==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER INTEGRAL MEMBRANE PROTEIN 11-MAR-97 1AFO . COMPND 2 MOLECULE: GLYCOPHORIN A; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.R.MACKENZIE,J.H.PRESTEGARD,D.M.ENGELMAN . 80 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7686.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 68.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 50 62.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 62 A V 0 0 175 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 88.7 -11.0 13.4 7.0 2 63 A Q - 0 0 169 1,-0.2 0, 0.0 2,-0.0 0, 0.0 0.238 360.0-148.3-105.0 14.1 -14.8 13.3 6.7 3 64 A L - 0 0 107 1,-0.2 -1,-0.2 3,-0.0 3,-0.1 0.042 9.5-123.6 46.1-165.8 -14.8 9.8 5.2 4 65 A A S S+ 0 0 80 1,-0.0 2,-0.3 0, 0.0 -1,-0.2 0.093 75.4 51.8-163.0 31.3 -17.7 9.1 2.7 5 66 A H + 0 0 118 1,-0.1 3,-0.1 8,-0.0 4,-0.1 -0.926 32.4 143.4-157.1-179.6 -19.5 6.0 4.0 6 67 A H + 0 0 174 1,-0.6 -1,-0.1 -2,-0.3 2,-0.0 -0.048 51.5 90.5 170.1 -53.3 -21.2 4.6 7.1 7 68 A F S S- 0 0 189 2,-0.1 -1,-0.6 3,-0.0 0, 0.0 -0.371 96.4 -8.4 -67.5 147.1 -24.4 2.6 6.3 8 69 A S S S- 0 0 98 1,-0.2 -2,-0.2 -3,-0.1 0, 0.0 0.187 92.7 -86.0 51.3 174.9 -23.8 -1.2 5.6 9 70 A E - 0 0 171 -4,-0.1 2,-0.7 4,-0.0 -1,-0.2 -0.826 35.2-147.2-122.1 94.3 -20.2 -2.5 5.3 10 71 A P > - 0 0 33 0, 0.0 4,-2.3 0, 0.0 5,-0.3 -0.409 3.3-157.1 -60.4 104.9 -18.9 -2.1 1.8 11 72 A E H > S+ 0 0 111 -2,-0.7 4,-2.9 1,-0.2 5,-0.2 0.907 94.9 52.7 -53.1 -39.2 -16.5 -5.1 1.4 12 73 A I H > S+ 0 0 82 2,-0.2 4,-3.5 1,-0.2 5,-0.3 0.942 105.3 53.2 -64.0 -45.2 -14.8 -3.1 -1.3 13 74 A T H > S+ 0 0 29 2,-0.2 4,-2.9 1,-0.2 -2,-0.2 0.948 114.1 42.2 -57.0 -46.9 -14.3 -0.1 0.9 14 75 A L H X S+ 0 0 87 -4,-2.3 4,-3.3 2,-0.2 5,-0.2 0.961 115.5 48.4 -67.1 -47.4 -12.6 -2.2 3.6 15 76 A I H X S+ 0 0 18 -4,-2.9 4,-2.5 -5,-0.3 5,-0.2 0.969 114.6 46.7 -57.3 -47.6 -10.6 -4.3 1.1 16 77 A I H X S+ 0 0 72 -4,-3.5 4,-3.0 -5,-0.2 -1,-0.2 0.951 111.8 51.6 -57.7 -47.2 -9.5 -1.0 -0.5 17 78 A F H X S+ 0 0 113 -4,-2.9 4,-3.4 -5,-0.3 -2,-0.2 0.945 107.9 51.5 -56.9 -47.1 -8.7 0.5 2.9 18 79 A G H X S+ 0 0 8 -4,-3.3 4,-2.6 2,-0.2 5,-0.2 0.959 110.6 48.4 -57.0 -47.4 -6.6 -2.6 3.8 19 80 A V H X S+ 0 0 38 -4,-2.5 4,-2.3 -5,-0.2 -1,-0.2 0.960 112.6 48.8 -57.5 -47.5 -4.6 -2.1 0.6 20 81 A M H X S+ 0 0 119 -4,-3.0 4,-2.9 1,-0.2 -2,-0.2 0.944 109.2 53.0 -57.5 -47.0 -4.2 1.6 1.4 21 82 A A H X S+ 0 0 57 -4,-3.4 4,-2.8 -5,-0.2 5,-0.2 0.943 107.2 51.2 -57.0 -46.6 -3.1 0.8 4.9 22 83 A G H X S+ 0 0 7 -4,-2.6 4,-2.4 1,-0.2 5,-0.2 0.963 111.0 48.7 -57.1 -47.4 -0.4 -1.6 3.6 23 84 A V H X S+ 0 0 41 -4,-2.3 4,-2.7 -5,-0.2 -1,-0.2 0.950 110.3 51.5 -57.3 -47.2 0.9 1.1 1.3 24 85 A I H X S+ 0 0 104 -4,-2.9 4,-2.9 1,-0.2 5,-0.2 0.945 108.2 51.3 -57.1 -47.2 0.9 3.6 4.2 25 86 A G H X S+ 0 0 35 -4,-2.8 4,-2.6 1,-0.2 -1,-0.2 0.957 110.4 49.0 -57.1 -47.4 2.9 1.2 6.4 26 87 A T H X S+ 0 0 20 -4,-2.4 4,-2.7 -5,-0.2 -1,-0.2 0.953 110.9 50.5 -57.5 -47.2 5.5 0.8 3.6 27 88 A I H X S+ 0 0 78 -4,-2.7 4,-2.9 -5,-0.2 -1,-0.2 0.946 108.7 51.7 -57.1 -47.0 5.7 4.6 3.2 28 89 A L H X S+ 0 0 97 -4,-2.9 4,-2.6 1,-0.2 5,-0.2 0.953 109.3 50.1 -57.0 -47.0 6.2 5.0 6.9 29 90 A L H X S+ 0 0 127 -4,-2.6 4,-2.8 -5,-0.2 -1,-0.2 0.957 110.4 50.4 -57.2 -47.2 9.1 2.5 6.8 30 91 A I H X S+ 0 0 68 -4,-2.7 4,-3.3 1,-0.2 5,-0.2 0.945 108.3 52.1 -57.3 -46.9 10.6 4.4 3.9 31 92 A S H X S+ 0 0 60 -4,-2.9 4,-2.8 1,-0.2 5,-0.2 0.960 110.1 48.6 -56.9 -47.5 10.4 7.7 5.7 32 93 A Y H X S+ 0 0 140 -4,-2.6 4,-2.5 -5,-0.2 -1,-0.2 0.960 112.4 48.7 -57.6 -47.7 12.2 6.1 8.7 33 94 A G H X S+ 0 0 29 -4,-2.8 4,-2.5 -5,-0.2 -2,-0.2 0.950 110.7 50.7 -57.7 -47.4 14.9 4.8 6.4 34 95 A I H X S+ 0 0 94 -4,-3.3 4,-2.6 1,-0.2 -1,-0.2 0.949 108.7 51.9 -57.2 -46.8 15.3 8.2 4.7 35 96 A R H < S+ 0 0 115 -4,-2.8 -1,-0.2 -5,-0.2 -2,-0.2 0.947 108.3 51.2 -56.7 -46.6 15.7 9.9 8.1 36 97 A R H < S+ 0 0 191 -4,-2.5 -1,-0.2 -5,-0.2 -2,-0.2 0.954 108.8 51.4 -57.1 -46.8 18.4 7.4 9.1 37 98 A L H < S+ 0 0 144 -4,-2.5 -1,-0.2 -5,-0.2 -2,-0.2 0.948 124.2 27.9 -56.8 -47.0 20.2 8.1 5.8 38 99 A I S < S+ 0 0 109 -4,-2.6 -3,-0.1 -5,-0.2 -2,-0.0 0.678 89.2 94.2 -82.5-113.0 20.1 11.9 6.5 39 100 A K 0 0 120 1,-0.2 -3,-0.0 -5,-0.0 -4,-0.0 0.097 360.0 360.0 47.6-174.8 19.9 13.0 10.2 40 101 A K 0 0 263 0, 0.0 -1,-0.2 0, 0.0 -4,-0.0 0.495 360.0 360.0 66.6 360.0 23.3 13.8 11.8 41 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 42 62 B V 0 0 163 0, 0.0 17,-0.0 0, 0.0 2,-0.0 0.000 360.0 360.0 360.0 59.4 -4.7 -4.2 -8.4 43 63 B Q + 0 0 153 1,-0.1 4,-0.1 2,-0.1 5,-0.0 -0.350 360.0 172.3 -64.9 146.0 -7.2 -6.6 -9.9 44 64 B L + 0 0 135 2,-0.1 -1,-0.1 3,-0.0 0, 0.0 0.276 55.9 90.7-137.7 7.0 -10.8 -5.6 -9.5 45 65 B A S S- 0 0 81 2,-0.0 -2,-0.1 0, 0.0 0, 0.0 0.665 94.5-119.8 -80.2 -13.3 -12.7 -8.1 -11.7 46 66 B H + 0 0 123 1,-0.1 -2,-0.1 0, 0.0 4,-0.1 0.710 67.6 124.0 77.9 114.1 -13.1 -10.4 -8.6 47 67 B H + 0 0 165 -4,-0.1 3,-0.1 2,-0.1 -1,-0.1 0.255 60.4 56.8 168.2 38.0 -11.5 -13.9 -8.8 48 68 B F S S+ 0 0 158 1,-0.2 2,-0.9 -5,-0.0 7,-0.1 0.225 99.1 29.1-142.0 -88.2 -9.1 -14.4 -6.0 49 69 B S - 0 0 12 1,-0.2 -1,-0.2 5,-0.1 6,-0.1 -0.726 57.6-180.0 -88.1 106.0 -10.1 -14.1 -2.3 50 70 B E + 0 0 136 -2,-0.9 -1,-0.2 -3,-0.1 5,-0.0 0.981 63.7 69.2 -68.1 -55.0 -13.8 -15.0 -2.1 51 71 B P S > S- 0 0 67 0, 0.0 4,-1.9 0, 0.0 5,-0.2 -0.151 88.4-122.1 -60.1 156.6 -14.1 -14.5 1.7 52 72 B E H >> S+ 0 0 121 2,-0.2 4,-3.1 1,-0.2 3,-0.9 0.996 109.2 44.1 -66.3 -73.7 -13.8 -10.9 3.1 53 73 B I H 3> S+ 0 0 128 1,-0.3 4,-2.7 2,-0.2 5,-0.4 0.868 114.2 55.0 -39.6 -41.8 -10.8 -11.2 5.5 54 74 B T H 3> S+ 0 0 43 2,-0.2 4,-1.9 1,-0.2 -1,-0.3 0.949 115.8 36.0 -61.4 -46.6 -9.1 -13.3 2.7 55 75 B L H