==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 20-JUL-05 2ADN . COMPND 2 MOLECULE: CCDA; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR T.MADL,L.VANMELDEREN,M.OBERER,W.KELLER,L.KHATAI,K.ZANGGER . 144 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 13016.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 47.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 7 4.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 19 13.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 32 22.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 175 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-175.4 8.7 -13.7 -11.5 2 2 A K - 0 0 160 81,-0.1 2,-0.5 82,-0.1 81,-0.2 -0.942 360.0-143.2-136.6 158.2 9.0 -10.8 -9.2 3 3 A Q - 0 0 72 79,-0.3 79,-1.7 -2,-0.3 2,-1.2 -0.976 12.6-144.2-126.8 119.4 8.8 -7.0 -9.4 4 4 A R E +A 81 0A 165 -2,-0.5 2,-0.7 77,-0.3 77,-0.2 -0.685 21.1 179.4 -86.7 99.5 11.0 -4.8 -7.3 5 5 A I E +A 80 0A 7 -2,-1.2 75,-2.5 75,-0.7 2,-0.5 -0.871 10.0 175.2-100.0 110.3 8.9 -1.7 -6.4 6 6 A T E -A 79 0A 34 -2,-0.7 2,-0.9 73,-0.3 73,-0.2 -0.958 23.9-162.8-127.9 122.3 11.1 0.5 -4.2 7 7 A V E -A 78 0A 4 71,-1.6 2,-1.3 -2,-0.5 71,-1.1 -0.845 22.2-140.7 -99.6 101.4 10.2 3.9 -2.9 8 8 A T E +A 77 0A 59 -2,-0.9 69,-0.3 69,-0.2 3,-0.2 -0.481 38.9 164.0 -65.8 94.8 13.5 5.5 -1.9 9 9 A V E +A 76 0A 0 67,-2.4 2,-0.8 -2,-1.3 67,-0.5 0.676 33.2 118.0 -84.3-120.7 12.3 7.2 1.3 10 10 A D S S+ 0 0 69 65,-0.3 -1,-0.1 2,-0.2 65,-0.1 0.002 102.4 40.8 75.3 -32.7 14.5 8.6 4.1 11 11 A S S S+ 0 0 88 -2,-0.8 -1,-0.2 -3,-0.2 -2,-0.1 0.686 107.6 71.7-110.2 -35.9 12.9 11.9 3.1 12 12 A D S > S- 0 0 51 -4,-0.2 3,-0.8 1,-0.1 4,-0.3 -0.202 98.7 -99.2 -77.5 170.9 9.4 10.6 2.5 13 13 A S T >> S+ 0 0 22 1,-0.2 3,-1.6 2,-0.2 4,-1.1 0.671 102.5 92.5 -67.1 -18.6 7.0 9.6 5.3 14 14 A Y H 3> S+ 0 0 14 1,-0.3 4,-2.2 2,-0.2 3,-0.4 0.880 81.0 58.3 -40.0 -51.0 7.7 5.9 4.9 15 15 A Q H <> S+ 0 0 40 -3,-0.8 4,-2.9 1,-0.2 -1,-0.3 0.850 98.6 60.1 -50.6 -40.2 10.5 6.1 7.5 16 16 A L H <> S+ 0 0 66 -3,-1.6 4,-0.6 -4,-0.3 -1,-0.2 0.938 108.2 42.5 -55.7 -51.0 8.0 7.4 10.1 17 17 A L H >< S+ 0 0 1 -4,-1.1 3,-1.0 -3,-0.4 -2,-0.2 0.934 121.0 40.4 -62.4 -48.5 5.9 4.2 9.8 18 18 A K H 3X S+ 0 0 38 -4,-2.2 4,-1.3 1,-0.3 3,-0.3 0.784 106.1 65.9 -71.7 -25.3 8.8 1.9 9.8 19 19 A A H 3< S+ 0 0 40 -4,-2.9 -1,-0.3 -5,-0.4 -2,-0.2 0.698 120.3 22.6 -66.9 -18.3 10.4 4.1 12.4 20 20 A Y T << S+ 0 0 72 -3,-1.0 -1,-0.2 -4,-0.6 -2,-0.2 0.188 150.0 6.0-130.3 9.8 7.6 2.9 14.6 21 21 A D T 4 - 0 0 54 -3,-0.3 2,-3.9 -4,-0.2 -2,-0.2 0.062 63.8-159.7 168.3 62.8 6.7 -0.4 12.9 22 22 A V < + 0 0 99 -4,-1.3 -4,-0.2 1,-0.2 -7,-0.0 -0.252 65.4 105.3 -59.7 69.6 9.0 -1.3 10.0 23 23 A N + 0 0 107 -2,-3.9 -1,-0.2 -6,-0.1 -5,-0.0 -0.551 42.4 98.6-149.9 64.2 6.3 -3.5 8.6 24 24 A I > + 0 0 2 2,-0.1 4,-4.0 3,-0.1 6,-0.3 0.565 53.7 83.7-125.8 -31.7 5.1 -1.6 5.7 25 25 A S H > S+ 0 0 53 1,-0.3 4,-1.1 2,-0.3 5,-0.1 0.924 105.7 37.9 -43.0 -48.4 6.8 -3.1 2.8 26 26 A G H > S+ 0 0 30 1,-0.2 4,-1.2 2,-0.2 -1,-0.3 0.906 112.7 59.4 -67.9 -39.3 4.0 -5.6 2.8 27 27 A L H > S+ 0 0 25 2,-0.2 4,-4.1 1,-0.2 5,-0.4 0.867 94.7 64.7 -54.4 -41.8 1.7 -2.8 3.8 28 28 A V H X S+ 0 0 1 -4,-4.0 4,-1.0 1,-0.3 -1,-0.2 0.952 108.2 38.8 -47.8 -57.7 2.6 -1.1 0.5 29 29 A S H X S+ 0 0 2 -4,-1.1 4,-1.4 1,-0.2 -1,-0.3 0.689 117.1 54.6 -65.9 -19.6 1.1 -3.9 -1.5 30 30 A T H X S+ 0 0 45 -4,-1.2 4,-1.6 -3,-0.3 -2,-0.2 0.930 101.1 54.2 -80.1 -47.8 -1.7 -4.1 1.1 31 31 A T H X S+ 0 0 24 -4,-4.1 4,-1.6 1,-0.2 -2,-0.2 0.769 110.4 51.7 -56.4 -23.4 -2.7 -0.4 0.9 32 32 A M H X S+ 0 0 0 -4,-1.0 4,-2.9 -5,-0.4 -1,-0.2 0.899 98.5 61.7 -79.1 -44.1 -3.0 -1.2 -2.8 33 33 A Q H X S+ 0 0 68 -4,-1.4 4,-3.7 2,-0.2 5,-0.2 0.860 109.7 43.9 -50.1 -37.5 -5.3 -4.2 -2.3 34 34 A N H X S+ 0 0 65 -4,-1.6 4,-2.2 2,-0.2 -1,-0.2 0.949 119.5 39.4 -73.4 -48.8 -7.7 -1.8 -0.7 35 35 A E H < S+ 0 0 85 -4,-1.6 -2,-0.2 -5,-0.2 -1,-0.2 0.645 120.0 52.5 -72.7 -12.8 -7.3 0.8 -3.4 36 36 A A H < S+ 0 0 4 -4,-2.9 3,-0.5 -6,-0.2 -2,-0.2 0.917 108.3 45.2 -86.3 -52.8 -7.2 -2.2 -5.7 37 37 A R H < S+ 0 0 189 -4,-3.7 -2,-0.2 1,-0.3 -3,-0.2 0.963 117.4 45.1 -53.0 -56.4 -10.4 -3.9 -4.7 38 38 A R S < S+ 0 0 186 -4,-2.2 -1,-0.3 -5,-0.2 2,-0.2 0.700 93.7 107.0 -61.8 -19.4 -12.2 -0.6 -4.7 39 39 A L + 0 0 48 -3,-0.5 3,-0.1 -5,-0.2 4,-0.1 -0.435 28.1 137.5 -65.7 129.1 -10.5 0.1 -8.0 40 40 A R S S- 0 0 190 -2,-0.2 2,-2.8 2,-0.1 -1,-0.1 -0.035 72.2-100.3-167.3 44.8 -12.9 -0.2 -10.9 41 41 A A S S+ 0 0 96 52,-0.1 2,-0.4 2,-0.0 -2,-0.0 -0.376 107.9 70.1 66.9 -73.8 -12.3 2.6 -13.4 42 42 A E + 0 0 138 -2,-2.8 2,-0.3 -3,-0.1 -2,-0.1 -0.615 61.8 162.2 -78.9 128.6 -15.2 4.7 -12.1 43 43 A R - 0 0 202 -2,-0.4 2,-0.2 -4,-0.1 -4,-0.0 -0.927 12.6-173.7-151.9 122.3 -14.7 6.1 -8.6 44 44 A W + 0 0 200 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.502 19.8 146.2-107.3 178.1 -16.5 9.0 -6.9 45 45 A K + 0 0 137 -2,-0.2 2,-3.1 2,-0.0 -1,-0.1 -0.052 1.0 160.1-169.6 -74.7 -16.1 10.8 -3.6 46 46 A V S S- 0 0 138 1,-0.1 2,-0.2 2,-0.1 -2,-0.0 -0.344 84.7 -5.3 67.0 -69.7 -16.9 14.5 -3.4 47 47 A E S S+ 0 0 119 -2,-3.1 2,-0.4 0, 0.0 -1,-0.1 -0.789 70.1 169.4-160.5 111.1 -17.2 14.4 0.4 48 48 A N + 0 0 96 -2,-0.2 2,-0.2 2,-0.0 -2,-0.1 -0.989 18.5 128.1-129.8 128.4 -17.0 11.4 2.7 49 49 A Q + 0 0 119 -2,-0.4 2,-0.3 2,-0.0 0, 0.0 -0.569 12.6 142.4-179.3 109.2 -16.8 11.4 6.5 50 50 A E S S- 0 0 145 -2,-0.2 -2,-0.0 2,-0.1 0, 0.0 -0.806 75.9 -3.8-159.1 112.3 -18.9 9.6 9.1 51 51 A G S > >S- 0 0 16 -2,-0.3 2,-2.6 4,-0.1 3,-1.5 0.031 74.5-147.8 96.0 -27.1 -17.7 8.0 12.3 52 52 A M T 3 5S- 0 0 156 1,-0.3 -2,-0.1 3,-0.1 5,-0.1 -0.366 84.4 -5.1 63.8 -77.1 -14.1 8.7 11.7 53 53 A V T 3 5S- 0 0 59 -2,-2.6 -1,-0.3 6,-0.0 4,-0.0 0.742 142.5 -24.3-112.3 -45.5 -12.9 5.6 13.5 54 54 A E T < 5S- 0 0 126 -3,-1.5 -2,-0.1 5,-0.0 -4,-0.0 0.369 103.0 -58.8-131.4 -89.8 -16.0 4.1 15.0 55 55 A V T 5S+ 0 0 122 -4,-0.1 -3,-0.1 -3,-0.0 -4,-0.1 0.052 123.2 2.1-157.1 25.6 -19.1 6.2 15.7 56 56 A A S S- 0 0 64 -4,-0.2 3,-0.7 1,-0.1 4,-0.3 -0.088 99.5 -98.0 -69.5 171.2 1.6 -8.6 -4.0 86 113 B S T >> S+ 0 0 16 -57,-0.2 3,-1.2 1,-0.2 4,-1.2 0.647 103.3 91.0 -68.1 -18.1 -1.1 -6.0 -4.7 87 114 B Y H >> S+ 0 0 13 1,-0.3 4,-2.0 2,-0.2 3,-1.4 0.914 85.5 53.4 -41.4 -54.9 1.4 -3.2 -5.4 88 115 B Q H <> S+ 0 0 33 -3,-0.7 4,-3.1 1,-0.3 -1,-0.3 0.830 98.8 64.3 -50.7 -37.9 1.3 -4.1 -9.1 89 116 B L H <4 S+ 0 0 52 -3,-1.2 4,-0.4 -4,-0.3 -1,-0.3 0.868 107.9 41.0 -56.3 -38.5 -2.5 -3.8 -9.0 90 117 B L H X< S+ 0 0 17 -3,-1.4 3,-0.7 -4,-1.2 -2,-0.2 0.899 119.1 42.9 -77.4 -43.5 -2.2 -0.1 -8.3 91 118 B K H 3X S+ 0 0 11 -4,-2.0 4,-1.1 1,-0.2 3,-0.4 0.781 104.0 67.2 -73.5 -25.5 0.7 0.6 -10.7 92 119 B A T 3< S+ 0 0 2 -4,-3.1 49,-0.7 -5,-0.3 -1,-0.2 0.782 123.2 16.4 -63.2 -26.5 -1.0 -1.6 -13.3 93 120 B Y T <4 S+ 0 0 84 -3,-0.7 -1,-0.3 -4,-0.4 -2,-0.2 0.111 149.4 14.5-131.8 17.8 -3.7 1.1 -13.3 94 121 B D T 4 - 0 0 99 -3,-0.4 2,-3.9 45,-0.1 -2,-0.2 0.056 62.0-164.7 169.8 62.4 -1.9 4.0 -11.6 95 122 B V < + 0 0 102 -4,-1.1 -4,-0.2 1,-0.2 -7,-0.0 -0.291 63.6 105.3 -63.2 69.4 1.9 3.5 -11.3 96 123 B N + 0 0 119 -2,-3.9 -1,-0.2 -6,-0.1 -5,-0.0 -0.582 44.8 94.1-149.5 66.6 1.9 6.3 -8.8 97 124 B I > + 0 0 3 3,-0.1 4,-5.0 2,-0.1 6,-0.2 0.562 58.0 77.9-132.7 -33.7 2.4 4.5 -5.6 98 125 B S H > S+ 0 0 34 1,-0.3 4,-1.1 2,-0.2 -91,-0.1 0.959 109.6 34.8 -48.7 -54.4 6.0 4.5 -4.7 99 126 B G H > S+ 0 0 42 1,-0.2 4,-0.7 2,-0.2 -1,-0.3 0.859 117.1 57.5 -65.8 -33.0 5.8 8.1 -3.6 100 127 B L H >> S+ 0 0 36 1,-0.2 4,-2.7 2,-0.2 3,-1.6 0.912 93.6 66.6 -61.6 -45.9 2.3 7.3 -2.4 101 128 B V H 3X S+ 0 0 0 -4,-5.0 4,-0.9 1,-0.3 -1,-0.2 0.905 104.0 44.2 -40.1 -57.6 3.7 4.5 -0.1 102 129 B S H 3X S+ 0 0 6 -4,-1.1 4,-1.5 1,-0.2 -1,-0.3 0.702 111.5 56.3 -63.2 -21.5 5.4 7.1 2.0 103 130 B T H S- 0 0 155 4,-0.4 2,-3.0 0, 0.0 4,-1.8 -0.960 119.6 -9.4-133.8 151.4 -2.6 0.2 -22.6 139 166 B A T 4 S- 0 0 68 -2,-0.3 -45,-0.1 1,-0.2 -46,-0.1 -0.355 115.4 -69.0 66.4 -72.1 -2.4 1.4 -19.0 140 167 B D T 4 S+ 0 0 71 -2,-3.0 -1,-0.2 -47,-0.1 -47,-0.1 0.096 123.2 12.2-179.8 -40.5 -0.3 -1.5 -17.9 141 168 B E T 4 S+ 0 0 116 -49,-0.7 -2,-0.1 -3,-0.2 2,-0.1 -0.087 96.4 115.6-147.7 37.6 -2.4 -4.6 -18.1 142 169 B N < - 0 0 46 -4,-1.8 -4,-0.4 1,-0.1 -6,-0.1 -0.435 48.9-151.5-102.6 179.0 -5.5 -3.6 -20.0 143 170 B K - 0 0 124 -2,-0.1 -1,-0.1 -6,-0.1 -4,-0.0 0.732 69.5 -42.9-114.4 -65.8 -6.9 -4.7 -23.3 144 171 B D 0 0 151 -7,-0.0 -2,-0.1 -6,-0.0 -7,-0.0 0.497 360.0 360.0-133.9 -68.3 -9.0 -2.0 -24.9 145 172 B W 0 0 282 -7,-0.0 -3,-0.0 -3,-0.0 0, 0.0 0.509 360.0 360.0 -99.5 360.0 -11.3 -0.1 -22.6