==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 01-AUG-05 2AIZ . COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN P6; . SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; . AUTHOR L.M.PARSONS,F.LIN,J.ORBAN,STRUCTURE 2 FUNCTION PROJECT (S2F) . 139 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8214.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 91 65.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 6 4.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 12 8.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 16 11.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 9.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 41 29.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 P C 0 0 165 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -48.7 185.5 -6.4 21.0 2 2 P S + 0 0 98 1,-0.1 0, 0.0 2,-0.0 0, 0.0 0.304 360.0 66.6 58.7 163.3 186.1 -3.7 18.5 3 3 P S + 0 0 114 1,-0.1 -1,-0.1 9,-0.1 9,-0.0 0.873 59.3 139.2 58.7 38.4 189.6 -2.6 17.3 4 4 P S + 0 0 103 1,-0.1 2,-0.4 2,-0.0 -1,-0.1 0.774 58.8 56.8 -81.9 -28.6 190.0 -6.0 15.6 5 5 P N - 0 0 144 7,-0.0 2,-0.4 0, 0.0 -1,-0.1 -0.870 69.9-159.0-108.6 138.8 191.7 -4.5 12.6 6 6 P N - 0 0 111 -2,-0.4 6,-0.1 1,-0.2 -2,-0.0 -0.964 9.6-168.0-120.4 130.2 194.8 -2.4 12.7 7 7 P D S S- 0 0 121 -2,-0.4 -1,-0.2 4,-0.2 5,-0.1 0.984 83.5 -32.1 -75.7 -66.3 195.9 0.0 9.9 8 8 P A S S- 0 0 88 3,-0.2 -2,-0.0 0, 0.0 -1,-0.0 0.137 85.7 -98.2-143.2 18.0 199.5 0.9 11.0 9 9 P A S S+ 0 0 71 2,-0.1 3,-0.1 1,-0.0 -3,-0.0 0.180 97.4 111.2 81.9 -17.7 199.3 0.7 14.8 10 10 P G S S- 0 0 61 1,-0.2 2,-0.3 2,-0.0 3,-0.0 0.967 84.9 -67.3 -50.3 -67.7 198.9 4.5 14.9 11 11 P N - 0 0 125 1,-0.1 3,-0.5 0, 0.0 -4,-0.2 -0.970 26.2-110.9-178.3 168.7 195.3 4.6 16.1 12 12 P G S S+ 0 0 55 -2,-0.3 4,-0.1 1,-0.2 -1,-0.1 0.577 86.5 102.1 -90.1 -11.8 191.7 3.9 15.3 13 13 P A + 0 0 81 2,-0.1 3,-0.2 -3,-0.0 -1,-0.2 0.713 52.6 133.5 -43.6 -24.3 190.8 7.6 15.1 14 14 P A S S- 0 0 48 -3,-0.5 2,-0.8 1,-0.2 -2,-0.0 0.153 75.1 -90.5 -30.5 142.6 190.9 7.1 11.3 15 15 P Q + 0 0 122 1,-0.1 2,-0.2 2,-0.0 -1,-0.2 -0.507 69.9 142.3 -67.4 105.5 187.9 8.6 9.5 16 16 P T - 0 0 86 -2,-0.8 2,-0.9 -3,-0.2 5,-0.3 -0.726 28.0-169.7-149.8 92.3 185.4 5.8 9.3 17 17 P F B > S-A 20 0A 47 3,-2.9 3,-1.5 -2,-0.2 38,-0.1 -0.750 78.8 -32.6 -89.5 105.9 181.7 6.8 9.7 18 18 P G T 3 S- 0 0 57 -2,-0.9 -1,-0.2 1,-0.3 33,-0.1 0.594 132.9 -36.5 63.3 9.4 179.6 3.6 10.1 19 19 P G T 3 S+ 0 0 52 1,-0.4 -1,-0.3 32,-0.1 2,-0.2 -0.031 127.6 60.3 135.6 -36.6 182.0 1.8 7.9 20 20 P Y B < S-A 17 0A 69 -3,-1.5 -3,-2.9 9,-0.0 -1,-0.4 -0.748 71.8-117.7-121.1 169.9 183.1 4.3 5.2 21 21 P S >> - 0 0 46 -5,-0.3 3,-3.0 -2,-0.2 4,-2.6 -0.742 33.3-104.2-107.1 155.1 184.9 7.7 5.1 22 22 P V H 3> S+ 0 0 45 1,-0.3 4,-2.1 -2,-0.3 5,-0.3 0.865 120.2 58.4 -39.3 -53.8 183.5 11.0 3.8 23 23 P A H 34 S+ 0 0 70 1,-0.2 -1,-0.3 2,-0.2 4,-0.1 0.698 115.6 37.4 -56.2 -18.2 185.5 10.8 0.6 24 24 P D H X>>S+ 0 0 59 -3,-3.0 4,-3.7 2,-0.1 5,-1.5 0.818 112.5 53.8 -99.4 -43.3 183.7 7.5 -0.1 25 25 P L H 3<5S+ 0 0 1 -4,-2.6 -2,-0.2 1,-0.2 -3,-0.2 0.727 113.5 46.9 -63.2 -22.1 180.2 8.4 1.2 26 26 P Q T 3<5S+ 0 0 78 -4,-2.1 -1,-0.2 -5,-0.3 -2,-0.1 0.591 130.2 17.4 -95.8 -14.9 180.3 11.4 -1.1 27 27 P Q T <45S+ 0 0 161 -3,-0.7 -2,-0.2 -5,-0.3 -3,-0.1 0.516 132.7 30.5-131.6 -15.1 181.5 9.7 -4.2 28 28 P R T <5S+ 0 0 167 -4,-3.7 2,-0.7 1,-0.2 3,-0.2 0.793 118.5 30.2-111.5 -62.7 181.0 6.0 -3.8 29 29 P Y S - 0 0 11 5,-0.2 3,-1.9 -2,-0.2 2,-0.3 -0.386 51.6 -40.8-110.5-169.5 161.3 0.2 -8.4 36 36 P F T 3 S- 0 0 93 1,-0.3 -1,-0.1 -2,-0.1 3,-0.1 -0.360 124.4 -26.9 -57.0 112.9 158.2 0.9 -10.5 37 37 P D T 3 S+ 0 0 52 -2,-0.3 2,-0.3 1,-0.2 -1,-0.3 0.841 100.0 164.6 45.8 38.6 156.2 3.4 -8.5 38 38 P K < - 0 0 97 -3,-1.9 -1,-0.2 1,-0.1 48,-0.1 -0.693 30.1-171.1 -89.9 138.3 157.9 1.9 -5.4 39 39 P Y + 0 0 107 -2,-0.3 2,-0.3 -3,-0.1 -1,-0.1 -0.359 58.2 80.1-122.1 50.0 157.8 3.8 -2.1 40 40 P D - 0 0 89 -5,-0.1 -5,-0.2 49,-0.0 2,-0.2 -0.992 66.8-128.7-153.4 150.4 160.3 1.8 -0.0 41 41 P I - 0 0 41 -2,-0.3 2,-0.4 -7,-0.1 -7,-0.1 -0.573 24.4-122.6 -98.0 163.2 164.0 1.4 0.4 42 42 P T >> - 0 0 54 -2,-0.2 3,-2.2 -9,-0.1 4,-0.8 -0.859 16.7-122.6-110.7 143.4 166.0 -1.8 0.3 43 43 P G H >> S+ 0 0 63 -2,-0.4 4,-0.8 1,-0.3 3,-0.6 0.787 110.8 66.0 -47.9 -32.2 168.3 -3.3 2.9 44 44 P E H 34 S+ 0 0 165 1,-0.2 -1,-0.3 2,-0.2 4,-0.2 0.833 110.2 35.0 -61.3 -34.0 171.1 -3.2 0.4 45 45 P Y H <> S+ 0 0 61 -3,-2.2 4,-0.9 1,-0.1 3,-0.4 0.402 96.8 87.2-100.4 -0.2 171.0 0.6 0.3 46 46 P V H XX S+ 0 0 42 -4,-0.8 4,-1.7 -3,-0.6 3,-0.6 0.906 73.8 70.1 -65.2 -43.0 170.2 1.0 4.0 47 47 P Q H 3X S+ 0 0 45 -4,-0.8 4,-2.4 1,-0.3 -1,-0.2 0.855 96.2 54.8 -42.2 -43.4 173.8 1.0 5.1 48 48 P I H 3> S+ 0 0 2 -3,-0.4 4,-4.1 1,-0.2 5,-0.5 0.942 103.1 55.0 -57.7 -49.7 174.2 4.4 3.5 49 49 P L H < S- 0 0 50 -4,-0.9 3,-1.4 -3,-0.4 -1,-0.1 -0.927 70.3-160.9-112.5 113.6 178.5 17.7 12.0 60 60 P P T 3 S+ 0 0 113 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.903 95.7 38.8 -56.5 -46.8 176.0 20.3 13.4 61 61 P A T 3 S+ 0 0 95 2,-0.0 2,-0.6 42,-0.0 -4,-0.1 0.198 91.0 116.8 -91.5 16.8 175.9 22.5 10.3 62 62 P A < - 0 0 12 -3,-1.4 2,-0.4 -6,-0.4 -3,-0.1 -0.772 42.0-178.2 -90.7 118.7 175.9 19.4 8.0 63 63 P K - 0 0 106 -2,-0.6 2,-0.4 71,-0.1 41,-0.2 -0.956 17.4-141.3-120.2 134.4 172.8 19.0 5.9 64 64 P V E -c 104 0B 2 39,-1.8 41,-1.5 -2,-0.4 2,-0.7 -0.785 6.9-153.7 -97.4 134.4 171.9 16.2 3.5 65 65 P L E -cD 105 133B 67 68,-3.0 68,-3.0 -2,-0.4 2,-0.5 -0.881 8.9-153.9-109.6 103.3 170.2 17.0 0.2 66 66 P V E -cD 106 132B 0 39,-3.8 41,-1.3 -2,-0.7 2,-0.6 -0.650 7.8-158.9 -79.8 120.1 168.2 14.0 -1.1 67 67 P E E -cD 107 131B 59 64,-1.6 64,-1.4 -2,-0.5 2,-0.4 -0.886 6.5-162.9-103.7 117.6 167.8 14.1 -4.8 68 68 P G E +cD 108 130B 4 39,-2.0 41,-1.8 -2,-0.6 42,-0.3 -0.810 16.4 164.5-103.3 140.9 165.0 12.0 -6.3 69 69 P N E + D 0 129B 30 60,-1.2 60,-2.1 -2,-0.4 2,-0.1 -0.761 5.9 170.3-157.2 104.8 164.6 11.0 -9.9 70 70 P T - 0 0 6 -2,-0.2 45,-0.2 58,-0.2 58,-0.1 -0.311 50.6 -51.3-101.9-172.0 162.3 8.3 -11.2 71 71 P D - 0 0 0 1,-0.1 -1,-0.2 -2,-0.1 40,-0.1 -0.310 46.3-128.2 -62.6 143.8 161.3 7.3 -14.7 72 72 P E S S+ 0 0 59 38,-0.1 39,-0.2 39,-0.1 7,-0.1 0.790 71.2 121.8 -63.4 -29.4 160.0 10.1 -16.9 73 73 P R S S+ 0 0 120 1,-0.1 2,-0.6 37,-0.1 38,-0.1 -0.089 75.2 9.7 -41.6 119.6 156.9 8.2 -17.7 74 74 P G S S- 0 0 29 66,-0.1 -1,-0.1 4,-0.1 -2,-0.1 -0.930 109.2 -53.8 115.1-113.5 153.9 10.3 -16.6 75 75 P T >> - 0 0 76 -2,-0.6 4,-3.6 1,-0.1 3,-0.8 -0.952 40.8-104.5-167.2 147.6 154.5 13.9 -15.6 76 76 P P H 3>>S+ 0 0 53 0, 0.0 4,-1.7 0, 0.0 5,-0.6 0.858 121.9 52.5 -41.7 -45.9 156.6 16.0 -13.1 77 77 P E H 3>5S+ 0 0 161 1,-0.2 4,-1.2 3,-0.2 5,-0.2 0.919 115.2 40.6 -60.1 -42.5 153.6 16.4 -10.9 78 78 P Y H <>5S+ 0 0 59 -3,-0.8 4,-2.3 2,-0.2 -1,-0.2 0.937 125.8 36.3 -71.3 -46.4 153.0 12.7 -10.8 79 79 P N H X5S+ 0 0 1 -4,-3.6 4,-2.9 2,-0.2 5,-0.3 0.995 114.7 51.3 -67.7 -75.4 156.7 11.9 -10.5 80 80 P I H X5S+ 0 0 57 -4,-1.7 4,-3.7 1,-0.2 5,-0.2 0.785 114.9 48.4 -29.7 -43.5 157.9 14.8 -8.3 81 81 P A H XX S+ 0 0 8 -4,-1.8 4,-1.7 1,-0.3 3,-0.5 0.912 111.3 53.5 -52.8 -39.8 160.0 8.6 -1.2 87 87 P A H 3X S+ 0 0 4 -4,-3.5 4,-2.9 1,-0.3 -1,-0.3 0.868 102.9 56.5 -61.4 -35.6 162.4 11.4 -0.3 88 88 P D H 3X S+ 0 0 58 -4,-1.4 4,-2.2 -3,-0.5 -1,-0.3 0.803 101.9 58.8 -65.1 -29.1 160.2 12.1 2.7 89 89 P A H X S+ 0 0 92 -4,-1.2 4,-1.3 2,-0.2 3,-0.6 0.989 107.7 38.7 -61.2 -61.2 164.6 8.3 8.5 94 94 P L H 3<>S+ 0 0 2 -4,-2.1 5,-2.4 1,-0.3 4,-0.4 0.832 113.4 60.6 -58.3 -30.8 167.6 10.4 9.4 95 95 P A H ><5S+ 0 0 39 -4,-1.4 3,-1.2 -5,-0.3 -1,-0.3 0.890 102.2 50.1 -63.8 -40.2 165.1 12.5 11.3 96 96 P G H <<5S+ 0 0 73 -4,-2.2 -1,-0.2 -3,-0.6 -2,-0.2 0.771 103.0 61.5 -69.5 -25.1 164.2 9.6 13.5 97 97 P K T 3<5S- 0 0 90 -4,-1.3 -1,-0.3 -5,-0.1 -2,-0.2 0.571 131.8 -91.2 -76.8 -9.4 167.9 9.0 14.1 98 98 P G T < 5S+ 0 0 55 -3,-1.2 2,-0.4 -4,-0.4 -3,-0.2 0.375 79.7 143.4 114.7 -2.0 168.1 12.5 15.7 99 99 P V < - 0 0 6 -5,-2.4 -1,-0.3 -6,-0.2 -2,-0.1 -0.575 52.6-117.0 -75.6 127.3 169.0 14.5 12.6 100 100 P D > - 0 0 107 -2,-0.4 3,-1.1 1,-0.1 4,-0.3 -0.276 11.9-129.0 -62.9 146.6 167.3 18.0 12.6 101 101 P A G > S+ 0 0 64 1,-0.3 3,-2.1 2,-0.2 -1,-0.1 0.858 107.0 66.4 -64.1 -36.2 164.9 18.7 9.8 102 102 P G G 3 S+ 0 0 52 1,-0.3 -1,-0.3 -39,-0.0 -2,-0.1 0.735 101.5 49.5 -58.5 -21.9 166.8 21.9 9.0 103 103 P K G < S+ 0 0 31 -3,-1.1 -39,-1.8 -40,-0.1 2,-0.3 0.483 99.2 86.7 -94.2 -5.8 169.7 19.8 8.0 104 104 P L E < +c 64 0B 18 -3,-2.1 2,-0.3 -4,-0.3 -39,-0.2 -0.701 54.2 180.0 -96.7 149.1 167.5 17.6 5.7 105 105 P G E -c 65 0B 20 -41,-1.5 -39,-3.8 -2,-0.3 2,-0.3 -0.995 4.9-174.0-149.6 141.0 166.7 18.4 2.1 106 106 P T E +c 66 0B 40 -2,-0.3 2,-0.3 -41,-0.2 -39,-0.2 -0.962 10.8 155.6-136.2 153.4 164.6 16.8 -0.6 107 107 P V E -c 67 0B 47 -41,-1.3 -39,-2.0 -2,-0.3 2,-0.3 -0.966 18.7-154.2-163.5 171.7 163.9 17.4 -4.2 108 108 P S E -c 68 0B 8 -2,-0.3 -39,-0.2 -41,-0.2 -28,-0.1 -0.909 14.6-176.8-162.0 131.1 162.8 15.6 -7.5 109 109 P Y > + 0 0 79 -41,-1.8 4,-1.7 -2,-0.3 -40,-0.1 0.068 28.4 158.8-115.8 23.1 163.4 16.2 -11.2 110 110 P G T 4 S- 0 0 1 1,-0.3 3,-0.2 -42,-0.3 -1,-0.1 0.610 81.8 -2.0 -8.5-106.4 161.2 13.4 -12.5 111 111 P E T 4 S+ 0 0 59 1,-0.2 -1,-0.3 -39,-0.2 -39,-0.1 0.683 122.1 84.7 -71.2 -18.5 160.3 14.3 -16.0 112 112 P E T 4 S- 0 0 112 1,-0.3 -2,-0.2 -4,-0.1 -1,-0.2 0.960 112.6 -2.6 -47.6 -70.2 162.2 17.6 -15.6 113 113 P K S < S- 0 0 136 -4,-1.7 -1,-0.3 -3,-0.2 -4,-0.1 -0.781 80.3-155.2-130.7 89.6 165.7 16.2 -16.4 114 114 P P - 0 0 60 0, 0.0 3,-0.1 0, 0.0 -43,-0.1 -0.149 3.1-156.4 -60.0 156.3 165.7 12.4 -17.1 115 115 P A S S+ 0 0 44 1,-0.3 2,-0.7 -45,-0.2 12,-0.1 0.864 75.3 36.7 -97.7 -74.7 168.9 10.4 -16.6 116 116 P V S S- 0 0 31 7,-0.3 -1,-0.3 8,-0.1 11,-0.1 -0.755 83.8-133.3 -88.8 114.2 168.9 7.3 -18.7 117 117 P L + 0 0 149 -2,-0.7 2,-0.2 -3,-0.1 6,-0.0 -0.394 66.3 44.3 -66.6 138.3 167.2 7.9 -22.1 118 118 P G S S- 0 0 35 -2,-0.1 -2,-0.1 1,-0.1 2,-0.0 -0.579 78.4-102.6 119.0 176.7 164.7 5.3 -23.2 119 119 P H + 0 0 135 -2,-0.2 2,-0.3 -48,-0.1 -1,-0.1 -0.439 68.6 111.5-141.6 65.5 161.8 3.3 -21.6 120 120 P D S >>S- 0 0 99 1,-0.0 4,-4.0 -2,-0.0 5,-0.5 -0.973 80.3-100.7-137.8 150.3 162.9 -0.2 -20.8 121 121 P E H >5S+ 0 0 121 -2,-0.3 4,-1.5 1,-0.2 5,-0.1 0.757 124.2 52.4 -38.4 -30.9 163.4 -2.1 -17.5 122 122 P A H >5S+ 0 0 68 2,-0.2 4,-1.6 3,-0.2 -1,-0.2 0.982 120.0 28.5 -72.1 -59.7 167.1 -1.5 -18.1 123 123 P A H >5S+ 0 0 7 2,-0.2 4,-1.2 1,-0.2 -7,-0.3 0.907 123.7 52.0 -67.7 -42.4 167.0 2.3 -18.7 124 124 P Y H X5S+ 0 0 15 -4,-4.0 4,-1.9 1,-0.2 3,-0.4 0.913 108.9 49.6 -60.7 -45.1 164.0 2.6 -16.5 125 125 P S H <