==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 02-APR-93 1AHD . COMPND 2 MOLECULE: DNA (5'- . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.BILLETER,Y.Q.QIAN,G.OTTING,M.MULLER,W.J.GEHRING,K.WUTHRICH . 68 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6519.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 75.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 8.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 13.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 35 51.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 0 P M 0 0 154 0, 0.0 2,-2.2 0, 0.0 4,-0.2 0.000 360.0 360.0 360.0 74.7 1.8 14.2 16.9 2 1 P R + 0 0 231 2,-0.1 2,-0.1 3,-0.1 0, 0.0 -0.415 360.0 59.4 -75.6 66.5 4.0 11.4 18.4 3 2 P K S S- 0 0 165 -2,-2.2 4,-0.1 5,-0.0 -1,-0.1 -0.395 124.9 -24.5 177.0 120.0 2.9 8.8 15.8 4 3 P R > - 0 0 177 -2,-0.1 3,-2.6 2,-0.1 -2,-0.1 0.888 63.8-162.6 33.6 66.9 3.3 9.2 12.0 5 4 P G T 3 S+ 0 0 34 1,-0.3 3,-0.5 -4,-0.2 -1,-0.1 0.856 85.4 67.5 -35.3 -51.2 3.5 13.0 12.2 6 5 P R T 3 S- 0 0 231 1,-0.3 -1,-0.3 -5,-0.0 2,-0.1 0.766 128.2 -11.9 -19.4 -59.2 2.7 12.8 8.4 7 6 P Q < - 0 0 52 -3,-2.6 2,-0.9 -4,-0.1 -1,-0.3 -0.668 64.1-159.3-170.1 89.5 -0.7 11.5 9.0 8 7 P T - 0 0 57 -3,-0.5 2,-0.8 -2,-0.1 -4,-0.1 -0.761 16.1-149.2 -76.8 110.1 -1.9 10.2 12.4 9 8 P Y - 0 0 59 -2,-0.9 2,-0.2 4,-0.0 -2,-0.0 -0.770 21.9-145.2 -77.9 109.9 -4.8 8.0 11.6 10 9 P T >> - 0 0 77 -2,-0.8 4,-1.8 1,-0.1 3,-1.5 -0.577 19.9-105.2 -81.9 146.8 -7.0 8.4 14.8 11 10 P R H 3> S+ 0 0 185 1,-0.3 4,-1.8 2,-0.2 -1,-0.1 0.758 115.6 58.8 -24.3 -64.9 -9.2 5.8 16.4 12 11 P Y H 3> S+ 0 0 151 2,-0.2 4,-1.2 1,-0.2 5,-0.3 0.867 110.3 43.4 -47.9 -44.4 -12.5 7.2 15.2 13 12 P Q H <> S+ 0 0 24 -3,-1.5 4,-2.0 1,-0.2 5,-0.2 0.982 114.7 50.1 -63.0 -53.7 -11.4 6.8 11.6 14 13 P T H X S+ 0 0 26 -4,-1.8 4,-1.1 1,-0.2 -2,-0.2 0.655 104.2 64.2 -57.6 -20.8 -9.9 3.3 12.4 15 14 P L H X S+ 0 0 65 -4,-1.8 4,-1.4 -5,-0.2 3,-0.2 0.996 111.9 27.0 -67.3 -68.5 -13.3 2.3 14.1 16 15 P E H X S+ 0 0 70 -4,-1.2 4,-3.0 1,-0.2 -2,-0.2 0.832 117.4 61.4 -70.6 -33.3 -15.7 2.4 11.2 17 16 P L H X S+ 0 0 2 -4,-2.0 4,-2.9 -5,-0.3 -1,-0.2 0.888 104.3 49.7 -59.4 -40.8 -13.0 1.7 8.6 18 17 P E H X S+ 0 0 111 -4,-1.1 4,-2.7 -5,-0.2 -1,-0.2 0.906 110.6 50.3 -58.8 -45.8 -12.4 -1.7 10.4 19 18 P K H X S+ 0 0 152 -4,-1.4 4,-1.8 2,-0.2 -2,-0.2 0.945 112.3 46.0 -62.6 -47.7 -16.1 -2.4 10.3 20 19 P E H >X S+ 0 0 51 -4,-3.0 4,-3.1 1,-0.2 3,-0.5 0.970 111.6 52.7 -51.7 -58.4 -16.2 -1.6 6.5 21 20 P F H 3< S+ 0 0 19 -4,-2.9 -2,-0.2 1,-0.3 -1,-0.2 0.872 105.1 55.4 -48.3 -46.2 -13.1 -3.7 6.0 22 21 P H H 3< S+ 0 0 173 -4,-2.7 -1,-0.3 1,-0.2 3,-0.2 0.923 117.7 34.8 -52.3 -49.1 -14.8 -6.6 7.8 23 22 P F H << S+ 0 0 185 -4,-1.8 2,-0.3 -3,-0.5 -2,-0.2 0.883 137.5 6.1 -69.8 -45.1 -17.7 -6.4 5.4 24 23 P N < + 0 0 42 -4,-3.1 -1,-0.2 -5,-0.2 -2,-0.2 -0.825 44.5 174.5-156.3 98.9 -15.8 -5.4 2.2 25 24 P R S S+ 0 0 93 -2,-0.3 2,-0.3 -3,-0.2 -1,-0.1 0.951 83.1 64.7 -63.6 -55.2 -12.0 -5.1 1.7 26 25 P Y S S- 0 0 170 -5,-0.1 2,-0.4 24,-0.0 3,-0.0 -0.588 71.0-170.0 -66.4 126.2 -12.8 -4.5 -2.0 27 26 P L - 0 0 18 -2,-0.3 2,-0.1 2,-0.0 5,-0.1 -0.973 34.3-111.3-107.6 135.1 -14.7 -1.2 -2.6 28 27 P T >> - 0 0 134 -2,-0.4 3,-2.2 1,-0.1 4,-0.6 -0.521 54.4 -95.0 -57.4 136.2 -16.1 -0.7 -6.1 29 28 P R T >4 S+ 0 0 207 1,-0.3 3,-2.2 2,-0.2 4,-0.3 0.753 116.5 40.1 -33.4 -72.3 -13.9 2.2 -7.1 30 29 P R T 3> S+ 0 0 186 1,-0.3 4,-1.2 2,-0.2 -1,-0.3 0.495 96.5 77.5 -74.5 0.3 -15.8 5.4 -6.4 31 30 P R H <> S+ 0 0 95 -3,-2.2 4,-2.2 1,-0.2 -1,-0.3 0.881 87.1 65.3 -64.1 -35.2 -17.2 4.2 -3.1 32 31 P R H S+ 0 0 47 -4,-0.3 4,-2.2 2,-0.2 5,-0.2 0.922 105.1 54.7 -58.4 -47.9 -14.4 8.7 -2.6 34 33 P E H X S+ 0 0 124 -4,-1.2 4,-2.5 1,-0.2 -2,-0.2 0.931 112.0 44.0 -59.1 -44.3 -17.6 8.5 -0.5 35 34 P I H X S+ 0 0 9 -4,-2.2 4,-2.4 1,-0.2 5,-0.3 0.940 108.0 60.3 -56.6 -52.1 -15.6 7.2 2.5 36 35 P A H X>S+ 0 0 3 -4,-2.5 5,-2.4 -5,-0.2 4,-0.9 0.856 112.2 37.1 -51.4 -43.3 -12.8 9.8 1.8 37 36 P H H ><5S+ 0 0 152 -4,-2.2 3,-0.7 3,-0.2 -1,-0.2 0.949 111.6 59.1 -71.7 -50.2 -15.3 12.7 2.3 38 37 P A H 3<5S+ 0 0 70 -4,-2.5 -2,-0.2 1,-0.3 -1,-0.2 0.806 121.7 26.7 -48.7 -36.4 -17.2 11.0 5.1 39 38 P L H 3<5S- 0 0 11 -4,-2.4 -1,-0.3 -5,-0.1 -2,-0.2 0.491 109.0-117.2-106.3 -8.4 -14.0 10.8 7.2 40 39 P S T <<5S+ 0 0 110 -4,-0.9 -3,-0.2 -3,-0.7 2,-0.2 0.944 71.6 121.2 66.5 53.9 -12.0 13.8 5.7 41 40 P L < - 0 0 29 -5,-2.4 2,-0.3 -6,-0.2 -1,-0.2 -0.494 66.2 -93.7-120.5-172.3 -9.1 11.9 4.2 42 41 P T > - 0 0 77 -2,-0.2 4,-1.5 1,-0.1 3,-0.4 -0.850 32.0-112.5-107.8 151.4 -7.8 11.7 0.5 43 42 P E H >> S+ 0 0 114 -2,-0.3 4,-1.6 1,-0.2 3,-0.6 0.903 118.3 59.8 -45.0 -50.8 -8.9 8.9 -1.9 44 43 P R H >> S+ 0 0 177 1,-0.2 4,-2.7 2,-0.2 3,-1.0 0.916 102.9 49.8 -36.2 -60.6 -5.3 7.7 -1.8 45 44 P Q H 3> S+ 0 0 45 -3,-0.4 4,-2.8 1,-0.3 5,-0.3 0.807 105.1 56.4 -64.1 -32.4 -5.5 7.1 1.9 46 45 P I H X S+ 0 0 134 -4,-1.6 4,-2.1 1,-0.2 3,-0.6 0.949 113.1 63.3 -68.9 -50.3 -0.8 -8.2 6.5 57 56 P W H 3X S+ 0 0 88 -4,-3.0 4,-3.1 -5,-0.3 -2,-0.2 0.820 97.7 58.9 -43.9 -40.7 -4.3 -9.7 7.0 58 57 P K H 3< S+ 0 0 90 -4,-2.7 -1,-0.3 1,-0.2 -2,-0.2 0.957 109.1 42.2 -57.3 -53.2 -3.6 -12.3 4.3 59 58 P K H << S+ 0 0 151 -4,-1.0 4,-0.4 -3,-0.6 -1,-0.2 0.898 124.0 39.8 -56.5 -42.9 -0.5 -13.6 6.2 60 59 P E H < S+ 0 0 134 -4,-2.1 2,-2.4 1,-0.2 -2,-0.2 0.872 89.8 82.6 -78.2 -45.4 -2.4 -13.5 9.5 61 60 P N S < S- 0 0 49 -4,-3.1 -1,-0.2 1,-0.2 -2,-0.1 -0.305 113.3 -77.3 -86.6 64.9 -6.1 -14.6 9.0 62 61 P K + 0 0 186 -2,-2.4 2,-0.7 1,-0.2 -1,-0.2 0.926 67.8 168.5 53.8 59.0 -5.8 -18.4 9.2 63 62 P T + 0 0 47 -4,-0.4 3,-0.2 -5,-0.2 -1,-0.2 -0.524 6.9 155.2-105.3 65.4 -4.4 -19.0 5.7 64 63 P K + 0 0 192 -2,-0.7 2,-1.7 1,-0.2 0, 0.0 -0.210 62.3 46.6 -67.2 176.3 -3.4 -22.6 5.6 65 64 P G S S+ 0 0 81 1,-0.2 3,-0.2 3,-0.1 -1,-0.2 -0.205 79.2 133.5 79.0 -45.5 -3.3 -24.2 2.2 66 65 P E S S- 0 0 83 -2,-1.7 -1,-0.2 -3,-0.2 -3,-0.0 -0.050 78.4 -86.3 -28.9 118.5 -1.4 -21.1 1.0 67 66 P P 0 0 130 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 -0.143 360.0 360.0 -45.1 123.5 1.6 -22.4 -1.1 68 67 P G 0 0 128 -3,-0.2 -2,-0.1 0, 0.0 -3,-0.1 0.482 360.0 360.0 129.7 360.0 4.4 -23.1 1.4