0.0 -1,-0.1 0.279 107.5 95.0-158.7 -39.7 64.6 -18.3 -2.7 45 45 A H < + 0 0 91 -4,-2.4 -3,-0.0 -5,-0.2 3,-0.0 0.178 41.1 177.5 -50.5-176.6 68.0 -20.1 -2.9 46 46 A K + 0 0 186 3,-0.0 -1,-0.1 -3,-0.0 -4,-0.1 0.216 66.0 32.5 176.3 33.3 68.0 -23.9 -2.5 47 47 A K S S+ 0 0 168 1,-0.0 -2,-0.0 2,-0.0 0, 0.0 0.054 86.0 81.8 164.7 72.0 71.6 -25.2 -3.0 48 48 A D - 0 0 107 -3,-0.0 -3,-0.0 -6,-0.0 3,-0.0 0.003 48.0-179.3 178.5 58.8 74.5 -23.0 -1.9 49 49 A H + 0 0 175 1,-0.2 -3,-0.0 2,-0.1 3,-0.0 0.198 61.5 70.5 -54.1-170.1 75.3 -23.1 1.9 50 50 A H S S+ 0 0 180 2,-0.1 -1,-0.2 3,-0.0 3,-0.1 0.785 73.2 165.9 66.6 22.5 78.2 -21.0 3.2 51 51 A S + 0 0 24 1,-0.2 3,-0.2 2,-0.1 4,-0.1 0.240 45.7 67.5 -54.3-168.0 75.9 -18.0 2.5 52 52 A H > - 0 0 114 1,-0.2 3,-1.3 -14,-0.1 2,-1.1 0.799 69.7-173.5 60.5 23.7 76.9 -14.6 4.0 53 53 A R T 3 S- 0 0 189 1,-0.3 -1,-0.2 2,-0.1 -2,-0.1 -0.261 76.2 -43.3 -52.3 92.7 79.9 -14.6 1.7 54 54 A G T 3 S+ 0 0 63 -2,-1.1 3,-0.4 -3,-0.2 -1,-0.3 0.809 104.9 138.1 51.0 25.2 81.5 -11.5 3.1 55 55 A L < + 0 0 19 -3,-1.3 4,-0.3 1,-0.2 -1,-0.2 0.024 50.6 76.5 -89.8 31.6 78.0 -10.1 3.1 56 56 A L S >> S+ 0 0 120 -4,-0.2 4,-2.0 2,-0.1 3,-1.0 0.762 71.3 73.3-106.7 -40.2 78.5 -8.5 6.5 57 57 A M H 3> S+ 0 0 145 -3,-0.4 4,-0.7 1,-0.3 -2,-0.1 0.838 92.0 64.0 -45.2 -32.2 80.7 -5.5 5.6 58 58 A M H >4 S+ 0 0 14 -4,-0.3 3,-0.8 2,-0.2 -1,-0.3 0.967 104.3 43.0 -59.9 -50.7 77.4 -4.1 4.2 59 59 A V H X> S+ 0 0 69 -3,-1.0 4,-1.9 -4,-0.3 3,-1.1 0.960 116.2 47.0 -61.3 -48.6 75.8 -4.0 7.6 60 60 A G H 3< S+ 0 0 38 -4,-2.0 4,-0.4 1,-0.3 -1,-0.3 0.601 98.4 75.5 -69.6 -6.0 79.0 -2.6 9.3 61 61 A Q T << S+ 0 0 48 -3,-0.8 -1,-0.3 -4,-0.7 -2,-0.2 0.172 111.7 21.2 -90.9 21.3 79.1 -0.1 6.4 62 62 A R T X4 S+ 0 0 72 -3,-1.1 3,-1.0 -5,-0.1 4,-0.3 0.386 105.7 73.4-152.0 -38.3 76.2 1.8 8.0 63 63 A R T 3< S+ 0 0 169 -4,-1.9 -3,-0.1 1,-0.3 -2,-0.1 0.701 127.1 10.2 -61.3 -13.6 76.1 1.0 11.7 64 64 A R T > S+ 0 0 128 -4,-0.4 3,-1.2 2,-0.1 4,-0.3 0.021 81.5 133.1-154.5 33.8 79.3 3.1 11.9 65 65 A L G X> S+ 0 0 31 -3,-1.0 3,-1.6 1,-0.3 4,-1.4 0.840 74.1 64.2 -59.7 -28.4 79.6 4.9 8.6 66 66 A L G 34>S+ 0 0 52 -4,-0.3 5,-1.5 1,-0.3 -1,-0.3 0.858 85.1 72.0 -64.3 -31.9 80.3 8.1 10.6 67 67 A R G <45S+ 0 0 160 -3,-1.2 -1,-0.3 3,-0.2 -2,-0.2 0.714 114.8 24.8 -57.6 -15.1 83.4 6.5 12.0 68 68 A Y T <>5S+ 0 0 173 -3,-1.6 4,-2.0 -4,-0.3 -2,-0.2 0.717 136.5 20.4-112.8 -74.6 84.8 7.0 8.5 69 69 A L T ><5S+ 0 0 36 -4,-1.4 3,-0.8 2,-0.2 4,-0.3 0.998 128.4 45.8 -63.0 -64.4 83.2 9.8 6.5 70 70 A Q G >45S+ 0 0 48 -5,-0.5 3,-0.7 1,-0.3 -1,-0.2 0.831 113.5 55.1 -49.0 -29.2 81.7 11.7 9.4 71 71 A R G 34 S+ 0 0 106 1,-0.2 3,-0.8 2,-0.1 -5,-0.1 0.924 101.3 57.1 -75.8 -42.7 79.8 18.4 7.6 76 76 A R G >> S+ 0 0 89 1,-0.3 3,-0.9 -7,-0.2 4,-0.6 0.741 93.7 73.9 -60.1 -16.3 79.9 15.4 5.2 77 77 A Y G 34 S+ 0 0 62 -4,-0.4 -1,-0.3 1,-0.2 -2,-0.1 -0.047 93.6 52.7 -87.3 36.3 78.1 13.7 8.1 78 78 A R G <4 S+ 0 0 168 -3,-0.8 -1,-0.2 -2,-0.2 -2,-0.1 0.112 101.1 52.3-156.0 27.3 74.9 15.5 7.2 79 79 A A T X4 S+ 0 0 35 -3,-0.9 3,-1.2 3,-0.0 4,-0.3 0.546 109.9 34.4-129.9 -66.6 74.2 14.9 3.5 80 80 A L T 3< S+ 0 0 25 -4,-0.6 5,-0.4 1,-0.3 3,-0.3 0.570 104.9 78.9 -72.2 -1.7 74.2 11.3 2.5 81 81 A I T > >S+ 0 0 39 1,-0.2 5,-1.0 -5,-0.2 3,-0.6 0.880 97.9 41.1 -72.9 -33.3 72.7 10.7 5.9 82 82 A E T < 5S+ 0 0 135 -3,-1.2 -1,-0.2 1,-0.2 -2,-0.2 0.483 119.1 47.6 -90.7 -0.7 69.3 11.8 4.5 83 83 A K T 3 5S+ 0 0 106 -4,-0.3 -1,-0.2 -3,-0.3 -2,-0.2 0.022 116.7 33.0-127.7 30.9 69.9 9.9 1.3 84 84 A L T < 5S- 0 0 29 -3,-0.6 -3,-0.1 -52,-0.0 -2,-0.1 0.419 106.9 -87.6-145.6 -61.4 71.0 6.4 2.4 85 85 A G T 5S+ 0 0 28 -4,-0.5 -3,-0.1 -5,-0.4 -4,-0.1 0.465 71.7 133.2 140.2 49.9 69.6 5.1 5.7 86 86 A I S