==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 04-MAR-97 1AE3 . COMPND 2 MOLECULE: GENE V PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR S.SU,Y.-G.GAO,H.ZHANG,T.C.TERWILLIGER,A.H.-J.WANG . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6438.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 54.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 31 36.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 3 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 224 0, 0.0 2,-0.5 0, 0.0 61,-0.0 0.000 360.0 360.0 360.0 -65.3 -1.0 19.2 2.8 2 2 A I - 0 0 47 61,-0.1 61,-0.6 35,-0.0 2,-0.5 -0.956 360.0-146.7-100.3 124.3 -0.3 16.3 5.2 3 3 A K E -AB 36 62A 98 -2,-0.5 33,-2.3 33,-0.5 2,-0.4 -0.844 18.4-176.0 -92.6 124.4 0.9 17.7 8.6 4 4 A V E -AB 35 61A 0 57,-2.2 57,-2.8 -2,-0.5 2,-0.4 -0.899 4.6-163.5-120.1 137.1 3.4 15.4 10.4 5 5 A E E -AB 34 60A 50 29,-2.4 29,-2.6 -2,-0.4 2,-0.7 -0.995 14.0-158.0-128.4 131.3 4.8 16.1 13.8 6 6 A I E - B 0 59A 1 53,-3.0 53,-2.8 -2,-0.4 27,-0.1 -0.957 23.7-151.0-101.6 113.2 7.8 14.6 15.7 7 7 A K > - 0 0 77 -2,-0.7 3,-2.2 51,-0.2 4,-0.1 -0.468 28.0-106.8 -72.5 150.3 7.2 15.1 19.4 8 8 A P G > S+ 0 0 104 0, 0.0 3,-1.2 0, 0.0 -1,-0.1 0.845 121.9 59.4 -45.7 -38.3 10.2 15.6 22.0 9 9 A S G 3 S+ 0 0 112 1,-0.2 3,-0.2 2,-0.1 -3,-0.0 0.588 107.2 47.7 -66.7 -7.0 9.5 11.9 23.2 10 10 A Q G < S+ 0 0 16 -3,-2.2 -1,-0.2 1,-0.1 22,-0.2 0.218 71.2 123.1-117.7 16.2 10.2 10.7 19.6 11 11 A A S < S+ 0 0 37 -3,-1.2 2,-0.3 -4,-0.1 -1,-0.1 0.576 73.0 31.3 -67.7 -12.9 13.4 12.5 18.8 12 12 A Q S S- 0 0 120 -3,-0.2 20,-0.3 42,-0.1 2,-0.2 -0.885 74.8-116.8-137.4 178.5 15.4 9.4 18.0 13 13 A F - 0 0 56 -2,-0.3 2,-0.3 18,-0.1 18,-0.2 -0.571 5.9-133.3-107.8 176.2 15.1 5.8 16.6 14 14 A T E -C 30 0A 85 16,-2.0 16,-2.7 -2,-0.2 2,-0.4 -0.888 24.8-133.2-122.1 155.0 15.5 2.1 17.2 15 15 A T E -C 29 0A 75 -2,-0.3 2,-0.4 14,-0.2 14,-0.2 -0.880 15.7-171.8-117.8 136.1 17.2 -0.4 14.9 16 16 A R E +C 28 0A 137 12,-2.7 12,-3.0 -2,-0.4 2,-0.3 -0.964 15.5 175.9-124.6 142.4 16.1 -3.7 13.8 17 17 A S E +C 27 0A 77 -2,-0.4 2,-0.3 10,-0.2 10,-0.2 -0.805 13.8 136.4-142.9 175.0 18.3 -6.1 11.9 18 18 A G E -C 26 0A 25 8,-1.9 8,-3.0 -2,-0.3 2,-0.4 -0.980 48.9 -57.9 173.8-161.8 18.7 -9.4 10.4 19 19 A V E -C 25 0A 103 -2,-0.3 4,-0.1 6,-0.3 5,-0.1 -0.895 39.6-130.2-117.7 131.9 20.0 -11.3 7.3 20 20 A S > - 0 0 19 4,-2.9 3,-1.0 -2,-0.4 6,-0.0 -0.275 30.9-107.3 -69.7 157.6 19.0 -10.9 3.7 21 21 A R T 3 S+ 0 0 199 1,-0.3 2,-1.3 2,-0.1 -1,-0.1 0.936 125.5 54.3 -52.3 -40.7 18.0 -13.8 1.4 22 22 A Q T 3 S- 0 0 162 1,-0.1 -1,-0.3 2,-0.1 -2,-0.1 -0.220 127.7-104.8 -90.0 50.6 21.5 -13.3 -0.3 23 23 A G S < S+ 0 0 52 -2,-1.3 -2,-0.1 -3,-1.0 -1,-0.1 0.445 76.9 140.1 45.1 13.0 23.0 -13.6 3.2 24 24 A K - 0 0 153 -5,-0.1 -4,-2.9 1,-0.1 -1,-0.1 -0.659 54.2-120.7 -86.4 123.8 23.7 -9.9 3.5 25 25 A P E -C 19 0A 103 0, 0.0 2,-0.3 0, 0.0 -6,-0.3 -0.369 31.8-165.4 -59.6 135.4 23.0 -8.3 7.0 26 26 A Y E -C 18 0A 95 -8,-3.0 -8,-1.9 2,-0.0 2,-0.3 -0.906 11.5-165.2-115.9 161.2 20.5 -5.5 7.0 27 27 A S E -C 17 0A 81 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.2 -0.975 2.8-167.7-145.3 129.2 19.6 -2.9 9.5 28 28 A L E -C 16 0A 60 -12,-3.0 -12,-2.7 -2,-0.3 2,-0.5 -0.958 9.1-152.2-116.8 128.2 16.5 -0.7 9.5 29 29 A N E -C 15 0A 35 20,-0.5 20,-1.6 -2,-0.4 2,-0.4 -0.897 16.4-167.6-101.2 134.6 16.1 2.4 11.7 30 30 A E E -CD 14 48A 33 -16,-2.7 -16,-2.0 -2,-0.5 2,-0.3 -0.947 9.0-174.5-130.0 144.7 12.6 3.4 12.7 31 31 A Q E - D 0 47A 2 16,-2.5 16,-3.2 -2,-0.4 2,-0.3 -0.941 19.7-127.7-134.8 150.0 11.0 6.4 14.3 32 32 A L E + D 0 46A 68 -20,-0.3 2,-0.3 -2,-0.3 14,-0.2 -0.695 31.8 162.6 -97.6 146.0 7.6 7.3 15.5 33 33 A C E - D 0 45A 0 12,-1.9 12,-2.3 -2,-0.3 2,-0.5 -0.954 35.0-111.6-148.0 174.0 5.6 10.4 14.6 34 34 A Y E -AD 5 44A 79 -29,-2.6 -29,-2.4 -2,-0.3 2,-0.5 -0.960 24.3-165.5-112.3 124.0 2.0 11.8 14.6 35 35 A V E -AD 4 43A 9 8,-2.9 8,-2.9 -2,-0.5 2,-1.0 -0.930 19.4-133.0-109.0 132.7 0.2 12.4 11.3 36 36 A D E +A 3 0A 62 -33,-2.3 -33,-0.5 -2,-0.5 -2,-0.0 -0.757 29.2 171.1 -83.3 102.3 -2.9 14.6 11.3 37 37 A L - 0 0 106 -2,-1.0 -1,-0.2 4,-0.3 3,-0.1 0.158 61.5 -98.2 -94.9 17.1 -5.5 12.6 9.3 38 38 A G S S+ 0 0 68 1,-0.2 -2,-0.1 2,-0.0 0, 0.0 0.542 84.8 128.7 81.2 2.9 -8.3 15.0 10.2 39 39 A N S S- 0 0 96 2,-0.3 -1,-0.2 1,-0.1 4,-0.0 -0.082 82.4 -85.7 -75.0-174.9 -9.7 12.8 13.1 40 40 A E S S+ 0 0 182 1,-0.1 -1,-0.1 -3,-0.1 -2,-0.0 0.893 115.4 17.7 -61.9 -37.0 -10.3 14.4 16.6 41 41 A Y S S- 0 0 191 1,-0.0 -4,-0.3 -4,-0.0 -2,-0.3 -0.913 97.3 -90.7-127.8 152.2 -6.6 13.8 17.5 42 42 A P - 0 0 54 0, 0.0 2,-0.3 0, 0.0 -6,-0.2 -0.270 43.6-123.1 -59.6 152.5 -3.4 13.0 15.4 43 43 A V E -D 35 0A 52 -8,-2.9 -8,-2.9 -4,-0.0 2,-0.5 -0.776 17.1-112.3-100.8 143.9 -2.6 9.4 14.7 44 44 A L E +D 34 0A 95 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.2 -0.637 37.6 179.7 -77.2 120.5 0.6 7.5 15.5 45 45 A V E -D 33 0A 46 -12,-2.3 -12,-1.9 -2,-0.5 2,-0.4 -0.935 21.9-138.1-121.1 138.4 2.6 6.3 12.4 46 46 A K E -D 32 0A 106 -2,-0.4 2,-0.4 -14,-0.2 -14,-0.2 -0.810 21.6-167.0 -86.6 127.1 6.0 4.4 12.2 47 47 A I E -D 31 0A 7 -16,-3.2 -16,-2.5 -2,-0.4 2,-0.6 -0.942 13.6-140.9-117.1 145.6 8.5 5.6 9.6 48 48 A T E -D 30 0A 43 -2,-0.4 -18,-0.2 -18,-0.2 -2,-0.0 -0.927 19.7-142.4-108.4 118.3 11.7 3.9 8.3 49 49 A L - 0 0 8 -20,-1.6 -20,-0.5 -2,-0.6 2,-0.2 -0.147 18.0-112.6 -70.8 153.8 14.7 6.1 7.7 50 50 A D > - 0 0 90 1,-0.2 3,-1.8 4,-0.1 -1,-0.1 -0.482 50.2 -70.5 -86.7 163.7 17.1 5.6 4.9 51 51 A E T 3 S+ 0 0 199 1,-0.2 -1,-0.2 -2,-0.2 -23,-0.0 -0.270 118.6 9.2 -52.2 132.6 20.7 4.5 5.3 52 52 A G T 3 S+ 0 0 77 1,-0.2 -1,-0.2 -3,-0.1 -2,-0.0 0.394 95.2 123.2 77.7 -1.5 22.9 7.2 6.9 53 53 A Q < - 0 0 59 -3,-1.8 -1,-0.2 1,-0.0 3,-0.1 -0.785 55.6-137.1 -90.6 126.1 20.0 9.6 7.8 54 54 A P - 0 0 89 0, 0.0 -4,-0.1 0, 0.0 3,-0.1 -0.316 38.6 -77.2 -68.3 166.4 19.7 10.5 11.5 55 55 A A - 0 0 11 1,-0.1 2,-0.2 -44,-0.1 -44,-0.1 -0.340 57.7-101.6 -58.4 141.9 16.4 10.6 13.4 56 56 A Y - 0 0 30 -46,-0.1 -1,-0.1 -3,-0.1 3,-0.1 -0.479 39.4-116.5 -60.7 137.3 14.4 13.8 12.5 57 57 A A - 0 0 61 -2,-0.2 -51,-0.2 1,-0.1 -1,-0.1 -0.377 45.6 -75.0 -65.9 161.1 14.6 16.4 15.2 58 58 A P S S+ 0 0 63 0, 0.0 2,-0.3 0, 0.0 -51,-0.2 -0.215 89.6 70.8 -52.2 143.0 11.3 17.5 17.1 59 59 A G E S-B 6 0A 30 -53,-2.8 -53,-3.0 -3,-0.1 2,-0.4 -0.876 79.9 -41.6 142.2-171.2 9.1 19.7 15.0 60 60 A L E +B 5 0A 85 -2,-0.3 26,-2.0 -55,-0.2 2,-0.3 -0.797 49.2 168.9-103.7 131.1 6.7 20.0 12.1 61 61 A Y E -BE 4 85A 28 -57,-2.8 -57,-2.2 -2,-0.4 2,-0.3 -0.828 20.6-147.2-131.8 162.5 7.2 18.5 8.8 62 62 A T E -BE 3 84A 40 22,-2.9 22,-2.6 -2,-0.3 2,-0.4 -0.844 35.5 -89.0-122.3 175.8 5.3 17.8 5.6 63 63 A V E - E 0 83A 24 -61,-0.6 2,-0.3 -2,-0.3 20,-0.2 -0.622 32.5-133.8 -88.6 131.3 5.5 14.9 3.1 64 64 A H > - 0 0 84 18,-3.1 3,-2.3 -2,-0.4 18,-0.4 -0.633 19.4-122.7 -78.6 141.7 7.9 14.8 0.1 65 65 A L G > S+ 0 0 143 -2,-0.3 3,-1.9 1,-0.3 -1,-0.1 0.778 106.6 73.1 -52.6 -29.8 6.6 13.8 -3.3 66 66 A S G 3 S+ 0 0 75 1,-0.3 14,-0.3 16,-0.1 -1,-0.3 0.615 77.6 78.2 -65.7 -10.0 9.2 11.0 -3.4 67 67 A S G < S+ 0 0 0 -3,-2.3 12,-3.9 15,-0.2 13,-0.3 0.693 88.8 73.2 -65.0 -18.3 7.2 9.1 -0.8 68 68 A F E < +F 78 0B 62 -3,-1.9 2,-0.3 10,-0.3 10,-0.2 -0.655 52.9 161.9-104.3 152.2 4.9 8.0 -3.6 69 69 A K E -F 77 0B 78 8,-2.3 8,-2.6 -2,-0.3 2,-0.5 -0.985 43.8 -96.1-155.4 162.2 5.0 5.6 -6.5 70 70 A V E -F 76 0B 104 -2,-0.3 6,-0.2 6,-0.2 2,-0.1 -0.742 47.3-141.5 -81.1 125.0 2.7 3.8 -9.0 71 71 A G > - 0 0 14 4,-2.9 3,-2.0 -2,-0.5 -1,-0.1 -0.259 28.0 -87.8 -79.2 179.4 2.1 0.3 -7.6 72 72 A Q T 3 S+ 0 0 173 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.579 125.5 49.8 -64.6 -16.6 1.8 -3.1 -9.4 73 73 A F T 3 S- 0 0 173 2,-0.2 -1,-0.3 0, 0.0 3,-0.1 0.224 121.2-103.0-106.5 10.8 -1.9 -2.7 -10.1 74 74 A G S < S+ 0 0 57 -3,-2.0 2,-0.3 1,-0.3 -2,-0.1 0.463 84.6 115.9 89.9 -1.2 -1.6 0.8 -11.5 75 75 A S S S- 0 0 76 1,-0.1 -4,-2.9 -5,-0.1 -1,-0.3 -0.731 70.7 -97.1 -99.8 158.2 -2.8 2.7 -8.6 76 76 A L E +F 70 0B 122 -2,-0.3 2,-0.3 -6,-0.2 -6,-0.2 -0.431 46.4 168.8 -73.1 143.1 -0.8 5.2 -6.5 77 77 A M E -F 69 0B 77 -8,-2.6 -8,-2.3 -2,-0.1 2,-0.4 -0.974 38.2-102.6-145.8 158.8 0.8 4.1 -3.2 78 78 A I E -F 68 0B 91 -2,-0.3 -10,-0.3 -10,-0.2 3,-0.1 -0.631 28.6-176.7 -78.9 127.1 3.3 5.3 -0.5 79 79 A D S S- 0 0 91 -12,-3.9 2,-0.4 -2,-0.4 -1,-0.2 0.812 73.2 -22.1 -79.3 -71.1 6.7 3.6 -0.9 80 80 A R S S- 0 0 81 -13,-0.3 -1,-0.3 -14,-0.3 2,-0.3 -0.985 75.4-115.6-138.4 126.7 8.6 5.0 2.1 81 81 A L - 0 0 33 -2,-0.4 2,-0.5 -3,-0.1 -33,-0.1 -0.511 30.4-165.5 -66.6 121.4 7.3 8.4 3.7 82 82 A C - 0 0 39 -18,-0.4 -18,-3.1 -2,-0.3 2,-0.3 -0.945 8.1-149.0-111.6 119.8 10.0 11.1 3.4 83 83 A L E -E 63 0A 8 -2,-0.5 -20,-0.2 -20,-0.2 -22,-0.0 -0.613 12.4-171.4 -95.3 140.1 9.6 14.2 5.5 84 84 A V E -E 62 0A 43 -22,-2.6 -22,-2.9 -2,-0.3 -2,-0.0 -0.968 40.9 -90.4-119.3 145.2 10.6 17.8 4.7 85 85 A P E E 61 0A 104 0, 0.0 -24,-0.3 0, 0.0 -26,-0.0 -0.379 360.0 360.0 -58.6 131.8 10.5 20.7 7.2 86 86 A A 0 0 114 -26,-2.0 -25,-0.1 -82,-0.1 -23,-0.0 0.814 360.0 360.0 -46.4 360.0 7.3 22.4 7.1