==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 01-AUG-05 2AIU . COMPND 2 MOLECULE: CYTOCHROME C, TESTIS-SPECIFIC; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR Z.LIU,S.YE,H.LIN,Z.RAO,X.J.LIU . 104 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6216.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 58.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 36 34.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A G 0 0 76 0, 0.0 2,-0.6 0, 0.0 92,-0.2 0.000 360.0 360.0 360.0 142.6 -7.0 6.0 17.1 2 3 A D > - 0 0 78 87,-0.3 4,-2.3 1,-0.1 95,-0.2 -0.906 360.0-170.8-117.1 102.5 -9.1 8.9 18.4 3 4 A A H > S+ 0 0 16 -2,-0.6 4,-2.4 1,-0.2 -1,-0.1 0.796 85.7 57.9 -61.8 -33.5 -10.3 11.2 15.5 4 5 A E H > S+ 0 0 95 2,-0.2 4,-1.2 1,-0.2 -1,-0.2 0.926 110.8 42.2 -65.6 -44.2 -11.7 13.8 17.9 5 6 A A H > S+ 0 0 26 1,-0.2 4,-1.8 2,-0.2 -2,-0.2 0.897 113.8 55.3 -65.5 -37.8 -8.3 14.2 19.6 6 7 A G H X S+ 0 0 0 -4,-2.3 4,-2.5 87,-0.3 -2,-0.2 0.863 99.5 58.8 -61.7 -39.9 -6.8 14.1 16.1 7 8 A K H X S+ 0 0 82 -4,-2.4 4,-1.9 1,-0.2 -1,-0.2 0.906 106.8 47.7 -57.4 -41.6 -8.9 16.9 14.9 8 9 A K H X S+ 0 0 136 -4,-1.2 4,-2.2 1,-0.2 -1,-0.2 0.881 110.4 51.5 -69.5 -38.1 -7.5 19.2 17.6 9 10 A I H X S+ 0 0 20 -4,-1.8 4,-2.8 1,-0.2 5,-0.5 0.913 107.4 54.4 -63.5 -40.2 -3.9 18.2 16.8 10 11 A F H X>S+ 0 0 13 -4,-2.5 5,-2.6 1,-0.2 4,-2.6 0.924 109.8 45.9 -59.2 -46.2 -4.5 19.0 13.1 11 12 A V H <5S+ 0 0 97 -4,-1.9 5,-0.3 3,-0.2 -1,-0.2 0.923 115.4 47.1 -64.0 -43.5 -5.7 22.5 13.9 12 13 A Q H <5S+ 0 0 147 -4,-2.2 -2,-0.2 -5,-0.2 -1,-0.2 0.889 131.4 13.4 -66.3 -40.0 -2.8 23.1 16.3 13 14 A K H <5S+ 0 0 59 -4,-2.8 -3,-0.2 -5,-0.2 -2,-0.2 0.641 132.3 28.0-116.1 -16.1 0.0 21.8 14.1 14 15 A C T >X5S+ 0 0 22 -4,-2.6 3,-2.0 -5,-0.5 4,-1.4 0.740 93.7 77.2-119.4 -32.9 -1.1 21.3 10.5 15 16 A A T 34 S- 0 0 97 1,-0.1 3,-2.0 12,-0.1 12,-0.4 -0.220 83.5 -84.3 -74.3 160.6 -11.7 18.8 2.8 22 23 A K T 3 S+ 0 0 141 82,-0.4 -1,-0.1 1,-0.3 3,-0.1 -0.443 116.7 9.1 -64.7 130.7 -12.8 17.9 -0.7 23 24 A G T 3 S+ 0 0 76 1,-0.2 -1,-0.3 -2,-0.2 -2,-0.1 0.409 95.8 153.5 79.0 -0.0 -12.2 20.9 -3.0 24 25 A G < - 0 0 14 -3,-2.0 -1,-0.2 1,-0.1 7,-0.2 -0.174 46.6 -93.8 -63.2 155.6 -10.2 22.7 -0.3 25 26 A K - 0 0 155 -3,-0.1 -6,-0.4 1,-0.1 2,-0.3 -0.297 24.7-122.6 -71.9 146.5 -7.5 25.2 -1.2 26 27 A H + 0 0 71 4,-0.1 2,-0.1 5,-0.1 -8,-0.1 -0.661 40.1 167.1 -79.0 145.2 -3.8 24.5 -1.6 27 28 A K - 0 0 113 2,-2.6 -10,-0.1 -10,-0.5 -9,-0.1 -0.193 68.2 -36.5-130.4-135.2 -1.9 26.8 0.8 28 29 A T S S+ 0 0 107 -12,-0.4 -10,-0.1 -2,-0.1 -11,-0.1 0.944 140.0 31.6 -59.9 -40.4 1.8 26.5 1.7 29 30 A G S S- 0 0 9 -12,-2.4 -2,-2.6 1,-0.1 -10,-0.2 -0.640 105.3 -81.7-109.6 168.9 1.2 22.8 1.5 30 31 A P - 0 0 14 0, 0.0 -11,-0.2 0, 0.0 2,-0.1 -0.328 42.3-104.9 -70.7 145.8 -1.2 20.7 -0.6 31 32 A N - 0 0 16 -7,-0.2 -11,-0.2 13,-0.2 -5,-0.1 -0.512 35.5-145.8 -60.3 140.6 -4.9 20.2 0.2 32 33 A L > + 0 0 20 -13,-2.6 3,-1.8 -2,-0.1 -12,-0.2 0.307 46.9 136.0-101.0 10.9 -4.8 16.6 1.4 33 34 A W T 3 S+ 0 0 84 -12,-0.4 70,-0.2 1,-0.3 69,-0.1 -0.348 76.0 18.8 -61.4 134.9 -8.1 15.2 0.2 34 35 A G T 3 S+ 0 0 27 68,-2.7 -1,-0.3 -14,-0.2 69,-0.1 0.526 83.7 134.9 85.3 4.7 -7.8 11.7 -1.3 35 36 A L X + 0 0 10 -3,-1.8 3,-1.6 63,-0.1 24,-0.3 0.845 40.9 89.5 -53.9 -42.9 -4.4 11.2 0.4 36 37 A F T 3 S+ 0 0 44 1,-0.3 24,-0.2 62,-0.2 3,-0.1 -0.378 99.0 8.7 -71.5 136.0 -5.0 7.6 1.7 37 38 A G T 3 S+ 0 0 59 22,-3.0 2,-0.3 1,-0.3 -1,-0.3 0.500 105.4 115.7 77.0 9.1 -4.1 4.7 -0.6 38 39 A R S < S- 0 0 43 -3,-1.6 21,-2.6 21,-0.3 -1,-0.3 -0.839 70.5-107.9-113.3 145.9 -2.4 7.2 -3.0 39 40 A K B -A 58 0A 105 -2,-0.3 3,-0.5 19,-0.2 19,-0.2 -0.298 51.6 -82.9 -67.1 154.6 1.3 7.4 -4.0 40 41 A T S S+ 0 0 2 17,-1.9 -1,-0.1 1,-0.2 16,-0.1 -0.179 106.3 22.0 -59.4 149.2 3.3 10.3 -2.6 41 42 A G S S+ 0 0 14 -3,-0.1 -1,-0.2 1,-0.1 7,-0.2 0.824 84.6 117.4 65.8 42.5 3.2 13.7 -4.4 42 43 A Q + 0 0 102 -3,-0.5 -2,-0.1 2,-0.1 -3,-0.1 0.278 20.4 131.6-125.9 12.0 -0.0 13.4 -6.3 43 44 A A > - 0 0 7 1,-0.1 3,-1.5 2,-0.1 5,-0.1 -0.453 69.7-102.5 -61.9 132.7 -2.5 16.0 -5.0 44 45 A P T 3 S+ 0 0 105 0, 0.0 -13,-0.2 0, 0.0 -1,-0.1 -0.338 95.4 3.4 -62.4 134.4 -3.9 17.6 -8.2 45 46 A G T 3 S+ 0 0 78 1,-0.2 2,-0.4 -2,-0.1 -19,-0.1 0.555 93.8 123.7 74.2 8.4 -2.4 21.0 -9.1 46 47 A F < - 0 0 36 -3,-1.5 2,-1.0 -15,-0.1 -1,-0.2 -0.877 59.4-131.9-104.7 139.8 0.1 21.3 -6.4 47 48 A S - 0 0 97 -2,-0.4 2,-0.1 -3,-0.1 -6,-0.0 -0.772 33.3-172.9 -91.1 99.1 3.8 21.9 -7.2 48 49 A Y - 0 0 30 -2,-1.0 2,-0.1 -7,-0.2 30,-0.0 -0.420 28.1-102.2 -87.6 163.7 5.8 19.4 -5.2 49 50 A T > - 0 0 31 1,-0.1 4,-2.2 -2,-0.1 5,-0.2 -0.442 35.9-112.3 -74.4 159.2 9.5 19.0 -4.7 50 51 A D H > S+ 0 0 108 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.901 118.9 59.4 -58.9 -35.8 11.1 16.2 -6.7 51 52 A A H > S+ 0 0 30 26,-0.3 4,-1.2 1,-0.2 -1,-0.2 0.935 106.8 43.3 -59.8 -47.6 11.8 14.5 -3.4 52 53 A N H 4 S+ 0 0 21 1,-0.2 4,-0.4 2,-0.2 3,-0.3 0.881 116.4 49.3 -66.3 -35.5 8.1 14.4 -2.4 53 54 A K H < S+ 0 0 86 -4,-2.2 3,-0.3 1,-0.2 -2,-0.2 0.887 116.5 41.9 -69.8 -34.3 7.2 13.3 -5.9 54 55 A N H < S+ 0 0 125 -4,-2.8 -1,-0.2 -5,-0.2 -2,-0.2 0.497 78.6 98.7 -94.2 -5.2 9.8 10.6 -5.9 55 56 A K < - 0 0 80 -4,-1.2 -1,-0.2 -3,-0.3 -2,-0.1 0.916 69.3-158.7 -50.9 -47.1 9.5 9.0 -2.4 56 57 A G + 0 0 40 -4,-0.4 -1,-0.1 -3,-0.3 2,-0.1 0.305 40.8 122.0 93.6 -8.9 7.4 6.3 -4.1 57 58 A V - 0 0 41 -18,-0.1 -17,-1.9 1,-0.1 2,-0.5 -0.339 63.9-112.2 -85.7 168.6 5.5 4.8 -1.2 58 59 A I B -A 39 0A 87 -19,-0.2 2,-0.3 -2,-0.1 5,-0.3 -0.864 33.7-120.2 -99.5 127.7 1.7 4.6 -0.8 59 60 A W + 0 0 10 -21,-2.6 -22,-3.0 -2,-0.5 -21,-0.3 -0.544 56.4 128.5 -70.5 133.3 0.3 6.8 1.9 60 61 A S S > S- 0 0 43 -2,-0.3 4,-2.8 -24,-0.2 5,-0.3 -0.907 74.8 -69.5-165.1-179.4 -1.5 4.8 4.6 61 62 A E H > S+ 0 0 93 -2,-0.3 4,-2.3 1,-0.2 5,-0.2 0.929 128.8 48.5 -50.4 -52.3 -1.4 4.5 8.3 62 63 A E H > S+ 0 0 147 1,-0.2 4,-1.4 2,-0.2 -1,-0.2 0.907 115.3 41.3 -57.8 -48.5 2.0 2.9 8.4 63 64 A T H > S+ 0 0 15 -5,-0.3 4,-2.9 1,-0.2 -1,-0.2 0.875 114.9 51.0 -71.7 -34.9 3.8 5.3 6.1 64 65 A L H X S+ 0 0 6 -4,-2.8 4,-2.5 1,-0.2 -1,-0.2 0.833 105.1 58.5 -69.1 -34.7 2.2 8.4 7.6 65 66 A M H X S+ 0 0 35 -4,-2.3 4,-0.7 -5,-0.3 -1,-0.2 0.930 112.7 39.2 -60.6 -41.4 3.2 7.2 11.1 66 67 A E H >X S+ 0 0 114 -4,-1.4 4,-1.1 -5,-0.2 3,-0.7 0.955 117.3 48.8 -73.5 -48.4 6.8 7.1 10.0 67 68 A Y H >< S+ 0 0 16 -4,-2.9 3,-0.9 1,-0.2 7,-0.3 0.944 109.8 50.2 -55.9 -52.3 6.7 10.3 7.9 68 69 A L H 3< S+ 0 0 16 -4,-2.5 17,-2.8 1,-0.2 -1,-0.2 0.704 100.5 64.4 -64.7 -18.7 4.9 12.4 10.6 69 70 A E H << S- 0 0 77 -4,-0.7 -1,-0.2 -3,-0.7 -2,-0.2 0.868 131.9 -5.5 -71.1 -34.7 7.5 11.4 13.3 70 71 A N XX - 0 0 57 -4,-1.1 4,-2.1 -3,-0.9 3,-0.5 -0.605 68.7-169.2-160.8 89.0 10.2 13.2 11.3 71 72 A P H 3> S+ 0 0 0 0, 0.0 4,-2.7 0, 0.0 7,-0.1 0.903 86.3 45.8 -49.8 -51.1 9.2 14.6 7.9 72 73 A K H 34 S+ 0 0 150 10,-0.4 6,-0.2 1,-0.2 5,-0.1 0.770 109.5 55.4 -72.2 -21.3 12.7 15.4 6.5 73 74 A K H <4 S+ 0 0 158 -3,-0.5 -1,-0.2 -6,-0.2 -6,-0.1 0.932 114.0 40.4 -70.7 -43.1 14.2 12.1 7.6 74 75 A Y H < S+ 0 0 19 -4,-2.1 -2,-0.2 -7,-0.3 -1,-0.2 0.868 132.2 25.5 -71.5 -38.7 11.5 10.2 5.7 75 76 A I S >< S- 0 0 2 -4,-2.7 3,-2.0 -5,-0.2 -1,-0.3 -0.699 80.6-160.2-128.7 78.1 11.6 12.6 2.7 76 77 A P T 3 S+ 0 0 92 0, 0.0 -3,-0.1 0, 0.0 -4,-0.1 -0.376 82.2 29.4 -58.6 132.8 15.1 14.3 2.5 77 78 A G T 3 S+ 0 0 60 1,-0.3 -26,-0.3 -5,-0.1 -25,-0.2 0.428 86.8 149.9 94.1 -0.5 14.8 17.5 0.4 78 79 A T < - 0 0 14 -3,-2.0 -1,-0.3 -6,-0.2 -6,-0.0 -0.282 45.5-147.8 -62.9 152.1 11.1 18.1 1.4 79 80 A K S S+ 0 0 108 2,-0.1 2,-1.1 -30,-0.0 -1,-0.1 0.280 71.7 106.6-102.2 7.5 9.8 21.6 1.4 80 81 A M - 0 0 46 2,-0.1 2,-1.1 -9,-0.1 -2,-0.1 -0.788 60.4-162.3 -83.0 105.3 7.4 20.7 4.2 81 82 A I + 0 0 149 -2,-1.1 2,-0.3 -10,-0.1 -2,-0.1 -0.758 39.4 120.6 -97.7 94.9 9.3 22.4 7.0 82 83 A F - 0 0 62 -2,-1.1 -10,-0.4 1,-0.1 -2,-0.1 -0.936 60.4-133.3-158.9 132.7 8.0 20.9 10.2 83 84 A A - 0 0 86 -2,-0.3 2,-0.2 1,-0.2 -11,-0.1 0.760 48.3-124.0 -60.7 -33.4 9.7 19.0 13.0 84 85 A G - 0 0 15 -14,-0.2 2,-0.6 -13,-0.1 -15,-0.3 -0.454 24.0 -77.0 110.3 172.9 7.2 16.1 13.3 85 86 A I - 0 0 3 -17,-2.8 6,-0.1 -2,-0.2 -15,-0.0 -0.964 33.8-166.9-118.2 110.2 5.2 14.7 16.1 86 87 A K + 0 0 165 -2,-0.6 2,-0.2 4,-0.1 -1,-0.1 0.882 61.5 89.2 -61.8 -46.8 7.2 12.6 18.5 87 88 A K > - 0 0 133 1,-0.1 4,-2.2 2,-0.1 5,-0.2 -0.381 62.2-154.7 -65.0 124.2 4.3 10.9 20.3 88 89 A K H > S+ 0 0 132 -2,-0.2 4,-2.8 2,-0.2 5,-0.2 0.930 96.9 52.3 -60.4 -46.6 3.0 7.7 18.8 89 90 A S H > S+ 0 0 61 1,-0.2 4,-2.4 2,-0.2 -87,-0.3 0.908 109.8 48.6 -57.8 -45.1 -0.4 8.2 20.4 90 91 A E H > S+ 0 0 44 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.893 111.3 49.0 -64.6 -41.9 -0.7 11.7 18.9 91 92 A R H X S+ 0 0 32 -4,-2.2 4,-2.9 2,-0.2 5,-0.2 0.925 111.0 50.9 -64.9 -41.8 0.3 10.5 15.5 92 93 A E H X S+ 0 0 79 -4,-2.8 4,-2.1 2,-0.2 -2,-0.2 0.927 113.1 45.0 -60.4 -45.3 -2.2 7.7 15.6 93 94 A D H X S+ 0 0 32 -4,-2.4 4,-2.2 2,-0.2 -87,-0.3 0.939 114.0 49.2 -64.0 -46.4 -5.0 10.1 16.7 94 95 A L H X S+ 0 0 0 -4,-2.6 4,-2.7 1,-0.2 -2,-0.2 0.928 111.8 48.4 -57.8 -47.0 -4.0 12.7 14.0 95 96 A I H X S+ 0 0 4 -4,-2.9 4,-2.6 1,-0.2 -1,-0.2 0.878 107.5 55.8 -62.9 -37.9 -3.9 10.0 11.3 96 97 A K H X S+ 0 0 65 -4,-2.1 4,-1.9 -5,-0.2 -1,-0.2 0.920 110.9 45.2 -57.9 -45.8 -7.3 8.7 12.4 97 98 A Y H X S+ 0 0 31 -4,-2.2 4,-3.1 -95,-0.2 5,-0.3 0.936 111.7 52.0 -63.9 -48.0 -8.7 12.2 11.9 98 99 A L H X S+ 0 0 9 -4,-2.7 4,-2.4 1,-0.2 -2,-0.2 0.880 106.5 53.4 -57.8 -40.3 -6.9 12.6 8.5 99 100 A K H X S+ 0 0 84 -4,-2.6 4,-0.6 2,-0.2 -1,-0.2 0.936 114.3 42.7 -61.1 -43.9 -8.3 9.3 7.2 100 101 A Q H >X S+ 0 0 98 -4,-1.9 3,-0.9 -5,-0.2 4,-0.5 0.971 118.3 42.4 -66.4 -54.0 -11.8 10.5 8.1 101 102 A A H 3< S+ 0 0 18 -4,-3.1 3,-0.3 1,-0.2 -79,-0.2 0.808 116.8 45.5 -66.9 -31.0 -11.5 14.1 6.8 102 103 A T H 3< S+ 0 0 0 -4,-2.4 -68,-2.7 -5,-0.3 -1,-0.2 0.479 112.5 51.3 -92.3 -2.5 -9.6 13.4 3.6 103 104 A S H << 0 0 71 -3,-0.9 -1,-0.2 -4,-0.6 -2,-0.2 0.368 360.0 360.0-114.0 3.4 -11.9 10.4 2.5 104 105 A S < 0 0 120 -4,-0.5 -82,-0.4 -3,-0.3 -70,-0.1 -0.820 360.0 360.0-145.8 360.0 -15.3 12.0 2.8