==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 20-APR-97 1AIK . COMPND 2 MOLECULE: HIV-1 GP41 GLYCOPROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HIV-1 M:B_HXB2R; . AUTHOR D.C.CHAN,D.FASS,J.M.BERGER,P.S.KIM . 70 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5760.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 88.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 60 85.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 546 N S > 0 0 117 0, 0.0 4,-2.7 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 -42.1 16.9 14.4 -16.9 2 547 N G H > + 0 0 4 1,-0.2 4,-2.8 2,-0.2 64,-0.1 0.808 360.0 50.4 -64.3 -33.5 17.2 11.4 -14.6 3 548 N I H > S+ 0 0 105 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.899 112.4 44.5 -68.1 -48.8 20.6 12.8 -13.4 4 549 N V H > S+ 0 0 100 2,-0.2 4,-1.5 1,-0.2 -2,-0.2 0.878 115.6 49.9 -62.0 -40.1 19.1 16.3 -12.8 5 550 N Q H X S+ 0 0 71 -4,-2.7 4,-2.0 2,-0.2 3,-0.2 0.946 111.0 47.8 -61.4 -50.5 16.2 14.5 -11.1 6 551 N Q H X S+ 0 0 20 -4,-2.8 4,-2.8 1,-0.2 -2,-0.2 0.900 108.4 56.4 -60.4 -40.3 18.6 12.4 -8.9 7 552 N Q H X S+ 0 0 121 -4,-2.5 4,-2.8 2,-0.2 -1,-0.2 0.869 106.5 49.4 -59.9 -37.7 20.5 15.6 -8.0 8 553 N N H X S+ 0 0 71 -4,-1.5 4,-2.4 -3,-0.2 -1,-0.2 0.915 110.6 50.1 -67.1 -41.1 17.4 17.1 -6.7 9 554 N N H X S+ 0 0 0 -4,-2.0 4,-1.9 2,-0.2 -2,-0.2 0.913 113.0 46.3 -66.7 -37.4 16.7 13.9 -4.7 10 555 N L H X S+ 0 0 81 -4,-2.8 4,-2.4 2,-0.2 5,-0.2 0.957 111.7 50.7 -68.6 -49.3 20.3 14.1 -3.3 11 556 N L H X S+ 0 0 91 -4,-2.8 4,-2.3 1,-0.2 5,-0.2 0.896 110.5 49.3 -56.2 -43.4 20.1 17.8 -2.5 12 557 N R H X S+ 0 0 88 -4,-2.4 4,-2.6 2,-0.2 -1,-0.2 0.929 109.8 52.8 -66.4 -34.7 16.8 17.3 -0.7 13 558 N A H X S+ 0 0 13 -4,-1.9 4,-2.4 1,-0.2 -2,-0.2 0.920 109.9 47.5 -65.6 -40.4 18.4 14.4 1.2 14 559 N I H X S+ 0 0 103 -4,-2.4 4,-2.2 2,-0.2 -1,-0.2 0.890 112.1 49.8 -66.4 -41.1 21.3 16.6 2.3 15 560 N E H X S+ 0 0 102 -4,-2.3 4,-1.9 2,-0.2 -2,-0.2 0.936 110.9 49.9 -67.8 -38.4 18.9 19.4 3.4 16 561 N A H X S+ 0 0 3 -4,-2.6 4,-1.9 1,-0.2 -2,-0.2 0.954 111.9 48.5 -65.0 -39.9 16.9 16.9 5.4 17 562 N Q H X S+ 0 0 93 -4,-2.4 4,-2.8 1,-0.3 -1,-0.2 0.834 104.0 59.9 -70.3 -30.4 20.0 15.7 7.0 18 563 N Q H X S+ 0 0 81 -4,-2.2 4,-2.3 2,-0.2 -1,-0.3 0.906 104.2 50.5 -63.2 -42.5 21.1 19.2 7.8 19 564 N H H X S+ 0 0 77 -4,-1.9 4,-2.0 2,-0.2 -2,-0.2 0.938 110.4 49.5 -59.9 -43.3 17.9 19.6 9.8 20 565 N L H X S+ 0 0 42 -4,-1.9 4,-2.6 2,-0.2 -2,-0.2 0.902 108.5 53.6 -58.2 -43.5 18.7 16.4 11.6 21 566 N L H X S+ 0 0 96 -4,-2.8 4,-2.1 1,-0.2 -2,-0.2 0.932 109.5 48.4 -58.6 -42.9 22.3 17.7 12.2 22 567 N Q H X S+ 0 0 104 -4,-2.3 4,-2.6 2,-0.2 -1,-0.2 0.892 110.0 52.2 -64.6 -34.1 20.8 20.9 13.8 23 568 N L H X S+ 0 0 24 -4,-2.0 4,-2.2 1,-0.2 -2,-0.2 0.946 108.7 48.5 -74.1 -41.8 18.5 18.9 16.0 24 569 N T H X S+ 0 0 62 -4,-2.6 4,-2.8 2,-0.2 -1,-0.2 0.902 111.2 51.7 -63.5 -36.4 21.3 16.7 17.3 25 570 N V H X S+ 0 0 50 -4,-2.1 4,-2.9 1,-0.2 5,-0.3 0.914 108.5 50.4 -66.6 -42.3 23.4 19.9 18.1 26 571 N W H X S+ 0 0 96 -4,-2.6 4,-2.2 2,-0.2 -1,-0.2 0.916 111.4 49.6 -58.6 -40.4 20.4 21.4 19.9 27 572 N G H X S+ 0 0 6 -4,-2.2 4,-2.4 1,-0.2 -2,-0.2 0.948 112.1 47.7 -65.5 -43.8 20.3 18.0 21.9 28 573 N I H X S+ 0 0 112 -4,-2.8 4,-2.8 2,-0.2 -2,-0.2 0.917 111.9 47.6 -63.4 -48.8 24.0 18.2 22.7 29 574 N K H X S+ 0 0 140 -4,-2.9 4,-2.3 2,-0.2 -1,-0.2 0.909 111.4 52.7 -64.4 -38.2 24.0 21.8 23.8 30 575 N Q H X S+ 0 0 55 -4,-2.2 4,-0.9 -5,-0.3 -2,-0.2 0.946 113.7 41.6 -59.6 -47.7 20.9 21.2 26.0 31 576 N L H >< S+ 0 0 91 -4,-2.4 3,-0.5 1,-0.2 4,-0.4 0.913 114.2 53.2 -70.7 -35.2 22.6 18.2 27.7 32 577 N Q H >< S+ 0 0 99 -4,-2.8 3,-1.0 1,-0.2 -2,-0.2 0.856 100.3 60.7 -66.3 -33.8 25.9 20.1 27.9 33 578 N A H 3< S+ 0 0 68 -4,-2.3 3,-0.5 1,-0.3 -1,-0.2 0.818 111.8 40.2 -64.2 -29.0 24.3 23.1 29.6 34 579 N R T << S+ 0 0 171 -4,-0.9 -1,-0.3 -3,-0.5 -2,-0.2 0.427 119.4 43.4 -97.9 -2.6 23.3 20.8 32.5 35 580 N I < 0 0 116 -3,-1.0 -1,-0.2 -4,-0.4 -2,-0.1 -0.361 360.0 360.0-138.0 37.8 26.4 18.8 32.7 36 581 N L 0 0 172 -3,-0.5 -3,-0.0 -5,-0.0 -4,-0.0 -0.933 360.0 360.0 177.3 360.0 28.9 21.7 32.3 37 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 38 628 C W > 0 0 109 0, 0.0 4,-2.0 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 -24.2 12.3 17.3 24.2 39 629 C M H > + 0 0 139 2,-0.2 4,-2.0 1,-0.2 5,-0.2 0.931 360.0 49.3 -76.1 -33.1 9.0 15.9 22.9 40 630 C E H > S+ 0 0 99 2,-0.2 4,-3.0 1,-0.2 5,-0.2 0.903 108.7 52.8 -66.5 -39.2 9.2 18.4 20.0 41 631 C W H > S+ 0 0 60 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.940 108.5 51.9 -62.3 -42.0 12.8 17.4 19.3 42 632 C D H X S+ 0 0 83 -4,-2.0 4,-1.7 2,-0.2 -1,-0.2 0.904 112.1 43.9 -60.4 -44.7 11.6 13.7 19.2 43 633 C R H X S+ 0 0 150 -4,-2.0 4,-3.0 2,-0.2 -1,-0.2 0.938 114.8 49.3 -71.3 -41.9 8.8 14.5 16.6 44 634 C E H X S+ 0 0 56 -4,-3.0 4,-2.0 1,-0.2 5,-0.2 0.880 109.8 53.1 -65.2 -32.7 11.2 16.7 14.6 45 635 C I H X S+ 0 0 27 -4,-2.7 4,-1.7 -5,-0.2 -1,-0.2 0.867 113.9 41.4 -69.2 -34.9 13.8 13.9 14.7 46 636 C N H X S+ 0 0 90 -4,-1.7 4,-2.5 -5,-0.2 -2,-0.2 0.922 111.3 56.7 -83.5 -34.7 11.3 11.3 13.3 47 637 C N H X S+ 0 0 102 -4,-3.0 4,-1.7 2,-0.2 -2,-0.2 0.876 112.9 39.8 -57.3 -49.2 9.8 13.8 10.8 48 638 C Y H X S+ 0 0 57 -4,-2.0 4,-2.6 2,-0.2 5,-0.2 0.889 112.5 56.5 -73.5 -34.9 13.1 14.4 9.2 49 639 C T H X S+ 0 0 46 -4,-1.7 4,-2.3 -5,-0.2 -2,-0.2 0.879 108.0 48.3 -62.0 -37.5 14.1 10.8 9.5 50 640 C S H X S+ 0 0 75 -4,-2.5 4,-2.1 2,-0.2 -1,-0.2 0.915 111.8 48.3 -69.3 -40.8 11.0 9.7 7.5 51 641 C L H X S+ 0 0 83 -4,-1.7 4,-2.6 2,-0.2 -2,-0.2 0.909 112.7 49.9 -63.9 -38.7 11.6 12.4 4.8 52 642 C I H X S+ 0 0 8 -4,-2.6 4,-2.8 1,-0.2 5,-0.3 0.904 109.2 51.6 -70.8 -38.7 15.3 11.2 4.5 53 643 C H H X S+ 0 0 119 -4,-2.3 4,-2.2 -5,-0.2 -1,-0.2 0.921 111.0 47.0 -60.9 -43.1 14.2 7.6 4.3 54 644 C S H X S+ 0 0 62 -4,-2.1 4,-2.8 2,-0.2 -2,-0.2 0.916 114.8 46.6 -64.6 -41.4 11.8 8.4 1.5 55 645 C L H X S+ 0 0 6 -4,-2.6 4,-2.6 2,-0.2 -2,-0.2 0.905 112.0 49.9 -71.5 -34.9 14.5 10.4 -0.4 56 646 C I H X S+ 0 0 72 -4,-2.8 4,-2.1 2,-0.2 -1,-0.2 0.915 115.0 45.6 -67.2 -38.6 17.2 7.7 0.1 57 647 C E H X S+ 0 0 117 -4,-2.2 4,-1.9 -5,-0.3 -2,-0.2 0.924 112.8 48.8 -69.8 -43.7 14.7 5.2 -1.2 58 648 C E H X S+ 0 0 69 -4,-2.8 4,-2.6 2,-0.2 -2,-0.2 0.918 113.4 48.5 -61.4 -43.4 13.6 7.4 -4.2 59 649 C S H X S+ 0 0 11 -4,-2.6 4,-2.6 2,-0.2 -2,-0.2 0.880 106.6 55.9 -63.2 -39.9 17.3 8.0 -5.0 60 650 C Q H X S+ 0 0 117 -4,-2.1 4,-1.5 2,-0.2 -1,-0.2 0.871 111.9 44.6 -57.4 -39.4 18.0 4.3 -4.8 61 651 C N H X S+ 0 0 82 -4,-1.9 4,-2.6 2,-0.2 5,-0.2 0.935 112.9 48.2 -75.4 -46.7 15.3 3.8 -7.4 62 652 C Q H X S+ 0 0 28 -4,-2.6 4,-2.7 1,-0.2 5,-0.2 0.875 107.3 59.1 -63.5 -32.2 16.4 6.6 -9.7 63 653 C Q H X S+ 0 0 87 -4,-2.6 4,-2.5 2,-0.2 -1,-0.2 0.947 109.0 43.1 -61.7 -44.6 19.9 5.3 -9.4 64 654 C E H X S+ 0 0 111 -4,-1.5 4,-2.7 2,-0.2 -2,-0.2 0.940 116.3 47.9 -64.8 -45.0 18.8 1.9 -10.9 65 655 C K H X S+ 0 0 123 -4,-2.6 4,-2.3 2,-0.2 -2,-0.2 0.893 112.7 48.1 -62.2 -41.3 16.6 3.7 -13.6 66 656 C N H X S+ 0 0 20 -4,-2.7 4,-1.5 2,-0.2 -1,-0.2 0.941 111.2 50.4 -70.1 -42.1 19.5 6.1 -14.5 67 657 C E H X S+ 0 0 109 -4,-2.5 4,-1.2 -5,-0.2 3,-0.3 0.914 111.1 50.2 -62.0 -40.6 21.9 3.2 -14.8 68 658 C Q H < S+ 0 0 131 -4,-2.7 3,-0.5 1,-0.2 -2,-0.2 0.902 109.2 51.3 -60.0 -43.0 19.4 1.3 -17.0 69 659 C E H < S+ 0 0 134 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.709 103.3 58.7 -69.9 -28.3 19.0 4.4 -19.2 70 660 C L H < 0 0 147 -4,-1.5 -1,-0.2 -3,-0.3 -2,-0.2 0.863 360.0 360.0 -65.0 -35.3 22.7 4.7 -19.7 71 661 C L < 0 0 186 -4,-1.2 0, 0.0 -3,-0.5 0, 0.0 -0.429 360.0 360.0 -78.0 360.0 22.9 1.1 -21.1