==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 04-MAR-97 1AE2 . COMPND 2 MOLECULE: GENE V PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR S.SU,Y.-G.GAO,H.ZHANG,T.C.TERWILLIGER,A.H.-J.WANG . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6384.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 54.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 30 34.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 11.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 4 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 214 0, 0.0 2,-0.6 0, 0.0 61,-0.0 0.000 360.0 360.0 360.0 -77.0 -1.1 19.5 2.9 2 2 A I - 0 0 46 61,-0.1 2,-0.6 35,-0.0 61,-0.5 -0.849 360.0-141.5 -92.0 125.0 -0.6 16.5 5.3 3 3 A K E -A 36 0A 95 -2,-0.6 33,-3.1 33,-0.5 2,-0.4 -0.773 23.6-178.4 -84.6 116.9 0.4 17.8 8.8 4 4 A V E -AB 35 61A 0 57,-2.5 57,-2.6 -2,-0.6 2,-0.4 -0.928 4.6-166.2-116.0 141.4 3.0 15.5 10.4 5 5 A E E -AB 34 60A 60 29,-2.6 29,-2.4 -2,-0.4 2,-0.7 -0.974 18.3-158.8-137.3 126.1 4.5 16.1 13.9 6 6 A I E - B 0 59A 1 53,-2.8 53,-2.4 -2,-0.4 27,-0.1 -0.933 25.5-151.4 -98.5 105.2 7.4 14.7 15.7 7 7 A K > - 0 0 74 -2,-0.7 3,-2.7 51,-0.2 4,-0.2 -0.476 30.6-103.3 -67.7 151.0 6.7 15.2 19.5 8 8 A P G > S+ 0 0 107 0, 0.0 3,-0.9 0, 0.0 -1,-0.1 0.817 124.8 56.6 -53.8 -25.9 9.7 15.7 22.0 9 9 A S G 3 S+ 0 0 112 1,-0.2 3,-0.2 2,-0.1 -3,-0.0 0.607 102.0 56.9 -79.1 -7.4 9.1 12.0 23.1 10 10 A Q G < S+ 0 0 15 -3,-2.7 22,-0.5 1,-0.1 -1,-0.2 0.324 70.8 108.0-105.7 10.1 9.5 10.8 19.5 11 11 A A < + 0 0 44 -3,-0.9 2,-0.3 -4,-0.2 -1,-0.1 0.354 68.9 65.3 -74.2 3.1 13.0 12.2 18.8 12 12 A Q - 0 0 147 -3,-0.2 20,-0.4 42,-0.1 2,-0.3 -0.862 67.0-145.2-122.1 157.8 14.8 8.8 18.9 13 13 A F - 0 0 58 -2,-0.3 2,-0.3 18,-0.1 18,-0.2 -0.787 4.6-139.8-117.4 167.3 14.6 5.7 16.7 14 14 A T E -C 30 0A 76 16,-1.9 16,-2.7 -2,-0.3 2,-0.5 -0.836 16.7-135.3-119.2 159.2 14.9 2.1 17.2 15 15 A T E -C 29 0A 77 -2,-0.3 2,-0.4 14,-0.2 14,-0.2 -0.977 9.7-163.1-120.8 119.0 16.7 -0.4 14.9 16 16 A R E -C 28 0A 137 12,-2.7 12,-2.1 -2,-0.5 2,-0.3 -0.816 18.4-163.0 -97.6 149.3 15.5 -3.7 13.8 17 17 A S E +C 27 0A 86 -2,-0.4 2,-0.3 10,-0.2 10,-0.2 -0.800 21.7 111.0-129.6 162.5 18.0 -6.1 12.4 18 18 A G E -C 26 0A 24 8,-1.5 8,-2.3 -2,-0.3 2,-0.4 -0.999 48.9 -73.7 169.7-163.9 18.4 -9.3 10.3 19 19 A V E -C 25 0A 92 6,-0.3 5,-0.2 -2,-0.3 4,-0.1 -0.991 35.3-121.4-134.8 127.5 19.5 -11.1 7.1 20 20 A S > - 0 0 32 4,-3.1 3,-2.5 -2,-0.4 -2,-0.0 -0.344 36.4-105.0 -61.8 150.2 18.0 -11.2 3.6 21 21 A R T 3 S+ 0 0 246 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.656 123.8 55.2 -49.1 -26.4 16.9 -14.7 2.1 22 22 A Q T 3 S- 0 0 147 2,-0.1 -1,-0.3 0, 0.0 2,-0.2 -0.001 128.4 -95.3 -91.5 19.8 20.0 -14.5 -0.0 23 23 A G S < S+ 0 0 48 -3,-2.5 -2,-0.1 1,-0.2 -3,-0.1 -0.093 81.2 130.6 89.5 -37.5 22.4 -14.1 3.0 24 24 A K - 0 0 141 -2,-0.2 -4,-3.1 -5,-0.2 -1,-0.2 -0.306 53.2-131.4 -58.6 113.7 22.8 -10.2 3.1 25 25 A P E -C 19 0A 95 0, 0.0 -6,-0.3 0, 0.0 2,-0.3 -0.223 26.9-169.1 -57.4 140.7 22.3 -8.5 6.5 26 26 A Y E -C 18 0A 89 -8,-2.3 -8,-1.5 2,-0.0 2,-0.3 -0.894 15.1-156.7-125.3 171.3 20.0 -5.5 6.9 27 27 A S E -C 17 0A 80 -2,-0.3 2,-0.5 -10,-0.2 -10,-0.2 -0.849 4.6-163.6-153.9 115.2 19.0 -2.8 9.4 28 28 A L E -C 16 0A 59 -12,-2.1 -12,-2.7 -2,-0.3 2,-0.6 -0.817 5.6-157.8 -98.3 125.8 15.8 -0.8 9.5 29 29 A N E -C 15 0A 35 -2,-0.5 20,-2.7 20,-0.4 2,-0.4 -0.891 17.1-173.7 -93.2 118.2 15.6 2.4 11.6 30 30 A E E -CD 14 48A 32 -16,-2.7 -16,-1.9 -2,-0.6 2,-0.3 -0.880 10.5-178.6-117.4 156.1 12.1 3.4 12.6 31 31 A Q E - D 0 47A 1 16,-2.6 16,-2.4 -2,-0.4 2,-0.3 -0.828 20.2-126.4-136.3 164.0 10.6 6.4 14.3 32 32 A R E + D 0 46A 77 -22,-0.5 2,-0.3 -20,-0.4 14,-0.2 -0.868 30.0 160.7-114.5 159.0 7.0 7.5 15.4 33 33 A C E - D 0 45A 0 12,-1.3 12,-2.5 -2,-0.3 2,-0.5 -0.935 36.3-104.5-161.1 173.9 5.1 10.6 14.7 34 34 A Y E -AD 5 44A 81 -29,-2.4 -29,-2.6 -2,-0.3 2,-0.5 -0.962 26.4-162.2-115.3 134.5 1.6 11.9 14.6 35 35 A V E -AD 4 43A 9 8,-2.8 8,-2.6 -2,-0.5 2,-1.2 -0.944 16.9-134.8-121.9 125.9 -0.2 12.5 11.5 36 36 A D E +A 3 0A 53 -33,-3.1 -33,-0.5 -2,-0.5 -2,-0.0 -0.606 28.7 169.3 -81.6 104.5 -3.2 14.7 11.3 37 37 A L - 0 0 108 -2,-1.2 -1,-0.2 4,-0.2 3,-0.1 0.258 62.5 -99.0 -97.9 17.0 -5.8 12.8 9.3 38 38 A G S S+ 0 0 68 1,-0.2 -2,-0.1 2,-0.0 2,-0.1 0.690 84.3 128.8 74.9 17.5 -8.5 15.3 10.1 39 39 A N S S- 0 0 76 2,-0.3 -1,-0.2 1,-0.0 4,-0.0 -0.286 82.6 -78.7 -88.5-173.3 -10.0 13.1 12.9 40 40 A E S S+ 0 0 189 1,-0.1 -1,-0.0 -2,-0.1 -2,-0.0 0.941 117.9 4.1 -55.2 -39.8 -10.7 14.3 16.6 41 41 A Y S S- 0 0 193 1,-0.0 -2,-0.3 -4,-0.0 -4,-0.2 -0.931 96.3 -85.0-135.7 160.2 -7.0 14.0 17.3 42 42 A P - 0 0 53 0, 0.0 2,-0.2 0, 0.0 -6,-0.2 -0.259 45.6-123.2 -56.9 149.9 -3.9 13.1 15.2 43 43 A V E -D 35 0A 47 -8,-2.6 -8,-2.8 -4,-0.0 2,-0.4 -0.655 19.5-109.7 -99.1 159.9 -3.1 9.4 14.7 44 44 A L E -D 34 0A 76 -2,-0.2 2,-0.4 -10,-0.2 -10,-0.2 -0.730 37.5-175.6 -92.6 133.4 0.1 7.6 15.6 45 45 A V E -D 33 0A 42 -12,-2.5 -12,-1.3 -2,-0.4 2,-0.5 -0.961 21.9-139.7-130.7 137.9 2.3 6.4 12.6 46 46 A K E -D 32 0A 140 -2,-0.4 2,-0.4 -14,-0.2 -14,-0.2 -0.855 22.2-169.7 -94.6 127.5 5.5 4.4 12.3 47 47 A I E -D 31 0A 5 -16,-2.4 -16,-2.6 -2,-0.5 2,-0.5 -0.961 14.9-141.5-113.2 133.8 7.9 5.6 9.6 48 48 A T E -D 30 0A 41 -2,-0.4 -18,-0.2 -18,-0.2 2,-0.1 -0.893 22.2-138.2 -90.8 125.1 11.1 3.7 8.3 49 49 A L - 0 0 5 -20,-2.7 -20,-0.4 -2,-0.5 2,-0.2 -0.368 20.8-106.7 -74.9 155.9 14.0 6.0 7.7 50 50 A D > - 0 0 44 1,-0.1 3,-1.8 4,-0.1 -1,-0.1 -0.576 51.5 -76.8 -81.3 155.8 16.2 5.6 4.7 51 51 A E T 3 S+ 0 0 197 1,-0.3 -1,-0.1 -2,-0.2 -23,-0.1 -0.107 121.6 18.4 -44.5 140.2 19.8 4.2 5.1 52 52 A G T 3 S+ 0 0 83 1,-0.2 -1,-0.3 -3,-0.1 -2,-0.0 0.512 95.6 133.2 70.9 1.4 22.1 6.9 6.6 53 53 A Q < - 0 0 46 -3,-1.8 -1,-0.2 -24,-0.0 2,-0.1 -0.724 48.5-142.6 -85.0 126.3 19.2 9.0 7.8 54 54 A P - 0 0 97 0, 0.0 -4,-0.1 0, 0.0 3,-0.1 -0.502 39.5 -84.8 -72.8 157.2 19.2 10.4 11.4 55 55 A A - 0 0 24 -2,-0.1 2,-0.3 1,-0.1 -44,-0.1 -0.185 51.1-100.5 -53.8 146.3 15.9 10.5 13.3 56 56 A Y - 0 0 28 -46,-0.2 -1,-0.1 -44,-0.1 3,-0.1 -0.611 37.7-123.8 -70.3 130.6 13.8 13.6 12.5 57 57 A A - 0 0 59 -2,-0.3 -51,-0.2 1,-0.1 -1,-0.1 -0.352 43.9 -75.3 -64.3 156.8 14.1 16.2 15.3 58 58 A P S S+ 0 0 62 0, 0.0 2,-0.3 0, 0.0 -51,-0.2 -0.210 87.7 81.7 -51.7 140.5 10.8 17.4 17.1 59 59 A G E S-B 6 0A 27 -53,-2.4 -53,-2.8 -3,-0.1 2,-0.4 -0.922 77.9 -48.9 154.0-179.0 8.8 19.7 14.9 60 60 A L E +B 5 0A 90 -2,-0.3 26,-2.1 -55,-0.2 2,-0.3 -0.834 51.8 172.7 -93.8 126.1 6.3 20.2 12.2 61 61 A Y E -BE 4 85A 26 -57,-2.6 -57,-2.5 -2,-0.4 2,-0.3 -0.900 19.9-153.7-126.7 156.4 6.7 18.4 8.9 62 62 A T E - E 0 84A 42 22,-2.6 22,-2.3 -2,-0.3 2,-0.3 -0.899 37.4 -89.1-127.5 166.9 4.9 17.8 5.7 63 63 A V E - E 0 83A 24 -61,-0.5 2,-0.3 -2,-0.3 20,-0.2 -0.537 33.0-136.0 -82.8 135.1 5.2 14.9 3.2 64 64 A H > - 0 0 87 18,-3.1 3,-2.2 -2,-0.3 18,-0.4 -0.691 19.8-121.2 -84.6 144.1 7.8 15.0 0.4 65 65 A L G > S+ 0 0 142 -2,-0.3 3,-2.1 1,-0.3 -1,-0.1 0.819 107.3 73.2 -54.0 -34.3 6.7 13.8 -3.1 66 66 A S G 3 S+ 0 0 55 1,-0.3 -1,-0.3 13,-0.0 14,-0.2 0.495 79.0 76.7 -59.4 -5.7 9.3 11.2 -3.1 67 67 A S G < S+ 0 0 0 -3,-2.2 12,-3.9 15,-0.2 13,-0.4 0.684 88.1 74.3 -72.3 -20.9 7.2 9.3 -0.6 68 68 A F E < +F 78 0B 59 -3,-2.1 2,-0.3 10,-0.2 10,-0.2 -0.590 52.8 161.7-100.2 151.6 4.9 8.2 -3.5 69 69 A K E -F 77 0B 75 8,-2.2 8,-3.5 -2,-0.2 2,-0.5 -0.988 41.8-100.2-155.2 163.2 5.2 5.7 -6.3 70 70 A V E -F 76 0B 101 -2,-0.3 6,-0.2 6,-0.2 2,-0.1 -0.773 43.4-141.5 -89.8 132.4 3.0 3.8 -8.8 71 71 A G > - 0 0 16 4,-3.3 3,-1.9 -2,-0.5 -1,-0.0 -0.370 28.3 -90.4 -87.5 179.7 2.4 0.2 -7.6 72 72 A Q T 3 S+ 0 0 176 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.403 124.0 53.1 -70.5 -0.6 2.2 -3.0 -9.5 73 73 A F T 3 S- 0 0 178 2,-0.2 -1,-0.3 0, 0.0 3,-0.1 0.095 121.2-103.8-111.9 16.3 -1.6 -2.7 -10.1 74 74 A G S < S+ 0 0 60 -3,-1.9 -2,-0.1 1,-0.2 2,-0.1 0.411 83.5 118.7 79.2 -4.5 -1.2 0.8 -11.6 75 75 A S S S- 0 0 75 1,-0.1 -4,-3.3 -5,-0.1 2,-0.3 -0.484 71.8 -96.6 -92.2 162.1 -2.5 2.8 -8.6 76 76 A L E +F 70 0B 124 -6,-0.2 2,-0.3 -2,-0.1 -6,-0.2 -0.621 48.6 174.8 -73.7 131.2 -0.6 5.4 -6.5 77 77 A M E -F 69 0B 81 -8,-3.5 -8,-2.2 -2,-0.3 2,-0.4 -0.884 33.7-104.8-126.7 168.6 1.0 3.9 -3.3 78 78 A I E -F 68 0B 89 -2,-0.3 -10,-0.2 -10,-0.2 3,-0.1 -0.776 26.4-175.3 -90.5 132.1 3.3 5.2 -0.5 79 79 A D S S- 0 0 71 -12,-3.9 2,-0.3 -2,-0.4 -1,-0.2 0.857 71.3 -25.3 -81.4 -69.2 6.8 3.9 -0.7 80 80 A R S S- 0 0 74 -13,-0.4 2,-0.5 -14,-0.2 -1,-0.4 -0.969 71.0-110.0-143.7 131.7 8.2 5.3 2.5 81 81 A L - 0 0 31 -2,-0.3 2,-0.4 -3,-0.1 -18,-0.0 -0.577 41.7-172.9 -66.4 113.3 6.9 8.4 4.3 82 82 A R - 0 0 42 -2,-0.5 -18,-3.1 -18,-0.4 2,-0.3 -0.945 8.2-151.3-117.4 130.1 9.7 11.0 3.7 83 83 A L E -E 63 0A 14 -2,-0.4 -20,-0.2 -20,-0.2 -22,-0.0 -0.765 17.0-170.7-119.9 151.7 9.4 14.3 5.4 84 84 A V E -E 62 0A 49 -22,-2.3 -22,-2.6 -2,-0.3 -2,-0.0 -0.988 41.7 -85.6-132.4 145.5 10.4 17.9 5.0 85 85 A P E E 61 0A 108 0, 0.0 -24,-0.3 0, 0.0 -26,-0.0 -0.209 360.0 360.0 -48.7 131.0 10.3 21.0 7.4 86 86 A A 0 0 95 -26,-2.1 -24,-0.1 -82,-0.1 -26,-0.1 -0.041 360.0 360.0 -75.7 360.0 6.9 22.7 7.3